Wall clock time and date at job start Tue Mar 31 2020 17:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47019 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99704 * 2 1 3 5 5 C 1.50699 * 109.47258 * 295.00052 * 4 2 1 6 6 O 1.21282 * 120.00275 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00219 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00113 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47152 * 180.02562 * 8 7 5 10 10 H 1.09006 * 109.42868 * 294.93343 * 9 8 7 11 11 C 1.54861 * 109.44996 * 175.00168 * 9 8 7 12 12 C 1.47096 * 110.18186 * 168.60791 * 11 9 8 13 13 C 1.52573 * 114.32741 * 62.88412 * 12 11 9 14 14 C 1.50883 * 109.35526 * 274.98522 * 13 12 11 15 15 C 1.53943 * 110.09698 * 91.89073 * 14 13 12 16 16 N 1.44667 * 109.32960 * 54.99066 * 9 8 7 17 17 C 1.36936 * 118.80673 * 30.88617 * 16 9 8 18 18 H 1.08002 * 120.00260 * 27.72135 * 17 16 9 19 19 C 1.38817 * 119.99822 * 207.71673 * 17 16 9 20 20 N 1.31617 * 120.00005 * 14.66538 * 19 17 16 21 21 Si 1.86798 * 119.99984 * 194.66055 * 19 17 16 22 22 H 1.48499 * 109.47187 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47324 * 120.00295 * 21 19 17 24 24 H 1.48503 * 109.47031 * 240.00392 * 21 19 17 25 25 N 1.46493 * 109.47291 * 239.99909 * 2 1 3 26 26 C 1.36345 * 125.63481 * 299.69274 * 25 2 1 27 27 C 1.34851 * 108.21909 * 179.82941 * 26 25 2 28 28 C 1.40896 * 107.41603 * 0.42567 * 27 26 25 29 29 C 1.34846 * 107.41595 * 359.73705 * 28 27 26 30 30 H 1.08997 * 109.47061 * 59.99809 * 1 2 3 31 31 H 1.08996 * 109.47516 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47195 * 300.00581 * 1 2 3 33 33 H 1.08998 * 109.47355 * 174.99971 * 4 2 1 34 34 H 1.09004 * 109.46930 * 54.99761 * 4 2 1 35 35 H 0.97004 * 119.99903 * 0.02562 * 7 5 4 36 36 H 1.08998 * 109.47116 * 60.00439 * 8 7 5 37 37 H 1.09004 * 109.46905 * 300.00390 * 8 7 5 38 38 H 1.08996 * 109.33168 * 48.43500 * 11 9 8 39 39 H 1.08998 * 109.33101 * 288.77845 * 11 9 8 40 40 H 1.09006 * 108.51360 * 184.13661 * 12 11 9 41 41 H 1.08994 * 108.51341 * 301.78691 * 12 11 9 42 42 H 1.09007 * 109.49002 * 34.94431 * 13 12 11 43 43 H 1.09000 * 109.49375 * 155.01878 * 13 12 11 44 44 H 1.09003 * 109.36545 * 212.08232 * 14 13 12 45 45 H 1.08997 * 109.36428 * 331.70037 * 14 13 12 46 46 H 1.08997 * 108.95074 * 80.11339 * 15 14 13 47 47 H 1.08999 * 108.95206 * 198.75128 * 15 14 13 48 48 H 0.96996 * 120.00022 * 179.97438 * 20 19 17 49 49 H 1.08002 * 125.89142 * 359.96484 * 26 25 2 50 50 H 1.08001 * 126.29496 * 180.16359 * 27 26 25 51 51 H 1.07999 * 126.28885 * 179.73296 * 28 27 26 52 52 H 1.08006 * 125.88996 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0117 1.0875 2.3633 7 7 1.9844 -0.3917 3.7002 8 6 1.5964 0.3646 4.8933 9 6 2.1065 -0.3565 6.1426 10 1 1.6039 -1.3193 6.2362 11 6 1.8070 0.5053 7.3939 12 6 2.0383 -0.2784 8.6170 13 6 3.4819 -0.7335 8.8083 14 6 3.7046 -2.0208 8.0536 15 6 4.2204 -1.7197 6.6347 16 7 3.5337 -0.5631 6.0270 17 6 4.2778 0.3487 5.3269 18 1 3.9492 1.3752 5.2581 19 6 5.4546 -0.0465 4.7056 20 7 5.7125 -1.3262 4.5376 21 14 6.6721 1.2380 4.1080 22 1 6.1514 2.5943 4.4151 23 1 7.9750 1.0417 4.7930 24 1 6.8581 1.0991 2.6412 25 7 2.0183 -0.6906 -1.1961 26 6 1.7656 -1.9902 -1.5218 27 6 2.3799 -2.2587 -2.6919 28 6 3.0441 -1.0846 -3.0986 29 6 2.8055 -0.1417 -2.1646 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.1263 -0.7994 1.2056 34 1 1.6053 -1.7197 1.2952 35 1 2.4884 -1.2157 3.7909 36 1 0.5101 0.4427 4.9366 37 1 2.0310 1.3632 4.8477 38 1 0.7676 0.8325 7.3663 39 1 2.4600 1.3779 7.3958 40 1 1.7497 0.3275 9.4760 41 1 1.4003 -1.1617 8.5880 42 1 4.1581 0.0325 8.4283 43 1 3.6747 -0.8956 9.8688 44 1 4.4384 -2.6283 8.5836 45 1 2.7645 -2.5685 7.9878 46 1 5.2891 -1.5111 6.6834 47 1 4.0607 -2.5961 6.0066 48 1 6.5346 -1.6023 4.1031 49 1 1.1736 -2.6843 -0.9437 50 1 2.3687 -3.2018 -3.2181 51 1 3.6356 -0.9623 -3.9939 52 1 3.1747 0.8732 -2.1807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725239756.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:07 Heat of formation + Delta-G solvation = 24.553687 kcal Electronic energy + Delta-G solvation = -30218.378507 eV Core-core repulsion = 26411.967168 eV Total energy + Delta-G solvation = -3806.411339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.12417 -39.35744 -38.15270 -35.09377 -34.34702 -33.52887 -31.84942 -30.75737 -29.72430 -28.62677 -28.18797 -26.69862 -25.52106 -23.53222 -22.91267 -21.88649 -20.40013 -20.09809 -19.64284 -19.28076 -19.08402 -17.42674 -16.68464 -15.85615 -15.65397 -15.39802 -15.01310 -14.66699 -14.39946 -14.14821 -14.07233 -13.61724 -13.57856 -13.43065 -13.17887 -12.86407 -12.59489 -12.52019 -12.18741 -12.10620 -12.00726 -11.95726 -11.81241 -11.46136 -11.34278 -11.15580 -11.14356 -11.00494 -10.91453 -10.63260 -10.24509 -10.07852 -10.03951 -9.75807 -9.64253 -9.60122 -9.31536 -8.49011 -8.47757 -8.28611 -8.01817 -6.77129 -5.88714 -3.33292 2.43271 2.99515 3.12060 3.19498 3.29812 3.39913 3.41630 3.91379 4.41280 4.61836 4.91041 5.10442 5.14596 5.15386 5.28651 5.34761 5.37863 5.42370 5.45957 5.53650 5.57975 5.59761 5.70284 5.79269 5.83983 5.93317 5.96811 5.98037 6.02482 6.09576 6.22357 6.26403 6.33469 6.40191 6.46309 6.51249 6.56583 6.60381 6.65580 6.70501 6.79973 6.93689 7.05348 7.13599 7.17269 7.35905 7.39984 7.53936 7.61798 7.76077 8.19861 8.35947 8.79705 9.13786 9.78321 10.23670 11.17835 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.003535 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.857803 B = 7919.642700 C = 8938.998881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.105 0.895 4 C -0.150 4.150 5 C 0.517 3.483 6 O -0.565 6.565 7 N -0.686 5.686 8 C 0.129 3.871 9 C 0.173 3.827 10 H 0.045 0.955 11 C -0.136 4.136 12 C -0.101 4.101 13 C -0.107 4.107 14 C -0.143 4.143 15 C 0.180 3.820 16 N -0.584 5.584 17 C -0.248 4.248 18 H 0.063 0.937 19 C 0.011 3.989 20 N -0.902 5.902 21 Si 0.891 3.109 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.291 1.291 25 N -0.439 5.439 26 C -0.012 4.012 27 C -0.208 4.208 28 C -0.208 4.208 29 C -0.014 4.014 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.412 0.588 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.039 0.961 44 H 0.049 0.951 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.024 0.976 48 H 0.252 0.748 49 H 0.156 0.844 50 H 0.131 0.869 51 H 0.131 0.869 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.314 -1.984 -3.511 9.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.123 0.877 4 C -0.191 4.191 5 C 0.302 3.698 6 O -0.446 6.446 7 N -0.334 5.334 8 C 0.004 3.996 9 C 0.064 3.936 10 H 0.063 0.937 11 C -0.177 4.177 12 C -0.139 4.139 13 C -0.144 4.144 14 C -0.182 4.182 15 C 0.055 3.945 16 N -0.306 5.306 17 C -0.378 4.378 18 H 0.081 0.919 19 C -0.187 4.187 20 N -0.547 5.547 21 Si 0.721 3.279 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.218 1.218 25 N -0.115 5.115 26 C -0.142 4.142 27 C -0.232 4.232 28 C -0.232 4.232 29 C -0.144 4.144 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.248 0.752 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.042 0.958 48 H 0.063 0.937 49 H 0.173 0.827 50 H 0.148 0.852 51 H 0.149 0.851 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.736 -1.190 -3.320 9.421 hybrid contribution 1.239 0.186 -0.214 1.271 sum -7.497 -1.003 -3.535 8.349 Atomic orbital electron populations 1.22262 0.93036 1.02526 1.04204 1.21116 0.95750 0.96726 0.81682 0.87722 1.21947 1.04287 1.00366 0.92510 1.20029 0.79572 0.85490 0.84693 1.90612 1.42109 1.25000 1.86888 1.45676 1.55084 1.27839 1.04804 1.21495 0.96969 0.96583 0.84526 1.20530 0.86551 0.95414 0.91095 0.93748 1.21377 0.99715 0.99998 0.96622 1.20292 0.97023 0.99214 0.97324 1.20950 0.96905 0.98828 0.97741 1.22067 0.99958 0.96582 0.99592 1.21009 0.97228 0.88808 0.87434 1.43755 1.00148 1.27167 1.59536 1.19061 1.03613 0.90097 1.25023 0.91918 1.24918 1.00007 0.95476 0.98325 1.70025 1.25594 1.13224 1.45809 0.86402 0.81744 0.81572 0.78173 1.20404 1.21634 1.21823 1.44411 1.38906 1.10078 1.18063 1.21710 1.06838 0.86255 0.99426 1.20835 1.05124 0.99198 0.98070 1.20832 1.07037 0.94066 1.01304 1.21852 1.01119 0.99845 0.91577 0.92363 0.92580 0.88494 0.87908 0.88807 0.75157 0.93194 0.91369 0.93313 0.91799 0.94078 0.93540 0.90793 0.94186 0.93259 0.93843 0.90738 0.95831 0.93732 0.82672 0.85158 0.85148 0.82535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 8.98 37.16 0.33 -1.70 16 2 C 0.15 2.04 2.67 -67.94 -0.18 1.86 16 3 H 0.10 1.52 7.88 -51.93 -0.41 1.11 16 4 C -0.15 -2.19 5.16 -27.88 -0.14 -2.34 16 5 C 0.52 8.95 7.55 -10.98 -0.08 8.87 16 6 O -0.56 -10.88 13.97 5.56 0.08 -10.80 16 7 N -0.69 -12.30 4.72 -60.29 -0.28 -12.59 16 8 C 0.13 2.31 4.53 -4.04 -0.02 2.30 16 9 C 0.17 3.08 2.19 -67.93 -0.15 2.93 16 10 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 11 C -0.14 -2.20 5.07 -28.58 -0.14 -2.34 16 12 C -0.10 -1.53 5.16 -29.78 -0.15 -1.68 16 13 C -0.11 -1.75 5.51 -28.01 -0.15 -1.91 16 14 C -0.14 -2.46 5.70 -27.30 -0.16 -2.62 16 15 C 0.18 3.77 4.66 -2.95 -0.01 3.76 16 16 N -0.58 -12.17 1.77 -164.41 -0.29 -12.46 16 17 C -0.25 -5.89 7.66 -15.06 -0.12 -6.00 16 18 H 0.06 1.57 6.73 -52.49 -0.35 1.21 16 19 C 0.01 0.28 4.89 -17.43 -0.09 0.20 16 20 N -0.90 -23.16 11.03 55.49 0.61 -22.55 16 21 Si 0.89 20.83 29.58 -169.99 -5.03 15.80 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 N -0.44 -6.00 2.62 -110.03 -0.29 -6.28 16 26 C -0.01 -0.16 10.45 -16.75 -0.18 -0.33 16 27 C -0.21 -2.73 10.86 -39.78 -0.43 -3.16 16 28 C -0.21 -2.77 10.86 -39.78 -0.43 -3.20 16 29 C -0.01 -0.19 11.39 -16.75 -0.19 -0.38 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.63 7.92 -51.93 -0.41 0.22 16 32 H 0.10 1.36 5.95 -51.93 -0.31 1.05 16 33 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 35 H 0.41 7.78 8.08 -40.82 -0.33 7.45 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.38 6.83 -51.93 -0.35 1.03 16 38 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.67 7.34 -51.93 -0.38 0.29 16 42 H 0.07 1.41 7.48 -51.92 -0.39 1.02 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16 46 H 0.07 1.80 6.39 -51.93 -0.33 1.46 16 47 H 0.02 0.53 8.02 -51.93 -0.42 0.12 16 48 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 49 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 50 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 51 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 52 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -26.28 399.97 -10.58 -36.86 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -9.11 Total: 11.74 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.29 Total: -5.74 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.25 Total: -53.88 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -26.28 -10.58 -36.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725239756.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.413 kcal (2) G-P(sol) polarization free energy of solvation -26.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds