Wall clock time and date at job start Tue Mar 31 2020 17:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46719 * 2 1 4 4 N 1.46494 * 109.46929 * 120.00283 * 2 1 3 5 5 C 1.36943 * 119.99938 * 274.99697 * 4 2 1 6 6 H 1.07997 * 120.00019 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99881 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99801 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99706 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47331 * 60.00338 * 9 7 5 11 11 H 1.48504 * 109.47237 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47565 * 300.00115 * 9 7 5 13 13 C 1.52998 * 109.46989 * 240.00406 * 2 1 3 14 14 H 1.08998 * 109.46926 * 174.99854 * 13 2 1 15 15 C 1.53008 * 109.46987 * 294.99658 * 13 2 1 16 16 N 1.46501 * 109.47277 * 54.99776 * 13 2 1 17 17 C 1.34776 * 119.99681 * 155.00042 * 16 13 2 18 18 O 1.21548 * 120.00618 * 0.02562 * 17 16 13 19 19 C 1.47849 * 119.99888 * 179.97438 * 17 16 13 20 20 C 1.39575 * 120.14553 * 180.02562 * 19 17 16 21 21 C 1.37956 * 119.85210 * 180.02562 * 20 19 17 22 22 C 1.38365 * 120.14727 * 0.02562 * 21 20 19 23 23 C 1.50694 * 119.85539 * 179.70485 * 22 21 20 24 24 C 1.53002 * 109.47433 * 89.99794 * 23 22 21 25 25 N 1.46893 * 109.47657 * 180.02562 * 24 23 22 26 26 C 1.46899 * 111.00558 * 170.00182 * 25 24 23 27 27 C 1.46910 * 111.00052 * 293.95682 * 25 24 23 28 28 C 1.38364 * 120.29020 * 359.97438 * 22 21 20 29 29 C 1.37956 * 120.14261 * 359.97438 * 28 22 21 30 30 H 1.09000 * 109.47614 * 59.99786 * 1 2 3 31 31 H 1.09007 * 109.47332 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47515 * 299.99687 * 1 2 3 33 33 H 0.97002 * 120.00069 * 95.00142 * 4 2 1 34 34 H 0.97005 * 119.99247 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.46991 * 179.97438 * 15 13 2 36 36 H 1.08990 * 109.46921 * 300.00278 * 15 13 2 37 37 H 1.09006 * 109.46839 * 60.00285 * 15 13 2 38 38 H 0.96994 * 119.99934 * 335.00049 * 16 13 2 39 39 H 1.08000 * 120.07314 * 359.97438 * 20 19 17 40 40 H 1.08004 * 119.92795 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.47360 * 210.00081 * 23 22 21 42 42 H 1.09002 * 109.47099 * 330.00301 * 23 22 21 43 43 H 1.09003 * 109.47082 * 300.00458 * 24 23 22 44 44 H 1.09007 * 109.47004 * 60.00022 * 24 23 22 45 45 H 1.09003 * 109.47010 * 59.99749 * 26 25 24 46 46 H 1.08997 * 109.47124 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.46892 * 300.00270 * 26 25 24 48 48 H 1.08997 * 109.46885 * 59.99213 * 27 25 24 49 49 H 1.08996 * 109.47459 * 179.97438 * 27 25 24 50 50 H 1.08999 * 109.46353 * 299.99743 * 27 25 24 51 51 H 1.07993 * 119.92264 * 180.02562 * 28 22 21 52 52 H 1.08000 * 120.06750 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0403 2.4244 7 6 2.6123 -0.6618 3.5090 8 7 2.9262 -1.9387 3.4495 9 14 2.7914 0.2702 5.1179 10 1 1.4692 0.8070 5.5288 11 1 3.3013 -0.6480 6.1677 12 1 3.7465 1.3926 4.9361 13 6 2.0400 -0.7212 -1.2493 14 1 3.1263 -0.6442 -1.2952 15 6 1.6352 -2.1955 -1.1880 16 7 1.4558 -0.1035 -2.4424 17 6 2.0912 -0.1936 -3.6275 18 8 3.1487 -0.7877 -3.7067 19 6 1.5014 0.4292 -4.8318 20 6 2.1566 0.3373 -6.0608 21 6 1.6010 0.9211 -7.1804 22 6 0.3974 1.5971 -7.0869 23 6 -0.2002 2.2381 -8.3128 24 6 -1.1113 1.2335 -9.0210 25 7 -1.6934 1.8581 -10.2164 26 6 -2.3812 0.8622 -11.0489 27 6 -2.6003 2.9540 -9.8491 28 6 -0.2572 1.6919 -5.8716 29 6 0.2870 1.1116 -4.7445 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6318 1.1525 34 1 3.2502 -2.3958 4.2414 35 1 1.9982 -2.7091 -2.0783 36 1 2.0699 -2.6549 -0.3004 37 1 0.5489 -2.2724 -1.1421 38 1 0.6118 0.3702 -2.3794 39 1 3.0967 -0.1890 -6.1348 40 1 2.1067 0.8504 -8.1321 41 1 -0.7819 3.1119 -8.0191 42 1 0.5983 2.5437 -8.9889 43 1 -0.5296 0.3597 -9.3148 44 1 -1.9099 0.9278 -8.3450 45 1 -3.1812 0.3972 -10.4728 46 1 -2.8031 1.3516 -11.9267 47 1 -1.6699 0.0990 -11.3646 48 1 -2.0483 3.7113 -9.2926 49 1 -3.0169 3.3991 -10.7526 50 1 -3.4082 2.5646 -9.2296 51 1 -1.1966 2.2206 -5.8055 52 1 -0.2252 1.1860 -3.7966 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725111713.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:48 Heat of formation + Delta-G solvation = -19.989007 kcal Electronic energy + Delta-G solvation = -27932.857430 eV Core-core repulsion = 24124.514575 eV Total energy + Delta-G solvation = -3808.342855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.41855 -39.96806 -38.54467 -38.14091 -35.66403 -34.33055 -33.47476 -31.96769 -31.13150 -29.88213 -29.65470 -28.43741 -26.26989 -26.09860 -24.91927 -23.60182 -23.31591 -21.94192 -21.20917 -20.73959 -19.55632 -18.90566 -17.32155 -16.92147 -16.65143 -16.48715 -16.19283 -16.09680 -15.92264 -15.72777 -15.63754 -15.37481 -15.18969 -14.75330 -14.53017 -14.24039 -14.02430 -13.98255 -13.77481 -13.47470 -13.21024 -13.12238 -13.01034 -12.83464 -12.77394 -12.67908 -12.64951 -12.44296 -12.18573 -12.16939 -12.12958 -12.01265 -11.67433 -11.63830 -11.60616 -11.02392 -10.94342 -10.21134 -9.95210 -9.69986 -9.30104 -9.03568 -7.93352 -5.22425 -0.17335 0.42070 1.48200 1.51143 1.57016 1.82278 2.07643 2.58525 2.82960 3.05427 3.40217 3.64185 3.79208 3.88433 3.95716 3.99788 4.03093 4.06457 4.10848 4.24089 4.30726 4.34127 4.43861 4.49489 4.52780 4.58397 4.64017 4.68063 4.72865 4.76561 4.85028 4.86179 4.94068 4.95363 5.00504 5.03584 5.05744 5.11156 5.18154 5.21734 5.23295 5.32032 5.40604 5.47615 5.54434 5.61204 5.62110 5.92962 6.07960 6.10820 6.28286 6.52117 7.18439 7.35040 8.08961 8.32415 9.29920 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.026114 B = 0.001804 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.957344 B =15513.286339 C =15945.243956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.047 0.953 4 N -0.733 5.733 5 C -0.240 4.240 6 H 0.078 0.922 7 C -0.075 4.075 8 N -0.969 5.969 9 Si 0.973 3.027 10 H -0.276 1.276 11 H -0.298 1.298 12 H -0.280 1.280 13 C 0.149 3.851 14 H 0.056 0.944 15 C -0.149 4.149 16 N -0.700 5.700 17 C 0.551 3.449 18 O -0.585 6.585 19 C -0.154 4.154 20 C -0.073 4.073 21 C -0.122 4.122 22 C -0.053 4.053 23 C -0.073 4.073 24 C 0.062 3.938 25 N -0.561 5.561 26 C 0.022 3.978 27 C 0.017 3.983 28 C -0.121 4.121 29 C -0.081 4.081 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.376 0.624 34 H 0.250 0.750 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.412 0.588 39 H 0.121 0.879 40 H 0.147 0.853 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.035 0.965 45 H 0.025 0.975 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.026 0.974 51 H 0.154 0.846 52 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.132 10.115 -29.990 34.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.056 3.944 3 H 0.065 0.935 4 N -0.376 5.376 5 C -0.372 4.372 6 H 0.096 0.904 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.802 3.198 10 H -0.202 1.202 11 H -0.224 1.224 12 H -0.207 1.207 13 C 0.043 3.957 14 H 0.074 0.926 15 C -0.208 4.208 16 N -0.354 5.354 17 C 0.340 3.660 18 O -0.466 6.466 19 C -0.157 4.157 20 C -0.092 4.092 21 C -0.140 4.140 22 C -0.054 4.054 23 C -0.110 4.110 24 C -0.066 4.066 25 N -0.285 5.285 26 C -0.126 4.126 27 C -0.130 4.130 28 C -0.139 4.139 29 C -0.100 4.100 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.210 0.790 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.252 0.748 39 H 0.139 0.861 40 H 0.165 0.835 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.043 0.957 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.045 0.955 51 H 0.172 0.828 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.024 10.038 -30.172 34.362 hybrid contribution -0.294 -0.580 1.846 1.957 sum -13.318 9.458 -28.325 32.698 Atomic orbital electron populations 1.22365 0.96450 1.01728 1.01249 1.20526 0.94012 0.94845 0.84967 0.93474 1.42634 1.78682 1.10510 1.05756 1.19588 1.35212 0.94328 0.88081 0.90404 1.25547 1.02827 0.96884 1.01482 1.69818 1.52414 1.10250 1.29493 0.85219 0.77979 0.77218 0.79364 1.20174 1.22428 1.20670 1.20928 0.97378 0.93216 0.84182 0.92555 1.22030 1.02384 0.95278 1.01080 1.45924 1.26066 1.56234 1.07180 1.18840 0.83845 0.79195 0.84083 1.90743 1.24443 1.45186 1.86274 1.19879 0.98310 1.04322 0.93186 1.21318 0.99255 0.97014 0.91655 1.21227 0.96156 0.98094 0.98555 1.20271 0.93947 0.95561 0.95617 1.20617 0.99576 0.97858 0.92970 1.22078 0.97198 0.96844 0.90477 1.62004 1.35285 1.11893 1.19269 1.22416 0.97598 0.95207 0.97346 1.22511 0.94916 0.94356 1.01265 1.21286 1.01019 1.00240 0.91352 1.21523 0.93262 0.94857 1.00334 0.90580 0.92887 0.93577 0.78971 0.94098 0.93196 0.92742 0.90731 0.74842 0.86050 0.83545 0.89433 0.89578 0.90868 0.94647 0.95650 0.90572 0.91180 0.90389 0.90874 0.95501 0.82831 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.92 9.01 71.98 0.65 -4.27 16 2 C 0.17 6.32 2.93 44.99 0.13 6.45 16 3 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 4 N -0.73 -36.42 5.03 -322.95 -1.63 -38.05 16 5 C -0.24 -13.17 9.93 84.03 0.83 -12.33 16 6 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 8 N -0.97 -59.43 13.06 21.65 0.28 -59.15 16 9 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 13 C 0.15 5.28 2.62 44.99 0.12 5.39 16 14 H 0.06 2.38 7.58 -2.39 -0.02 2.37 16 15 C -0.15 -5.22 9.00 71.98 0.65 -4.57 16 16 N -0.70 -19.61 4.94 -445.40 -2.20 -21.81 16 17 C 0.55 17.06 7.74 86.79 0.67 17.73 16 18 O -0.59 -23.27 16.01 -3.87 -0.06 -23.34 16 19 C -0.15 -3.63 5.87 -20.09 -0.12 -3.75 16 20 C -0.07 -1.62 9.60 22.53 0.22 -1.41 16 21 C -0.12 -1.94 9.68 22.23 0.22 -1.73 16 22 C -0.05 -0.69 5.14 -19.81 -0.10 -0.79 16 23 C -0.07 -0.68 5.26 29.85 0.16 -0.52 16 24 C 0.06 0.63 4.94 86.31 0.43 1.06 16 25 N -0.56 -5.87 5.02 -948.84 -4.76 -10.63 16 26 C 0.02 0.20 9.57 127.69 1.22 1.42 16 27 C 0.02 0.14 9.32 127.69 1.19 1.33 16 28 C -0.12 -1.55 9.68 22.23 0.22 -1.34 16 29 C -0.08 -1.35 9.54 22.53 0.21 -1.14 16 30 H 0.08 1.66 6.29 -2.39 -0.02 1.65 16 31 H 0.05 1.67 6.56 -2.38 -0.02 1.66 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.38 20.13 5.77 -92.71 -0.54 19.59 16 34 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 2.16 6.29 -2.39 -0.02 2.15 16 37 H 0.07 2.30 6.56 -2.38 -0.02 2.28 16 38 H 0.41 8.69 4.61 -92.71 -0.43 8.26 16 39 H 0.12 2.96 7.65 -2.91 -0.02 2.94 16 40 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 41 H 0.09 0.64 6.49 -2.39 -0.02 0.62 16 42 H 0.09 0.82 8.08 -2.39 -0.02 0.80 16 43 H 0.07 0.81 8.06 -2.39 -0.02 0.79 16 44 H 0.04 0.38 8.12 -2.38 -0.02 0.36 16 45 H 0.02 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.08 0.55 8.12 -2.39 -0.02 0.53 16 47 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 48 H 0.08 0.51 6.47 -2.39 -0.02 0.49 16 49 H 0.07 0.49 8.12 -2.39 -0.02 0.48 16 50 H 0.03 0.21 8.14 -2.39 -0.02 0.19 16 51 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 52 H 0.15 1.77 6.41 -2.91 -0.02 1.75 16 Total: -1.00 -71.66 412.48 0.77 -70.89 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -0.05 Total: 36.30 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 7.16 Total: -2.29 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -8.30 Total: -129.64 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.06 Total: -23.34 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -71.66 0.77 -70.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725111713.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.898 kcal (2) G-P(sol) polarization free energy of solvation -71.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds