Wall clock time and date at job start Tue Mar 31 2020 17:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47237 * 2 1 4 4 C 1.53004 * 109.47170 * 240.00595 * 2 1 3 5 5 C 1.50698 * 109.47177 * 64.99575 * 4 2 1 6 6 O 1.21281 * 119.99792 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99934 * 180.02562 * 5 4 2 8 8 C 1.46503 * 120.00109 * 180.27626 * 7 5 4 9 9 C 1.52998 * 109.47198 * 179.72415 * 8 7 5 10 10 H 1.09000 * 109.44995 * 294.94553 * 9 8 7 11 11 C 1.54859 * 109.44876 * 175.00245 * 9 8 7 12 12 C 1.47094 * 110.32543 * 168.69654 * 11 9 8 13 13 C 1.52564 * 114.32608 * 62.79761 * 12 11 9 14 14 C 1.50886 * 109.35850 * 274.99148 * 13 12 11 15 15 C 1.53946 * 110.09455 * 91.88831 * 14 13 12 16 16 N 1.44578 * 109.44988 * 54.87094 * 9 8 7 17 17 C 1.36939 * 118.64308 * 30.76397 * 16 9 8 18 18 H 1.07994 * 120.00017 * 27.75484 * 17 16 9 19 19 C 1.38816 * 119.99741 * 207.75882 * 17 16 9 20 20 N 1.31613 * 120.00243 * 14.60108 * 19 17 16 21 21 Si 1.86801 * 119.99597 * 194.61015 * 19 17 16 22 22 H 1.48497 * 109.47466 * 59.99836 * 21 19 17 23 23 H 1.48500 * 109.47039 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47053 * 299.99253 * 21 19 17 25 25 N 1.46498 * 109.47423 * 120.00729 * 2 1 3 26 26 C 1.36343 * 125.63749 * 59.68945 * 25 2 1 27 27 C 1.34852 * 108.21457 * 179.83659 * 26 25 2 28 28 C 1.40890 * 107.41916 * 0.42194 * 27 26 25 29 29 C 1.34843 * 107.41785 * 359.74009 * 28 27 26 30 30 H 1.09001 * 109.47128 * 299.99419 * 1 2 3 31 31 H 1.08994 * 109.47690 * 59.99576 * 1 2 3 32 32 H 1.09000 * 109.47237 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46666 * 304.99907 * 4 2 1 34 34 H 1.08996 * 109.47210 * 185.00216 * 4 2 1 35 35 H 0.97005 * 120.00302 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.46972 * 299.72402 * 8 7 5 37 37 H 1.09002 * 109.47069 * 59.72566 * 8 7 5 38 38 H 1.09004 * 109.32610 * 288.95198 * 11 9 8 39 39 H 1.09000 * 109.33453 * 48.60199 * 11 9 8 40 40 H 1.08995 * 108.51500 * 184.05444 * 12 11 9 41 41 H 1.09007 * 108.50750 * 301.70067 * 12 11 9 42 42 H 1.08996 * 109.49475 * 34.95890 * 13 12 11 43 43 H 1.09000 * 109.48790 * 155.02829 * 13 12 11 44 44 H 1.09003 * 109.36183 * 212.08057 * 14 13 12 45 45 H 1.08997 * 109.36970 * 331.69106 * 14 13 12 46 46 H 1.09007 * 108.94571 * 80.11820 * 15 14 13 47 47 H 1.09000 * 108.94620 * 198.74621 * 15 14 13 48 48 H 0.96996 * 120.00108 * 180.02562 * 20 19 17 49 49 H 1.07995 * 125.89000 * 359.95966 * 26 25 2 50 50 H 1.08003 * 126.28473 * 180.16386 * 27 26 25 51 51 H 1.08004 * 126.29032 * 179.73458 * 28 27 26 52 52 H 1.08004 * 125.89235 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6412 0.0572 -2.4766 6 8 1.0115 1.0875 -2.3631 7 7 1.9843 -0.3916 -3.7002 8 6 1.6019 0.3682 -4.8930 9 6 2.1162 -0.3504 -6.1420 10 1 3.2062 -0.3502 -6.1379 11 6 1.6052 0.3835 -7.4063 12 6 2.2972 -0.1185 -8.6032 13 6 2.0514 -1.5950 -8.8984 14 6 3.0207 -2.4326 -8.1012 15 6 2.3940 -2.8257 -6.7512 16 7 1.6355 -1.7139 -6.1452 17 6 0.4266 -1.9851 -5.5618 18 1 -0.3352 -1.2209 -5.5176 19 6 0.1805 -3.2423 -5.0272 20 7 1.1778 -4.0751 -4.8174 21 14 -1.5665 -3.7522 -4.6057 22 1 -2.4030 -3.7138 -5.8321 23 1 -1.5603 -5.1311 -4.0543 24 1 -2.1250 -2.8174 -3.5960 25 7 2.0183 -0.6907 1.1960 26 6 1.7559 -1.9869 1.5277 27 6 2.3800 -2.2588 2.6918 28 6 3.0442 -1.0848 3.0985 29 6 2.8055 -0.1418 2.1646 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6053 -1.7198 -1.2953 34 1 3.1262 -0.7994 -1.2057 35 1 2.4876 -1.2159 -3.7910 36 1 0.5159 0.4473 -4.9406 37 1 2.0372 1.3663 -4.8430 38 1 0.5334 0.2157 -7.5123 39 1 1.7947 1.4521 -7.3046 40 1 1.9694 0.4656 -9.4631 41 1 3.3688 0.0322 -8.4721 42 1 1.0305 -1.8565 -8.6201 43 1 2.1981 -1.7825 -9.9621 44 1 3.2656 -3.3344 -8.6624 45 1 3.9317 -1.8610 -7.9241 46 1 1.7219 -3.6700 -6.9055 47 1 3.1873 -3.1273 -6.0672 48 1 1.0058 -4.9537 -4.4442 49 1 1.1540 -2.6774 0.9556 50 1 2.3688 -3.2020 3.2179 51 1 3.6357 -0.9625 3.9938 52 1 3.1740 0.8733 2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725239754.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:00 Heat of formation + Delta-G solvation = 14.186171 kcal Electronic energy + Delta-G solvation = -30270.333728 eV Core-core repulsion = 26463.472820 eV Total energy + Delta-G solvation = -3806.860908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.16399 -40.76929 -39.61681 -36.32638 -35.71056 -35.18916 -33.29453 -32.46668 -30.84533 -29.65437 -29.39365 -28.22322 -27.02802 -25.20143 -24.15538 -23.19819 -21.58942 -21.33235 -20.91102 -20.79290 -20.27623 -18.59947 -18.22200 -17.37231 -17.18808 -16.68301 -16.50087 -16.08346 -15.88432 -15.56001 -15.21999 -15.14938 -14.91218 -14.60216 -14.48411 -14.25992 -13.88573 -13.69741 -13.59735 -13.38660 -13.22221 -13.11941 -12.96927 -12.92342 -12.82660 -12.75586 -12.63932 -12.40579 -12.35579 -12.12780 -12.00647 -11.53972 -11.40352 -11.32458 -11.20476 -11.04796 -10.73103 -10.34922 -9.77053 -9.51621 -9.03184 -8.54981 -7.78954 -5.22109 1.40373 1.41194 1.46514 1.48831 1.70073 1.91832 2.18901 2.51391 2.60352 3.36108 3.50573 3.60991 3.73766 3.91882 4.04328 4.09699 4.13049 4.21379 4.28281 4.41334 4.43238 4.46234 4.51312 4.51920 4.62045 4.66599 4.68661 4.73099 4.80872 4.85947 4.93490 5.01099 5.09027 5.13948 5.15411 5.26829 5.27152 5.38790 5.42692 5.43044 5.47382 5.55646 5.66544 5.70520 5.76379 5.80447 5.91408 6.14419 6.38533 6.47617 6.52364 6.74154 7.27226 7.36147 8.01441 8.39995 9.24326 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013269 B = 0.003497 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.656432 B = 8005.245392 C = 8856.272467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.160 3.840 3 H 0.110 0.890 4 C -0.140 4.140 5 C 0.515 3.485 6 O -0.584 6.584 7 N -0.689 5.689 8 C 0.134 3.866 9 C 0.173 3.827 10 H 0.056 0.944 11 C -0.129 4.129 12 C -0.101 4.101 13 C -0.103 4.103 14 C -0.133 4.133 15 C 0.190 3.810 16 N -0.588 5.588 17 C -0.232 4.232 18 H 0.049 0.951 19 C -0.023 4.023 20 N -0.918 5.918 21 Si 0.928 3.072 22 H -0.289 1.289 23 H -0.297 1.297 24 H -0.289 1.289 25 N -0.444 5.444 26 C -0.029 4.029 27 C -0.218 4.218 28 C -0.217 4.217 29 C -0.022 4.022 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.408 0.592 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.041 0.959 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.041 0.959 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.038 0.962 47 H 0.002 0.998 48 H 0.246 0.754 49 H 0.158 0.842 50 H 0.142 0.858 51 H 0.149 0.851 52 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.038 7.246 4.016 10.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.057 3.943 3 H 0.128 0.872 4 C -0.181 4.181 5 C 0.302 3.698 6 O -0.467 6.467 7 N -0.337 5.337 8 C 0.009 3.991 9 C 0.065 3.935 10 H 0.074 0.926 11 C -0.169 4.169 12 C -0.138 4.138 13 C -0.141 4.141 14 C -0.172 4.172 15 C 0.065 3.935 16 N -0.310 5.310 17 C -0.362 4.362 18 H 0.067 0.933 19 C -0.220 4.220 20 N -0.565 5.565 21 Si 0.759 3.241 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.216 1.216 25 N -0.119 5.119 26 C -0.158 4.158 27 C -0.242 4.242 28 C -0.242 4.242 29 C -0.152 4.152 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.243 0.757 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.057 0.943 47 H 0.021 0.979 48 H 0.055 0.945 49 H 0.176 0.824 50 H 0.160 0.840 51 H 0.167 0.833 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 5.503 7.967 3.814 10.407 hybrid contribution -1.173 -1.361 0.185 1.806 sum 4.330 6.606 3.999 8.853 Atomic orbital electron populations 1.22174 0.93495 1.02427 1.03587 1.20963 0.95448 0.96461 0.81402 0.87188 1.21866 1.04084 1.00399 0.91709 1.20432 0.79008 0.85187 0.85194 1.90602 1.42322 1.26446 1.87282 1.45745 1.55757 1.27119 1.05100 1.21446 0.99193 0.93805 0.84662 1.20672 0.96353 0.84618 0.91833 0.92633 1.21294 0.99958 0.99499 0.96176 1.20278 1.00506 0.95532 0.97483 1.20907 0.99259 0.95455 0.98498 1.21944 0.98451 0.99666 0.97107 1.20776 0.93316 0.89392 0.90033 1.43768 1.20401 1.02492 1.64357 1.18937 0.91232 0.96843 1.29231 0.93343 1.25218 0.97988 0.98952 0.99831 1.70098 1.29431 1.08287 1.48663 0.85972 0.83763 0.76728 0.77626 1.21600 1.22297 1.21599 1.44426 1.39129 1.10273 1.18101 1.21984 1.07002 0.86778 1.00080 1.21147 1.04785 1.00126 0.98155 1.21152 1.07297 0.93759 1.01958 1.22302 1.00969 1.00797 0.91135 0.91343 0.90447 0.92853 0.88863 0.87332 0.75650 0.93950 0.91453 0.93980 0.90852 0.92031 0.92041 0.93997 0.91952 0.92233 0.92213 0.94333 0.97944 0.94478 0.82434 0.83976 0.83286 0.80205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 8.97 71.98 0.65 -3.84 16 2 C 0.16 4.22 2.67 44.99 0.12 4.34 16 3 H 0.11 2.79 7.88 -2.39 -0.02 2.77 16 4 C -0.14 -4.02 5.17 29.85 0.15 -3.87 16 5 C 0.52 17.78 7.55 87.66 0.66 18.44 16 6 O -0.58 -22.45 13.97 -3.03 -0.04 -22.49 16 7 N -0.69 -24.67 4.71 -463.06 -2.18 -26.86 16 8 C 0.13 4.71 4.53 86.38 0.39 5.10 16 9 C 0.17 5.94 2.19 45.98 0.10 6.04 16 10 H 0.06 1.82 8.06 -2.39 -0.02 1.80 16 11 C -0.13 -3.87 5.06 29.39 0.15 -3.72 16 12 C -0.10 -2.71 5.16 28.61 0.15 -2.56 16 13 C -0.10 -3.18 5.51 29.76 0.16 -3.01 16 14 C -0.13 -4.33 5.71 30.23 0.17 -4.16 16 15 C 0.19 7.96 4.66 86.49 0.40 8.36 16 16 N -0.59 -24.42 1.77 -674.26 -1.20 -25.62 16 17 C -0.23 -11.09 7.64 84.03 0.64 -10.44 16 18 H 0.05 2.45 6.72 -2.91 -0.02 2.43 16 19 C -0.02 -1.18 4.89 84.86 0.41 -0.77 16 20 N -0.92 -47.83 11.03 21.65 0.24 -47.60 16 21 Si 0.93 43.13 29.58 68.60 2.03 45.16 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 25 N -0.44 -11.44 2.62 -502.01 -1.31 -12.75 16 26 C -0.03 -0.77 10.45 83.21 0.87 0.10 16 27 C -0.22 -5.54 10.86 22.14 0.24 -5.30 16 28 C -0.22 -5.13 10.86 22.14 0.24 -4.89 16 29 C -0.02 -0.52 11.39 83.21 0.95 0.42 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 2.53 5.95 -2.39 -0.01 2.51 16 32 H 0.05 1.53 7.91 -2.39 -0.02 1.51 16 33 H 0.09 2.89 8.06 -2.38 -0.02 2.87 16 34 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.41 15.44 8.07 -92.70 -0.75 14.69 16 36 H 0.04 1.72 6.83 -2.39 -0.02 1.70 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.87 8.11 -2.39 -0.02 1.85 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.52 7.35 -2.38 -0.02 1.50 16 42 H 0.04 1.56 7.48 -2.39 -0.02 1.54 16 43 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.06 1.77 7.31 -2.39 -0.02 1.75 16 46 H 0.04 1.89 6.40 -2.38 -0.02 1.87 16 47 H 0.00 0.11 8.02 -2.39 -0.02 0.09 16 48 H 0.25 12.90 8.31 -92.71 -0.77 12.13 16 49 H 0.16 4.07 8.06 -2.91 -0.02 4.04 16 50 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 51 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 52 H 0.18 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -55.92 399.95 4.14 -51.78 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: 0.14 Total: 38.12 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 6.46 Total: 0.25 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -4.45 Total: -112.82 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.04 Total: -22.49 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -55.92 4.14 -51.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725239754.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.967 kcal (2) G-P(sol) polarization free energy of solvation -55.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds