Wall clock time and date at job start Tue Mar 31 2020 17:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.36935 * 119.99926 * 274.99989 * 4 2 1 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 2 8 8 N 1.31617 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47154 * 89.99247 * 9 7 5 11 11 H 1.48496 * 109.47375 * 209.99772 * 9 7 5 12 12 H 1.48502 * 109.46736 * 329.99467 * 9 7 5 13 13 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 14 14 H 1.08995 * 109.47843 * 300.00405 * 13 2 1 15 15 C 1.52998 * 109.47053 * 179.97438 * 13 2 1 16 16 N 1.46504 * 109.47143 * 60.00410 * 13 2 1 17 17 C 1.34774 * 120.00240 * 204.99720 * 16 13 2 18 18 O 1.21552 * 119.99766 * 0.02562 * 17 16 13 19 19 C 1.47842 * 120.00087 * 179.97438 * 17 16 13 20 20 C 1.39581 * 120.14360 * 359.72298 * 19 17 16 21 21 C 1.37955 * 119.84958 * 179.74704 * 20 19 17 22 22 C 1.38360 * 120.14894 * 0.53291 * 21 20 19 23 23 C 1.50698 * 119.85885 * 179.76712 * 22 21 20 24 24 C 1.52998 * 109.47206 * 269.97759 * 23 22 21 25 25 N 1.46893 * 109.47612 * 179.97438 * 24 23 22 26 26 C 1.46899 * 111.00033 * 66.04328 * 25 24 23 27 27 C 1.46897 * 111.00487 * 190.00308 * 25 24 23 28 28 C 1.38364 * 120.29021 * 359.73958 * 22 21 20 29 29 C 1.37953 * 120.14431 * 359.97438 * 28 22 21 30 30 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 32 32 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 33 33 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 34 34 H 0.97004 * 120.00382 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47317 * 60.00192 * 15 13 2 36 36 H 1.09006 * 109.47233 * 180.02562 * 15 13 2 37 37 H 1.09002 * 109.47294 * 299.99979 * 15 13 2 38 38 H 0.97005 * 119.99919 * 24.99503 * 16 13 2 39 39 H 1.07995 * 120.07371 * 0.02562 * 20 19 17 40 40 H 1.08002 * 119.92827 * 180.27851 * 21 20 19 41 41 H 1.09005 * 109.46963 * 29.97521 * 23 22 21 42 42 H 1.09003 * 109.47315 * 149.97666 * 23 22 21 43 43 H 1.08999 * 109.46979 * 300.00227 * 24 23 22 44 44 H 1.09001 * 109.46921 * 59.99215 * 24 23 22 45 45 H 1.08996 * 109.47168 * 60.00209 * 26 25 24 46 46 H 1.09001 * 109.46838 * 180.02562 * 26 25 24 47 47 H 1.08999 * 109.47093 * 299.99959 * 26 25 24 48 48 H 1.08994 * 109.47392 * 59.99218 * 27 25 24 49 49 H 1.09002 * 109.47558 * 180.02562 * 27 25 24 50 50 H 1.09003 * 109.46950 * 299.99911 * 27 25 24 51 51 H 1.07998 * 119.92635 * 179.97438 * 28 22 21 52 52 H 1.08004 * 120.07456 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3757 6 1 1.8925 1.0405 2.4241 7 6 2.6063 -0.6632 3.5106 8 7 2.9138 -1.9417 3.4529 9 14 2.7840 0.2684 5.1199 10 1 1.5139 0.1823 5.8845 11 1 3.8842 -0.3287 5.9187 12 1 3.0951 1.6924 4.8356 13 6 2.0400 -0.7213 -1.2492 14 1 1.6766 -1.7489 -1.2493 15 6 3.5699 -0.7208 -1.2495 16 7 1.5517 -0.0307 -2.4454 17 6 1.4230 -0.7030 -3.6064 18 8 1.7116 -1.8825 -3.6608 19 6 0.9297 -0.0062 -4.8134 20 6 0.5909 1.3465 -4.7526 21 6 0.1362 1.9920 -5.8838 22 6 0.0052 1.2989 -7.0741 23 6 -0.4971 2.0092 -8.3046 24 6 -2.0218 1.9008 -8.3694 25 7 -2.5116 2.5937 -9.5684 26 6 -2.0607 1.9141 -10.7902 27 6 -3.9752 2.7172 -9.5443 28 6 0.3340 -0.0436 -7.1398 29 6 0.7954 -0.6995 -6.0174 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6319 1.1526 34 1 3.2330 -2.4001 4.2460 35 1 3.9337 -1.2343 -0.3595 36 1 3.9333 -1.2343 -2.1397 37 1 3.9329 0.3070 -1.2498 38 1 1.3210 0.9105 -2.4019 39 1 0.6888 1.8876 -3.8231 40 1 -0.1220 3.0397 -5.8393 41 1 -0.2091 3.0596 -8.2607 42 1 -0.0621 1.5499 -9.1923 43 1 -2.3098 0.8504 -8.4131 44 1 -2.4567 2.3600 -7.4816 45 1 -2.4391 0.8920 -10.7982 46 1 -2.4369 2.4481 -11.6628 47 1 -0.9711 1.8984 -10.8162 48 1 -4.2774 3.2851 -8.6644 49 1 -4.3112 3.2334 -10.4436 50 1 -4.4230 1.7241 -9.5071 51 1 0.2290 -0.5790 -8.0718 52 1 1.0513 -1.7475 -6.0698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725111710.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:36 Heat of formation + Delta-G solvation = -23.834882 kcal Electronic energy + Delta-G solvation = -27912.834249 eV Core-core repulsion = 24104.324625 eV Total energy + Delta-G solvation = -3808.509624 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.38230 -39.93000 -38.45813 -38.07255 -35.65617 -34.31381 -33.46110 -31.97961 -31.16071 -30.15609 -29.67238 -28.44743 -26.12659 -25.91138 -24.51350 -23.62300 -23.13050 -21.89502 -21.56800 -21.12383 -19.45121 -18.85262 -17.41740 -16.88282 -16.67277 -16.43880 -16.22739 -15.94939 -15.83674 -15.69879 -15.47466 -15.25586 -15.03600 -14.76348 -14.52473 -14.29626 -14.09169 -14.00780 -13.79375 -13.45760 -13.24292 -13.17217 -12.92161 -12.83608 -12.74943 -12.68186 -12.59622 -12.44292 -12.28648 -12.16022 -12.13848 -12.10683 -11.73026 -11.62801 -11.47965 -11.02464 -10.96583 -10.19903 -9.94332 -9.69192 -9.31258 -9.01205 -7.91185 -5.20384 -0.16226 0.42932 1.49637 1.50928 1.59128 1.83931 2.08130 2.60154 2.83752 3.05429 3.42922 3.64075 3.77611 3.85590 3.96673 4.01444 4.04186 4.13867 4.19537 4.24060 4.33394 4.34315 4.42691 4.51254 4.51973 4.58052 4.64455 4.72802 4.75989 4.76687 4.83952 4.87167 4.94300 4.97629 5.03132 5.03742 5.05248 5.11696 5.16051 5.21741 5.29668 5.33592 5.40986 5.48750 5.51410 5.58584 5.61570 5.93786 6.07331 6.09851 6.29186 6.54572 7.20606 7.35737 8.08797 8.32426 9.32264 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.001824 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.168934 B =15349.096373 C =16003.073893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 H 0.064 0.936 4 N -0.730 5.730 5 C -0.233 4.233 6 H 0.082 0.918 7 C -0.077 4.077 8 N -0.970 5.970 9 Si 0.972 3.028 10 H -0.290 1.290 11 H -0.300 1.300 12 H -0.266 1.266 13 C 0.150 3.850 14 H 0.058 0.942 15 C -0.143 4.143 16 N -0.698 5.698 17 C 0.553 3.447 18 O -0.586 6.586 19 C -0.153 4.153 20 C -0.080 4.080 21 C -0.120 4.120 22 C -0.054 4.054 23 C -0.073 4.073 24 C 0.062 3.938 25 N -0.559 5.559 26 C 0.017 3.983 27 C 0.022 3.978 28 C -0.125 4.125 29 C -0.074 4.074 30 H 0.030 0.970 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.371 0.629 34 H 0.249 0.751 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.413 0.587 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.030 0.970 44 H 0.077 0.923 45 H 0.024 0.976 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.023 0.977 51 H 0.144 0.856 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.766 13.008 -30.237 34.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 H 0.082 0.918 4 N -0.370 5.370 5 C -0.365 4.365 6 H 0.100 0.900 7 C -0.269 4.269 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.218 1.218 11 H -0.227 1.227 12 H -0.191 1.191 13 C 0.044 3.956 14 H 0.076 0.924 15 C -0.201 4.201 16 N -0.350 5.350 17 C 0.342 3.658 18 O -0.467 6.467 19 C -0.156 4.156 20 C -0.098 4.098 21 C -0.137 4.137 22 C -0.054 4.054 23 C -0.110 4.110 24 C -0.066 4.066 25 N -0.283 5.283 26 C -0.131 4.131 27 C -0.126 4.126 28 C -0.143 4.143 29 C -0.093 4.093 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.203 0.797 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.251 0.749 39 H 0.165 0.835 40 H 0.173 0.827 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.049 0.951 44 H 0.095 0.905 45 H 0.043 0.957 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.090 0.910 49 H 0.095 0.905 50 H 0.042 0.958 51 H 0.162 0.838 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.366 12.826 -30.129 34.348 hybrid contribution -0.093 -1.164 1.390 1.815 sum -10.459 11.662 -28.740 32.732 Atomic orbital electron populations 1.22307 0.97515 1.00517 1.01134 1.20558 0.92949 0.95668 0.84879 0.91805 1.42469 1.78448 1.10227 1.05893 1.19607 1.34793 0.94281 0.87786 0.90033 1.25541 1.03137 0.96794 1.01416 1.69833 1.52880 1.10180 1.29231 0.85162 0.76630 0.78178 0.79910 1.21763 1.22702 1.19103 1.20937 0.94187 0.96357 0.84119 0.92352 1.21931 0.95041 1.02251 1.00926 1.45752 1.66245 1.14499 1.08527 1.18782 0.76925 0.86117 0.83935 1.90744 1.52568 1.17707 1.85700 1.19876 1.06651 0.95694 0.93387 1.21549 0.95883 0.92203 1.00202 1.21314 0.99624 1.01420 0.91391 1.20266 0.95775 0.93550 0.95854 1.20614 0.94544 1.01433 0.94410 1.22085 0.94829 0.96473 0.93246 1.62011 1.11723 1.51761 1.02760 1.22511 1.01895 0.96477 0.92201 1.22422 0.86495 1.00222 1.03450 1.21190 1.00002 0.94646 0.98439 1.21301 0.96073 1.00137 0.91838 0.95045 0.93577 0.90883 0.79684 0.94227 0.92797 0.93527 0.91546 0.74892 0.83517 0.82680 0.89070 0.89922 0.95130 0.90467 0.95732 0.90770 0.90434 0.90993 0.90544 0.95817 0.83836 0.86151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 9.33 71.98 0.67 -4.60 16 2 C 0.17 6.29 2.52 44.99 0.11 6.40 16 3 H 0.06 2.25 8.08 -2.39 -0.02 2.23 16 4 N -0.73 -35.78 4.43 -322.96 -1.43 -37.21 16 5 C -0.23 -12.48 9.93 84.03 0.83 -11.65 16 6 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 7 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 8 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 9 Si 0.97 45.63 29.55 68.60 2.03 47.66 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 13 C 0.15 5.21 2.21 44.99 0.10 5.31 16 14 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 15 C -0.14 -5.10 9.32 71.98 0.67 -4.43 16 16 N -0.70 -19.03 4.33 -445.42 -1.93 -20.96 16 17 C 0.55 16.76 7.74 86.79 0.67 17.44 16 18 O -0.59 -22.97 16.01 -3.88 -0.06 -23.04 16 19 C -0.15 -3.54 5.87 -20.09 -0.12 -3.66 16 20 C -0.08 -1.30 9.54 22.53 0.21 -1.08 16 21 C -0.12 -1.53 9.68 22.23 0.22 -1.31 16 22 C -0.05 -0.69 5.14 -19.81 -0.10 -0.80 16 23 C -0.07 -0.67 5.26 29.85 0.16 -0.52 16 24 C 0.06 0.64 4.94 86.30 0.43 1.07 16 25 N -0.56 -5.93 5.02 -948.89 -4.76 -10.69 16 26 C 0.02 0.14 9.32 127.69 1.19 1.33 16 27 C 0.02 0.20 9.57 127.69 1.22 1.42 16 28 C -0.12 -1.96 9.68 22.23 0.22 -1.75 16 29 C -0.07 -1.63 9.60 22.53 0.22 -1.41 16 30 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.92 7.45 -2.39 -0.02 1.90 16 33 H 0.37 20.18 7.59 -92.70 -0.70 19.47 16 34 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 35 H 0.05 2.22 7.45 -2.39 -0.02 2.20 16 36 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.41 8.35 6.42 -92.70 -0.60 7.76 16 39 H 0.15 1.72 6.41 -2.91 -0.02 1.70 16 40 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 41 H 0.09 0.78 8.08 -2.38 -0.02 0.76 16 42 H 0.08 0.67 6.49 -2.39 -0.02 0.66 16 43 H 0.03 0.36 8.12 -2.39 -0.02 0.34 16 44 H 0.08 0.81 8.06 -2.39 -0.02 0.80 16 45 H 0.02 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.07 0.52 8.12 -2.39 -0.02 0.50 16 47 H 0.08 0.55 6.47 -2.39 -0.02 0.54 16 48 H 0.07 0.60 8.12 -2.39 -0.02 0.58 16 49 H 0.08 0.56 8.12 -2.39 -0.02 0.54 16 50 H 0.02 0.22 8.14 -2.39 -0.02 0.20 16 51 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 52 H 0.12 2.92 7.65 -2.91 -0.02 2.90 16 Total: -1.00 -70.70 420.19 0.90 -69.80 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -0.40 Total: 35.71 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 7.17 Total: -2.11 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -7.84 Total: -128.02 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.06 Total: -23.04 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -70.70 0.90 -69.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725111710.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.968 kcal (2) G-P(sol) polarization free energy of solvation -70.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds