Wall clock time and date at job start Tue Mar 31 2020 17:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46719 * 2 1 4 4 N 1.46494 * 109.46929 * 120.00283 * 2 1 3 5 5 C 1.36943 * 119.99938 * 274.99697 * 4 2 1 6 6 H 1.07997 * 120.00019 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99881 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99801 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99706 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47331 * 60.00338 * 9 7 5 11 11 H 1.48504 * 109.47237 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47565 * 300.00115 * 9 7 5 13 13 C 1.52998 * 109.46989 * 240.00406 * 2 1 3 14 14 H 1.08998 * 109.46926 * 174.99854 * 13 2 1 15 15 C 1.53008 * 109.46987 * 294.99658 * 13 2 1 16 16 N 1.46501 * 109.47277 * 54.99776 * 13 2 1 17 17 C 1.34776 * 119.99681 * 155.00042 * 16 13 2 18 18 O 1.21548 * 120.00618 * 0.02562 * 17 16 13 19 19 C 1.47849 * 119.99888 * 179.97438 * 17 16 13 20 20 C 1.39575 * 120.14553 * 180.02562 * 19 17 16 21 21 C 1.37956 * 119.85210 * 180.02562 * 20 19 17 22 22 C 1.38365 * 120.14727 * 0.02562 * 21 20 19 23 23 C 1.50694 * 119.85539 * 179.70485 * 22 21 20 24 24 C 1.53002 * 109.47433 * 89.99794 * 23 22 21 25 25 N 1.46893 * 109.47657 * 180.02562 * 24 23 22 26 26 C 1.46899 * 111.00558 * 170.00182 * 25 24 23 27 27 C 1.46910 * 111.00052 * 293.95682 * 25 24 23 28 28 C 1.38364 * 120.29020 * 359.97438 * 22 21 20 29 29 C 1.37956 * 120.14261 * 359.97438 * 28 22 21 30 30 H 1.09000 * 109.47614 * 59.99786 * 1 2 3 31 31 H 1.09007 * 109.47332 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47515 * 299.99687 * 1 2 3 33 33 H 0.97002 * 120.00069 * 95.00142 * 4 2 1 34 34 H 0.97005 * 119.99247 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.46991 * 179.97438 * 15 13 2 36 36 H 1.08990 * 109.46921 * 300.00278 * 15 13 2 37 37 H 1.09006 * 109.46839 * 60.00285 * 15 13 2 38 38 H 0.96994 * 119.99934 * 335.00049 * 16 13 2 39 39 H 1.08000 * 120.07314 * 359.97438 * 20 19 17 40 40 H 1.08004 * 119.92795 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.47360 * 210.00081 * 23 22 21 42 42 H 1.09002 * 109.47099 * 330.00301 * 23 22 21 43 43 H 1.09003 * 109.47082 * 300.00458 * 24 23 22 44 44 H 1.09007 * 109.47004 * 60.00022 * 24 23 22 45 45 H 1.09003 * 109.47010 * 59.99749 * 26 25 24 46 46 H 1.08997 * 109.47124 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.46892 * 300.00270 * 26 25 24 48 48 H 1.08997 * 109.46885 * 59.99213 * 27 25 24 49 49 H 1.08996 * 109.47459 * 179.97438 * 27 25 24 50 50 H 1.08999 * 109.46353 * 299.99743 * 27 25 24 51 51 H 1.07993 * 119.92264 * 180.02562 * 28 22 21 52 52 H 1.08000 * 120.06750 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0403 2.4244 7 6 2.6123 -0.6618 3.5090 8 7 2.9262 -1.9387 3.4495 9 14 2.7914 0.2702 5.1179 10 1 1.4692 0.8070 5.5288 11 1 3.3013 -0.6480 6.1677 12 1 3.7465 1.3926 4.9361 13 6 2.0400 -0.7212 -1.2493 14 1 3.1263 -0.6442 -1.2952 15 6 1.6352 -2.1955 -1.1880 16 7 1.4558 -0.1035 -2.4424 17 6 2.0912 -0.1936 -3.6275 18 8 3.1487 -0.7877 -3.7067 19 6 1.5014 0.4292 -4.8318 20 6 2.1566 0.3373 -6.0608 21 6 1.6010 0.9211 -7.1804 22 6 0.3974 1.5971 -7.0869 23 6 -0.2002 2.2381 -8.3128 24 6 -1.1113 1.2335 -9.0210 25 7 -1.6934 1.8581 -10.2164 26 6 -2.3812 0.8622 -11.0489 27 6 -2.6003 2.9540 -9.8491 28 6 -0.2572 1.6919 -5.8716 29 6 0.2870 1.1116 -4.7445 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6318 1.1525 34 1 3.2502 -2.3958 4.2414 35 1 1.9982 -2.7091 -2.0783 36 1 2.0699 -2.6549 -0.3004 37 1 0.5489 -2.2724 -1.1421 38 1 0.6118 0.3702 -2.3794 39 1 3.0967 -0.1890 -6.1348 40 1 2.1067 0.8504 -8.1321 41 1 -0.7819 3.1119 -8.0191 42 1 0.5983 2.5437 -8.9889 43 1 -0.5296 0.3597 -9.3148 44 1 -1.9099 0.9278 -8.3450 45 1 -3.1812 0.3972 -10.4728 46 1 -2.8031 1.3516 -11.9267 47 1 -1.6699 0.0990 -11.3646 48 1 -2.0483 3.7113 -9.2926 49 1 -3.0169 3.3991 -10.7526 50 1 -3.4082 2.5646 -9.2296 51 1 -1.1966 2.2206 -5.8055 52 1 -0.2252 1.1860 -3.7966 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725111713.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:49 Heat of formation + Delta-G solvation = 0.753675 kcal Electronic energy + Delta-G solvation = -27931.957959 eV Core-core repulsion = 24124.514575 eV Total energy + Delta-G solvation = -3807.443385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.36633 -39.04956 -37.82415 -36.82401 -34.01912 -33.48603 -31.88698 -31.10986 -29.82610 -28.76666 -28.21761 -28.05668 -25.47873 -24.41310 -23.49281 -22.87947 -22.35343 -21.29970 -20.24048 -19.29099 -18.04944 -17.30762 -16.42900 -16.23404 -15.75225 -15.43613 -15.10421 -15.00557 -14.93524 -14.63981 -14.49763 -14.15627 -13.86099 -13.63286 -13.49615 -13.33904 -13.14174 -12.80312 -12.76716 -12.45836 -12.33905 -12.22562 -12.00933 -11.87838 -11.64739 -11.54988 -11.50114 -11.30643 -11.08461 -10.93911 -10.82687 -10.47236 -10.28561 -10.00308 -9.83887 -9.62310 -9.23399 -9.04971 -8.94385 -8.86679 -8.74005 -7.01315 -5.78852 -3.08486 0.65726 1.13756 2.83488 3.29756 3.43264 3.44719 3.47992 3.48762 3.74905 4.39266 4.47879 4.57966 4.61760 4.65807 4.70176 4.72992 4.88893 4.90865 5.06117 5.09171 5.13158 5.16611 5.23231 5.34679 5.40476 5.42085 5.46778 5.51506 5.55869 5.62145 5.64191 5.71097 5.76305 5.82741 6.04462 6.06797 6.14547 6.17379 6.27395 6.28879 6.38947 6.47552 6.50079 6.51115 6.61766 6.65426 6.70836 6.92042 7.06198 7.67330 7.68720 8.36073 8.40080 9.50808 10.06063 10.41043 11.43610 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.026114 B = 0.001804 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.957344 B =15513.286339 C =15945.243956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.168 3.832 3 H 0.052 0.948 4 N -0.719 5.719 5 C -0.242 4.242 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.135 3.865 14 H 0.089 0.911 15 C -0.159 4.159 16 N -0.714 5.714 17 C 0.553 3.447 18 O -0.539 6.539 19 C -0.131 4.131 20 C -0.058 4.058 21 C -0.123 4.123 22 C -0.063 4.063 23 C -0.079 4.079 24 C 0.059 3.941 25 N -0.549 5.549 26 C 0.024 3.976 27 C 0.019 3.981 28 C -0.124 4.124 29 C -0.084 4.084 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.387 0.613 34 H 0.256 0.744 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.396 0.604 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.037 0.963 45 H 0.026 0.974 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.026 0.974 51 H 0.125 0.875 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.642 7.864 -28.338 31.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.057 3.943 3 H 0.070 0.930 4 N -0.362 5.362 5 C -0.373 4.373 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.031 3.969 14 H 0.107 0.893 15 C -0.217 4.217 16 N -0.366 5.366 17 C 0.339 3.661 18 O -0.417 6.417 19 C -0.134 4.134 20 C -0.077 4.077 21 C -0.141 4.141 22 C -0.064 4.064 23 C -0.117 4.117 24 C -0.069 4.069 25 N -0.273 5.273 26 C -0.125 4.125 27 C -0.129 4.129 28 C -0.142 4.142 29 C -0.103 4.103 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.222 0.778 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.233 0.767 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.086 0.914 50 H 0.045 0.955 51 H 0.143 0.857 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.477 7.730 -28.479 31.314 hybrid contribution -1.030 0.051 1.525 1.841 sum -11.507 7.780 -26.954 30.322 Atomic orbital electron populations 1.22543 0.99392 1.01281 0.99649 1.20359 0.92138 0.95624 0.86186 0.93029 1.42437 1.78220 1.10782 1.04781 1.19181 1.37043 0.93938 0.87162 0.91176 1.24744 1.01908 0.95996 0.98102 1.69652 1.50518 1.08670 1.29090 0.86254 0.77748 0.78612 0.83455 1.21297 1.21680 1.21253 1.21364 0.99119 0.92901 0.83516 0.89274 1.22142 1.01485 0.95772 1.02328 1.46189 1.25675 1.56425 1.08344 1.18286 0.84518 0.80013 0.83237 1.90769 1.22309 1.43022 1.85571 1.20080 0.96628 1.02144 0.94526 1.21299 0.99345 0.96174 0.90917 1.21040 0.95738 0.98683 0.98676 1.20007 0.94678 0.96906 0.94809 1.20640 0.99477 0.97724 0.93857 1.22136 0.97334 0.96985 0.90414 1.61988 1.34641 1.11412 1.19229 1.22386 0.97639 0.95231 0.97211 1.22468 0.94999 0.94602 1.00868 1.20954 1.00251 1.00966 0.92060 1.21329 0.94409 0.95714 0.98835 0.95066 0.92749 0.92312 0.77752 0.93384 0.93067 0.90426 0.92560 0.76678 0.84565 0.85353 0.90697 0.89810 0.90412 0.94438 0.95583 0.91276 0.91218 0.90959 0.91378 0.95531 0.85661 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.01 37.16 0.33 -2.47 16 2 C 0.17 3.24 2.93 -67.93 -0.20 3.04 16 3 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 4 N -0.72 -17.59 5.03 -53.43 -0.27 -17.86 16 5 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 9 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.14 2.38 2.62 -67.93 -0.18 2.20 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 15 C -0.16 -2.74 9.00 37.16 0.33 -2.41 16 16 N -0.71 -10.32 4.94 -54.75 -0.27 -10.59 16 17 C 0.55 8.51 7.74 -12.33 -0.10 8.42 16 18 O -0.54 -10.26 16.01 5.32 0.09 -10.18 16 19 C -0.13 -1.60 5.87 -104.97 -0.62 -2.21 16 20 C -0.06 -0.65 9.60 -39.19 -0.38 -1.03 16 21 C -0.12 -1.09 9.68 -39.64 -0.38 -1.47 16 22 C -0.06 -0.50 5.14 -104.53 -0.54 -1.04 16 23 C -0.08 -0.50 5.26 -27.89 -0.15 -0.64 16 24 C 0.06 0.38 4.94 -3.83 -0.02 0.36 16 25 N -0.55 -3.52 5.02 -251.26 -1.26 -4.78 16 26 C 0.02 0.13 9.57 60.06 0.57 0.70 16 27 C 0.02 0.10 9.32 60.07 0.56 0.66 16 28 C -0.12 -1.02 9.68 -39.64 -0.38 -1.41 16 29 C -0.08 -0.82 9.54 -39.19 -0.37 -1.19 16 30 H 0.03 0.40 6.29 -51.93 -0.33 0.07 16 31 H 0.05 0.92 6.56 -51.93 -0.34 0.58 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.39 10.01 5.77 -40.82 -0.24 9.77 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.48 6.29 -51.93 -0.33 1.15 16 37 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 38 H 0.40 4.70 4.61 -40.82 -0.19 4.52 16 39 H 0.14 1.57 7.65 -52.49 -0.40 1.17 16 40 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 41 H 0.07 0.42 6.49 -51.93 -0.34 0.09 16 42 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 43 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 44 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 45 H 0.03 0.14 8.14 -51.93 -0.42 -0.29 16 46 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 47 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 48 H 0.07 0.35 6.47 -51.93 -0.34 0.01 16 49 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 50 H 0.03 0.14 8.14 -51.93 -0.42 -0.29 16 51 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 52 H 0.13 1.02 6.41 -52.49 -0.34 0.68 16 LS Contribution 412.48 15.07 6.22 6.22 Total: -1.00 -32.21 412.48 -10.14 -42.35 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -8.59 Total: 10.43 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.75 Total: -5.67 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -1.08 Total: -60.36 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.21 -10.14 -42.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725111713.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.106 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds