Wall clock time and date at job start Tue Mar 31 2020 17:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47237 * 2 1 4 4 C 1.53004 * 109.47170 * 240.00595 * 2 1 3 5 5 C 1.50698 * 109.47177 * 64.99575 * 4 2 1 6 6 O 1.21281 * 119.99792 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99934 * 180.02562 * 5 4 2 8 8 C 1.46503 * 120.00109 * 180.27626 * 7 5 4 9 9 C 1.52998 * 109.47198 * 179.72415 * 8 7 5 10 10 H 1.09000 * 109.44995 * 294.94553 * 9 8 7 11 11 C 1.54859 * 109.44876 * 175.00245 * 9 8 7 12 12 C 1.47094 * 110.32543 * 168.69654 * 11 9 8 13 13 C 1.52564 * 114.32608 * 62.79761 * 12 11 9 14 14 C 1.50886 * 109.35850 * 274.99148 * 13 12 11 15 15 C 1.53946 * 110.09455 * 91.88831 * 14 13 12 16 16 N 1.44578 * 109.44988 * 54.87094 * 9 8 7 17 17 C 1.36939 * 118.64308 * 30.76397 * 16 9 8 18 18 H 1.07994 * 120.00017 * 27.75484 * 17 16 9 19 19 C 1.38816 * 119.99741 * 207.75882 * 17 16 9 20 20 N 1.31613 * 120.00243 * 14.60108 * 19 17 16 21 21 Si 1.86801 * 119.99597 * 194.61015 * 19 17 16 22 22 H 1.48497 * 109.47466 * 59.99836 * 21 19 17 23 23 H 1.48500 * 109.47039 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47053 * 299.99253 * 21 19 17 25 25 N 1.46498 * 109.47423 * 120.00729 * 2 1 3 26 26 C 1.36343 * 125.63749 * 59.68945 * 25 2 1 27 27 C 1.34852 * 108.21457 * 179.83659 * 26 25 2 28 28 C 1.40890 * 107.41916 * 0.42194 * 27 26 25 29 29 C 1.34843 * 107.41785 * 359.74009 * 28 27 26 30 30 H 1.09001 * 109.47128 * 299.99419 * 1 2 3 31 31 H 1.08994 * 109.47690 * 59.99576 * 1 2 3 32 32 H 1.09000 * 109.47237 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46666 * 304.99907 * 4 2 1 34 34 H 1.08996 * 109.47210 * 185.00216 * 4 2 1 35 35 H 0.97005 * 120.00302 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.46972 * 299.72402 * 8 7 5 37 37 H 1.09002 * 109.47069 * 59.72566 * 8 7 5 38 38 H 1.09004 * 109.32610 * 288.95198 * 11 9 8 39 39 H 1.09000 * 109.33453 * 48.60199 * 11 9 8 40 40 H 1.08995 * 108.51500 * 184.05444 * 12 11 9 41 41 H 1.09007 * 108.50750 * 301.70067 * 12 11 9 42 42 H 1.08996 * 109.49475 * 34.95890 * 13 12 11 43 43 H 1.09000 * 109.48790 * 155.02829 * 13 12 11 44 44 H 1.09003 * 109.36183 * 212.08057 * 14 13 12 45 45 H 1.08997 * 109.36970 * 331.69106 * 14 13 12 46 46 H 1.09007 * 108.94571 * 80.11820 * 15 14 13 47 47 H 1.09000 * 108.94620 * 198.74621 * 15 14 13 48 48 H 0.96996 * 120.00108 * 180.02562 * 20 19 17 49 49 H 1.07995 * 125.89000 * 359.95966 * 26 25 2 50 50 H 1.08003 * 126.28473 * 180.16386 * 27 26 25 51 51 H 1.08004 * 126.29032 * 179.73458 * 28 27 26 52 52 H 1.08004 * 125.89235 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6412 0.0572 -2.4766 6 8 1.0115 1.0875 -2.3631 7 7 1.9843 -0.3916 -3.7002 8 6 1.6019 0.3682 -4.8930 9 6 2.1162 -0.3504 -6.1420 10 1 3.2062 -0.3502 -6.1379 11 6 1.6052 0.3835 -7.4063 12 6 2.2972 -0.1185 -8.6032 13 6 2.0514 -1.5950 -8.8984 14 6 3.0207 -2.4326 -8.1012 15 6 2.3940 -2.8257 -6.7512 16 7 1.6355 -1.7139 -6.1452 17 6 0.4266 -1.9851 -5.5618 18 1 -0.3352 -1.2209 -5.5176 19 6 0.1805 -3.2423 -5.0272 20 7 1.1778 -4.0751 -4.8174 21 14 -1.5665 -3.7522 -4.6057 22 1 -2.4030 -3.7138 -5.8321 23 1 -1.5603 -5.1311 -4.0543 24 1 -2.1250 -2.8174 -3.5960 25 7 2.0183 -0.6907 1.1960 26 6 1.7559 -1.9869 1.5277 27 6 2.3800 -2.2588 2.6918 28 6 3.0442 -1.0848 3.0985 29 6 2.8055 -0.1418 2.1646 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6053 -1.7198 -1.2953 34 1 3.1262 -0.7994 -1.2057 35 1 2.4876 -1.2159 -3.7910 36 1 0.5159 0.4473 -4.9406 37 1 2.0372 1.3663 -4.8430 38 1 0.5334 0.2157 -7.5123 39 1 1.7947 1.4521 -7.3046 40 1 1.9694 0.4656 -9.4631 41 1 3.3688 0.0322 -8.4721 42 1 1.0305 -1.8565 -8.6201 43 1 2.1981 -1.7825 -9.9621 44 1 3.2656 -3.3344 -8.6624 45 1 3.9317 -1.8610 -7.9241 46 1 1.7219 -3.6700 -6.9055 47 1 3.1873 -3.1273 -6.0672 48 1 1.0058 -4.9537 -4.4442 49 1 1.1540 -2.6774 0.9556 50 1 2.3688 -3.2020 3.2179 51 1 3.6357 -0.9625 3.9938 52 1 3.1740 0.8733 2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725239754.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:02 Heat of formation + Delta-G solvation = 24.509314 kcal Electronic energy + Delta-G solvation = -30269.886083 eV Core-core repulsion = 26463.472820 eV Total energy + Delta-G solvation = -3806.413263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.12801 -39.35523 -38.15191 -35.08132 -34.34539 -33.52997 -31.85121 -30.76339 -29.72119 -28.63092 -28.15206 -26.69487 -25.51844 -23.53646 -22.90425 -21.88080 -20.40047 -20.09676 -19.63635 -19.27586 -19.08365 -17.41432 -16.68640 -15.82405 -15.74272 -15.23372 -15.12012 -14.65514 -14.42377 -14.20488 -13.93673 -13.64176 -13.58990 -13.38898 -13.19823 -12.90032 -12.57282 -12.43317 -12.19048 -12.14087 -12.00017 -11.95601 -11.76522 -11.45219 -11.28032 -11.22950 -11.09916 -10.97434 -10.88831 -10.67646 -10.26847 -10.08069 -10.03658 -9.75591 -9.63991 -9.62047 -9.31130 -8.49052 -8.48469 -8.28211 -8.02604 -6.77355 -5.88943 -3.33719 2.42782 2.97213 3.14500 3.18581 3.30654 3.36561 3.39971 3.91215 4.40665 4.65285 4.89634 5.10306 5.14165 5.17119 5.28365 5.35561 5.38634 5.43025 5.47110 5.55789 5.59822 5.68812 5.71936 5.76282 5.84352 5.93232 5.96920 6.02367 6.03664 6.09846 6.24720 6.33549 6.34359 6.40034 6.47340 6.51325 6.56437 6.60376 6.65709 6.70560 6.79944 6.93678 7.05377 7.13053 7.17603 7.35704 7.39623 7.53610 7.61347 7.74970 8.20285 8.35763 8.80116 9.13557 9.78148 10.23286 11.17567 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013269 B = 0.003497 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.656432 B = 8005.245392 C = 8856.272467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.151 3.849 3 H 0.103 0.897 4 C -0.151 4.151 5 C 0.517 3.483 6 O -0.565 6.565 7 N -0.685 5.685 8 C 0.129 3.871 9 C 0.174 3.826 10 H 0.044 0.956 11 C -0.136 4.136 12 C -0.101 4.101 13 C -0.107 4.107 14 C -0.143 4.143 15 C 0.180 3.820 16 N -0.584 5.584 17 C -0.250 4.250 18 H 0.062 0.938 19 C 0.013 3.987 20 N -0.903 5.903 21 Si 0.891 3.109 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.284 1.284 25 N -0.440 5.440 26 C -0.008 4.008 27 C -0.209 4.209 28 C -0.207 4.207 29 C -0.018 4.018 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.412 0.588 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.039 0.961 44 H 0.049 0.951 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.024 0.976 48 H 0.254 0.746 49 H 0.158 0.842 50 H 0.131 0.869 51 H 0.130 0.870 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.578 5.756 4.313 8.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.121 0.879 4 C -0.191 4.191 5 C 0.302 3.698 6 O -0.446 6.446 7 N -0.334 5.334 8 C 0.005 3.995 9 C 0.064 3.936 10 H 0.062 0.938 11 C -0.177 4.177 12 C -0.139 4.139 13 C -0.144 4.144 14 C -0.182 4.182 15 C 0.056 3.944 16 N -0.306 5.306 17 C -0.380 4.380 18 H 0.080 0.920 19 C -0.186 4.186 20 N -0.547 5.547 21 Si 0.721 3.279 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.210 1.210 25 N -0.115 5.115 26 C -0.138 4.138 27 C -0.233 4.233 28 C -0.232 4.232 29 C -0.148 4.148 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.249 0.751 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.042 0.958 48 H 0.064 0.936 49 H 0.175 0.825 50 H 0.149 0.851 51 H 0.148 0.852 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.043 6.459 4.119 8.662 hybrid contribution -0.716 -0.943 0.090 1.187 sum 3.327 5.516 4.209 7.695 Atomic orbital electron populations 1.22274 0.92888 1.02960 1.04150 1.21102 0.96014 0.96325 0.81639 0.87879 1.21952 1.03285 1.01392 0.92512 1.20024 0.79676 0.85361 0.84735 1.90612 1.41573 1.25456 1.86983 1.45671 1.55723 1.27302 1.04694 1.21488 1.00736 0.92851 0.84450 1.20502 0.95810 0.86249 0.90989 0.93800 1.21378 1.01307 0.98215 0.96808 1.20291 0.99738 0.96459 0.97373 1.20947 1.01552 0.94545 0.97378 1.22069 0.98058 0.98709 0.99376 1.21008 0.94822 0.90255 0.88343 1.43718 1.21168 1.01228 1.64450 1.18987 0.90517 0.97628 1.30824 0.92020 1.24906 0.96657 0.98413 0.98626 1.70008 1.28952 1.08503 1.47251 0.86555 0.85443 0.77551 0.78362 1.21123 1.21702 1.21000 1.44438 1.38716 1.10308 1.18047 1.21807 1.06201 0.86372 0.99458 1.20847 1.05015 0.99241 0.98230 1.20825 1.07173 0.94042 1.01184 1.21809 1.01647 0.99669 0.91686 0.92427 0.88381 0.92325 0.87936 0.88779 0.75139 0.91366 0.93211 0.91816 0.93337 0.94073 0.93542 0.90795 0.94194 0.93259 0.93843 0.90736 0.95816 0.93627 0.82488 0.85132 0.85186 0.82601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 8.97 37.15 0.33 -2.01 16 2 C 0.15 2.07 2.67 -67.93 -0.18 1.89 16 3 H 0.10 1.38 7.88 -51.93 -0.41 0.97 16 4 C -0.15 -2.20 5.17 -27.88 -0.14 -2.34 16 5 C 0.52 8.97 7.55 -10.99 -0.08 8.88 16 6 O -0.56 -10.92 13.97 5.56 0.08 -10.84 16 7 N -0.69 -12.32 4.71 -60.29 -0.28 -12.60 16 8 C 0.13 2.32 4.53 -4.04 -0.02 2.31 16 9 C 0.17 3.09 2.19 -67.98 -0.15 2.94 16 10 H 0.04 0.77 8.06 -51.93 -0.42 0.36 16 11 C -0.14 -2.20 5.06 -28.59 -0.14 -2.34 16 12 C -0.10 -1.53 5.16 -29.79 -0.15 -1.68 16 13 C -0.11 -1.75 5.51 -28.02 -0.15 -1.91 16 14 C -0.14 -2.46 5.71 -27.30 -0.16 -2.62 16 15 C 0.18 3.77 4.66 -2.94 -0.01 3.76 16 16 N -0.58 -12.11 1.77 -164.47 -0.29 -12.40 16 17 C -0.25 -5.87 7.64 -15.06 -0.12 -5.99 16 18 H 0.06 1.52 6.72 -52.49 -0.35 1.17 16 19 C 0.01 0.31 4.89 -17.43 -0.09 0.23 16 20 N -0.90 -22.89 11.03 55.49 0.61 -22.28 16 21 Si 0.89 20.50 29.58 -169.99 -5.03 15.47 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 N -0.44 -5.94 2.62 -110.02 -0.29 -6.22 16 26 C -0.01 -0.11 10.45 -16.75 -0.18 -0.28 16 27 C -0.21 -2.78 10.86 -39.78 -0.43 -3.21 16 28 C -0.21 -2.65 10.86 -39.78 -0.43 -3.08 16 29 C -0.02 -0.23 11.39 -16.75 -0.19 -0.42 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 1.58 5.95 -51.93 -0.31 1.27 16 32 H 0.06 0.83 7.91 -51.93 -0.41 0.42 16 33 H 0.10 1.57 8.06 -51.92 -0.42 1.16 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.41 7.79 8.07 -40.82 -0.33 7.46 16 36 H 0.07 1.37 6.83 -51.93 -0.35 1.02 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.70 8.11 -51.93 -0.42 0.27 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.68 7.35 -51.92 -0.38 0.29 16 42 H 0.07 1.41 7.48 -51.93 -0.39 1.02 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16 46 H 0.07 1.79 6.40 -51.93 -0.33 1.45 16 47 H 0.02 0.54 8.02 -51.93 -0.42 0.12 16 48 H 0.25 6.47 8.31 -40.82 -0.34 6.13 16 49 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 50 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 51 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 52 H 0.16 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 399.95 15.07 6.03 6.03 Total: -1.00 -25.80 399.95 -10.58 -36.38 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -9.11 Total: 12.35 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.29 Total: -5.88 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.25 Total: -53.50 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -25.80 -10.58 -36.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725239754.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.891 kcal (2) G-P(sol) polarization free energy of solvation -25.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds