Wall clock time and date at job start Tue Mar 31 2020 17:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47564 * 2 1 4 4 C 1.53003 * 109.46949 * 240.00065 * 2 1 3 5 5 C 1.50698 * 109.46926 * 65.00047 * 4 2 1 6 6 O 1.21284 * 120.00267 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00069 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00141 * 0.02562 * 7 5 4 9 9 C 1.46504 * 120.00261 * 180.02562 * 7 5 4 10 10 C 1.52998 * 109.47433 * 89.99799 * 9 7 5 11 11 C 1.53001 * 109.46780 * 300.00012 * 10 9 7 12 12 C 1.53002 * 109.46981 * 60.00100 * 10 9 7 13 13 C 1.52998 * 109.46975 * 180.02562 * 10 9 7 14 14 N 1.46509 * 109.46879 * 179.97438 * 13 10 9 15 15 C 1.36933 * 119.99820 * 180.02562 * 14 13 10 16 16 H 1.08000 * 120.00203 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00170 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99588 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00154 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47067 * 89.99789 * 19 17 15 21 21 H 1.48509 * 109.46866 * 209.99778 * 19 17 15 22 22 H 1.48495 * 109.47003 * 329.99573 * 19 17 15 23 23 C 1.50703 * 109.47193 * 120.00465 * 2 1 3 24 24 C 1.38655 * 120.78758 * 239.99540 * 23 2 1 25 25 C 1.38197 * 119.15875 * 179.97438 * 24 23 2 26 26 N 1.31874 * 120.76735 * 359.97438 * 25 24 23 27 27 C 1.31868 * 121.72350 * 0.02562 * 26 25 24 28 28 C 1.38198 * 120.76515 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47059 * 299.99835 * 1 2 3 30 30 H 1.08996 * 109.47243 * 59.99512 * 1 2 3 31 31 H 1.08999 * 109.47564 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47205 * 184.99779 * 4 2 1 33 33 H 1.09002 * 109.47245 * 305.00054 * 4 2 1 34 34 H 1.08998 * 109.47340 * 89.99855 * 8 7 5 35 35 H 1.08997 * 109.47434 * 210.00574 * 8 7 5 36 36 H 1.09000 * 109.46835 * 330.00057 * 8 7 5 37 37 H 1.09004 * 109.47024 * 210.00427 * 9 7 5 38 38 H 1.09001 * 109.46443 * 329.99558 * 9 7 5 39 39 H 1.09003 * 109.47180 * 60.00729 * 11 10 9 40 40 H 1.09002 * 109.46986 * 179.97438 * 11 10 9 41 41 H 1.08994 * 109.47593 * 299.99780 * 11 10 9 42 42 H 1.08999 * 109.46784 * 60.00250 * 12 10 9 43 43 H 1.09000 * 109.46920 * 179.97438 * 12 10 9 44 44 H 1.08995 * 109.47147 * 300.00019 * 12 10 9 45 45 H 1.08997 * 109.47099 * 299.99528 * 13 10 9 46 46 H 1.09004 * 109.47083 * 60.00274 * 13 10 9 47 47 H 0.97000 * 119.99898 * 0.02562 * 14 13 10 48 48 H 0.97001 * 119.99607 * 179.97438 * 18 17 15 49 49 H 1.07995 * 120.41666 * 359.96253 * 24 23 2 50 50 H 1.07994 * 119.61835 * 180.02562 * 25 24 23 51 51 H 1.07999 * 119.61410 * 179.97438 * 27 26 25 52 52 H 1.08005 * 120.41632 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0108 1.0870 -2.3633 7 7 1.9851 -0.3913 -3.7001 8 6 2.7461 -1.6356 -3.8371 9 6 1.5980 0.3657 -4.8932 10 6 2.6958 1.3750 -5.2354 11 6 2.8880 2.3369 -4.0613 12 6 4.0056 0.6318 -5.5057 13 6 2.2912 2.1659 -6.4810 14 7 3.3421 3.1328 -6.8083 15 6 3.1996 3.9585 -7.8914 16 1 2.3127 3.8967 -8.5045 17 6 4.1955 4.8742 -8.2018 18 7 5.2766 4.9492 -7.4548 19 14 4.0014 6.0001 -9.6797 20 1 3.3241 7.2536 -9.2613 21 1 5.3402 6.3226 -10.2355 22 1 3.1857 5.3191 -10.7170 23 6 2.0323 -0.7105 1.2304 24 6 2.8305 -0.0526 2.1538 25 6 3.2720 -0.7364 3.2706 26 7 2.9422 -1.9987 3.4628 27 6 2.1851 -2.6558 2.6061 28 6 1.7073 -2.0376 1.4661 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1262 -0.7995 -1.2057 33 1 1.6053 -1.7198 -1.2952 34 1 2.0568 -2.4755 -3.9232 35 1 3.3693 -1.5840 -4.7299 36 1 3.3785 -1.7731 -2.9601 37 1 1.4610 -0.3197 -5.7297 38 1 0.6649 0.8950 -4.7006 39 1 3.1762 1.7737 -3.1736 40 1 3.6705 3.0557 -4.3048 41 1 1.9550 2.8664 -3.8687 42 1 3.8685 -0.0535 -6.3422 43 1 4.7876 1.3508 -5.7499 44 1 4.2937 0.0687 -4.6180 45 1 2.1539 1.4808 -7.3177 46 1 1.3581 2.6953 -6.2880 47 1 4.1388 3.1880 -6.2578 48 1 5.9727 5.5888 -7.6720 49 1 3.1038 0.9812 2.0020 50 1 3.8937 -0.2311 3.9947 51 1 1.9361 -3.6891 2.7971 52 1 1.0873 -2.5810 0.7684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725143907.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:14 Heat of formation + Delta-G solvation = -18.078293 kcal Electronic energy + Delta-G solvation = -29212.833502 eV Core-core repulsion = 25404.573502 eV Total energy + Delta-G solvation = -3808.260000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.56847 -40.91632 -38.86620 -36.73861 -36.23769 -34.85903 -32.36401 -32.11953 -31.76441 -29.42365 -28.73926 -27.89154 -27.28433 -26.35344 -25.19218 -24.38077 -24.13147 -21.69533 -20.18357 -19.73671 -19.10453 -18.33351 -17.38399 -17.16491 -17.09624 -16.80089 -16.45757 -16.33447 -15.70056 -15.50908 -15.27548 -15.01492 -14.77500 -14.63476 -14.40054 -14.20180 -14.16859 -13.94238 -13.78967 -13.67834 -13.40312 -13.14159 -12.95670 -12.79123 -12.71672 -12.55995 -12.49975 -12.36093 -12.22462 -12.16465 -12.09272 -11.73349 -11.64360 -11.61587 -11.46464 -10.94125 -10.63807 -10.44129 -10.34874 -10.03204 -9.48674 -8.97476 -7.94881 -5.22542 0.25683 0.32473 1.45599 1.47885 1.56083 1.74805 2.12224 2.56252 2.91471 3.38297 3.44037 3.65246 3.70069 3.85190 3.86953 3.97485 3.99016 4.09888 4.16993 4.25573 4.27734 4.28508 4.38542 4.47033 4.51088 4.60612 4.67130 4.68661 4.74307 4.79957 4.83920 4.86834 4.92600 4.93733 4.94941 4.96269 5.03211 5.11427 5.15849 5.17875 5.18066 5.20380 5.39953 5.45836 5.48953 5.52989 5.55805 5.64800 5.83618 6.27719 6.52892 7.08388 7.32467 7.34096 8.11622 8.35257 9.28926 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.022069 B = 0.002171 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.442720 B =12893.234940 C =13267.133092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.033 4.033 3 H 0.070 0.930 4 C -0.122 4.122 5 C 0.505 3.495 6 O -0.568 6.568 7 N -0.609 5.609 8 C 0.063 3.937 9 C 0.137 3.863 10 C -0.076 4.076 11 C -0.106 4.106 12 C -0.126 4.126 13 C 0.162 3.838 14 N -0.739 5.739 15 C -0.243 4.243 16 H 0.074 0.926 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.974 3.026 20 H -0.290 1.290 21 H -0.294 1.294 22 H -0.268 1.268 23 C -0.035 4.035 24 C -0.178 4.178 25 C 0.088 3.912 26 N -0.519 5.519 27 C 0.089 3.911 28 C -0.163 4.163 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.024 0.976 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.028 0.972 44 H 0.073 0.927 45 H 0.028 0.972 46 H 0.008 0.992 47 H 0.376 0.624 48 H 0.250 0.750 49 H 0.140 0.860 50 H 0.169 0.831 51 H 0.177 0.823 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.249 -21.803 18.253 29.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.052 4.052 3 H 0.088 0.912 4 C -0.162 4.162 5 C 0.295 3.705 6 O -0.448 6.448 7 N -0.341 5.341 8 C -0.079 4.079 9 C 0.013 3.987 10 C -0.077 4.077 11 C -0.163 4.163 12 C -0.184 4.184 13 C 0.035 3.965 14 N -0.383 5.383 15 C -0.375 4.375 16 H 0.092 0.908 17 C -0.270 4.270 18 N -0.622 5.622 19 Si 0.803 3.197 20 H -0.217 1.217 21 H -0.221 1.221 22 H -0.193 1.193 23 C -0.043 4.043 24 C -0.198 4.198 25 C -0.068 4.068 26 N -0.229 5.229 27 C -0.067 4.067 28 C -0.183 4.183 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.141 0.859 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.092 0.908 45 H 0.046 0.954 46 H 0.026 0.974 47 H 0.209 0.791 48 H 0.059 0.941 49 H 0.158 0.842 50 H 0.186 0.814 51 H 0.194 0.806 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.368 -21.670 18.899 29.682 hybrid contribution 0.205 1.865 -1.421 2.354 sum -7.163 -19.804 17.478 27.368 Atomic orbital electron populations 1.21876 0.93414 1.02518 1.02211 1.19819 0.96807 0.98564 0.90014 0.91196 1.21761 1.03709 1.00684 0.90042 1.21083 0.78825 0.85295 0.85299 1.90702 1.41533 1.25931 1.86615 1.47868 1.55563 1.25308 1.05322 1.22233 0.96584 0.84515 1.04534 1.21290 0.96037 0.93722 0.87680 1.21004 0.97041 0.95404 0.94274 1.21526 0.99835 0.98032 0.96924 1.21798 0.95585 0.99423 1.01544 1.20754 0.90654 0.90619 0.94497 1.42584 1.21204 1.41934 1.32537 1.19651 1.02328 1.11642 1.03844 0.90802 1.25561 0.96836 1.02093 1.02496 1.69825 1.09866 1.40213 1.42250 0.85130 0.76438 0.78823 0.79319 1.21719 1.22085 1.19299 1.20359 0.94283 0.94428 0.95208 1.22295 0.99544 1.02169 0.95811 1.23044 0.97103 0.90319 0.96298 1.67698 1.13561 1.09910 1.31713 1.23197 0.92580 1.00944 0.89982 1.22226 1.01682 0.94781 0.99579 0.93198 0.92132 0.91160 0.87622 0.85929 0.90319 0.90132 0.89333 0.88327 0.91577 0.92980 0.95641 0.94555 0.91806 0.95244 0.90811 0.95428 0.97360 0.79096 0.94081 0.84172 0.81383 0.80614 0.82439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.76 71.98 0.63 -1.79 16 2 C -0.03 -0.53 2.24 -11.54 -0.03 -0.56 16 3 H 0.07 1.44 7.76 -2.39 -0.02 1.43 16 4 C -0.12 -1.65 3.48 29.85 0.10 -1.55 16 5 C 0.51 10.86 5.80 87.66 0.51 11.37 16 6 O -0.57 -17.12 11.74 -3.04 -0.04 -17.15 16 7 N -0.61 -11.69 2.40 -846.76 -2.03 -13.72 16 8 C 0.06 0.68 9.15 127.77 1.17 1.85 16 9 C 0.14 3.39 4.60 86.38 0.40 3.78 16 10 C -0.08 -2.44 0.60 -52.18 -0.03 -2.47 16 11 C -0.11 -3.88 6.96 71.98 0.50 -3.38 16 12 C -0.13 -3.73 7.05 71.98 0.51 -3.23 16 13 C 0.16 6.64 5.15 86.38 0.44 7.08 16 14 N -0.74 -38.53 5.00 -343.44 -1.72 -40.25 16 15 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 16 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 17 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 18 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 19 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 C -0.03 -0.50 4.80 -19.67 -0.09 -0.59 16 24 C -0.18 -2.74 9.76 22.36 0.22 -2.53 16 25 C 0.09 1.41 11.18 84.68 0.95 2.35 16 26 N -0.52 -9.33 10.36 -195.86 -2.03 -11.36 16 27 C 0.09 1.18 11.18 84.68 0.95 2.13 16 28 C -0.16 -1.86 8.89 22.36 0.20 -1.66 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.36 5.95 -2.39 -0.01 1.35 16 31 H 0.07 0.88 7.48 -2.39 -0.02 0.86 16 32 H 0.11 1.21 7.40 -2.39 -0.02 1.19 16 33 H 0.12 0.94 7.63 -2.39 -0.02 0.93 16 34 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.08 0.93 6.05 -2.39 -0.01 0.91 16 36 H 0.09 0.64 6.44 -2.39 -0.02 0.63 16 37 H 0.10 1.99 8.07 -2.38 -0.02 1.97 16 38 H 0.07 1.91 7.42 -2.39 -0.02 1.89 16 39 H 0.05 1.72 6.15 -2.39 -0.01 1.70 16 40 H 0.02 1.07 6.86 -2.39 -0.02 1.06 16 41 H 0.04 1.45 7.73 -2.39 -0.02 1.43 16 42 H 0.06 1.69 8.08 -2.39 -0.02 1.67 16 43 H 0.03 1.09 6.86 -2.39 -0.02 1.07 16 44 H 0.07 1.74 5.99 -2.39 -0.01 1.73 16 45 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 47 H 0.38 20.83 5.36 -92.71 -0.50 20.33 16 48 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 49 H 0.14 1.90 8.01 -2.91 -0.02 1.88 16 50 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 51 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 52 H 0.16 0.95 7.35 -2.91 -0.02 0.93 16 Total: -1.00 -75.55 399.94 4.63 -70.92 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.41 Total: 29.16 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 7.73 Total: -6.38 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -5.50 Total: -125.72 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.04 Total: -17.15 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -75.55 4.63 -70.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725143907.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.843 kcal (2) G-P(sol) polarization free energy of solvation -75.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds