Wall clock time and date at job start Tue Mar 31 2020 17:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47019 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99704 * 2 1 3 5 5 C 1.50699 * 109.47258 * 295.00052 * 4 2 1 6 6 O 1.21282 * 120.00275 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00219 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00113 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47152 * 180.02562 * 8 7 5 10 10 H 1.09006 * 109.42868 * 294.93343 * 9 8 7 11 11 C 1.54861 * 109.44996 * 175.00168 * 9 8 7 12 12 C 1.47096 * 110.18186 * 168.60791 * 11 9 8 13 13 C 1.52573 * 114.32741 * 62.88412 * 12 11 9 14 14 C 1.50883 * 109.35526 * 274.98522 * 13 12 11 15 15 C 1.53943 * 110.09698 * 91.89073 * 14 13 12 16 16 N 1.44667 * 109.32960 * 54.99066 * 9 8 7 17 17 C 1.36936 * 118.80673 * 30.88617 * 16 9 8 18 18 H 1.08002 * 120.00260 * 27.72135 * 17 16 9 19 19 C 1.38817 * 119.99822 * 207.71673 * 17 16 9 20 20 N 1.31617 * 120.00005 * 14.66538 * 19 17 16 21 21 Si 1.86798 * 119.99984 * 194.66055 * 19 17 16 22 22 H 1.48499 * 109.47187 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47324 * 120.00295 * 21 19 17 24 24 H 1.48503 * 109.47031 * 240.00392 * 21 19 17 25 25 N 1.46493 * 109.47291 * 239.99909 * 2 1 3 26 26 C 1.36345 * 125.63481 * 299.69274 * 25 2 1 27 27 C 1.34851 * 108.21909 * 179.82941 * 26 25 2 28 28 C 1.40896 * 107.41603 * 0.42567 * 27 26 25 29 29 C 1.34846 * 107.41595 * 359.73705 * 28 27 26 30 30 H 1.08997 * 109.47061 * 59.99809 * 1 2 3 31 31 H 1.08996 * 109.47516 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47195 * 300.00581 * 1 2 3 33 33 H 1.08998 * 109.47355 * 174.99971 * 4 2 1 34 34 H 1.09004 * 109.46930 * 54.99761 * 4 2 1 35 35 H 0.97004 * 119.99903 * 0.02562 * 7 5 4 36 36 H 1.08998 * 109.47116 * 60.00439 * 8 7 5 37 37 H 1.09004 * 109.46905 * 300.00390 * 8 7 5 38 38 H 1.08996 * 109.33168 * 48.43500 * 11 9 8 39 39 H 1.08998 * 109.33101 * 288.77845 * 11 9 8 40 40 H 1.09006 * 108.51360 * 184.13661 * 12 11 9 41 41 H 1.08994 * 108.51341 * 301.78691 * 12 11 9 42 42 H 1.09007 * 109.49002 * 34.94431 * 13 12 11 43 43 H 1.09000 * 109.49375 * 155.01878 * 13 12 11 44 44 H 1.09003 * 109.36545 * 212.08232 * 14 13 12 45 45 H 1.08997 * 109.36428 * 331.70037 * 14 13 12 46 46 H 1.08997 * 108.95074 * 80.11339 * 15 14 13 47 47 H 1.08999 * 108.95206 * 198.75128 * 15 14 13 48 48 H 0.96996 * 120.00022 * 179.97438 * 20 19 17 49 49 H 1.08002 * 125.89142 * 359.96484 * 26 25 2 50 50 H 1.08001 * 126.29496 * 180.16359 * 27 26 25 51 51 H 1.07999 * 126.28885 * 179.73296 * 28 27 26 52 52 H 1.08006 * 125.88996 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0117 1.0875 2.3633 7 7 1.9844 -0.3917 3.7002 8 6 1.5964 0.3646 4.8933 9 6 2.1065 -0.3565 6.1426 10 1 1.6039 -1.3193 6.2362 11 6 1.8070 0.5053 7.3939 12 6 2.0383 -0.2784 8.6170 13 6 3.4819 -0.7335 8.8083 14 6 3.7046 -2.0208 8.0536 15 6 4.2204 -1.7197 6.6347 16 7 3.5337 -0.5631 6.0270 17 6 4.2778 0.3487 5.3269 18 1 3.9492 1.3752 5.2581 19 6 5.4546 -0.0465 4.7056 20 7 5.7125 -1.3262 4.5376 21 14 6.6721 1.2380 4.1080 22 1 6.1514 2.5943 4.4151 23 1 7.9750 1.0417 4.7930 24 1 6.8581 1.0991 2.6412 25 7 2.0183 -0.6906 -1.1961 26 6 1.7656 -1.9902 -1.5218 27 6 2.3799 -2.2587 -2.6919 28 6 3.0441 -1.0846 -3.0986 29 6 2.8055 -0.1417 -2.1646 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.1263 -0.7994 1.2056 34 1 1.6053 -1.7197 1.2952 35 1 2.4884 -1.2157 3.7909 36 1 0.5101 0.4427 4.9366 37 1 2.0310 1.3632 4.8477 38 1 0.7676 0.8325 7.3663 39 1 2.4600 1.3779 7.3958 40 1 1.7497 0.3275 9.4760 41 1 1.4003 -1.1617 8.5880 42 1 4.1581 0.0325 8.4283 43 1 3.6747 -0.8956 9.8688 44 1 4.4384 -2.6283 8.5836 45 1 2.7645 -2.5685 7.9878 46 1 5.2891 -1.5111 6.6834 47 1 4.0607 -2.5961 6.0066 48 1 6.5346 -1.6023 4.1031 49 1 1.1736 -2.6843 -0.9437 50 1 2.3687 -3.2018 -3.2181 51 1 3.6356 -0.9623 -3.9939 52 1 3.1747 0.8732 -2.1807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725239756.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:06 Heat of formation + Delta-G solvation = 13.698191 kcal Electronic energy + Delta-G solvation = -30218.849237 eV Core-core repulsion = 26411.967168 eV Total energy + Delta-G solvation = -3806.882068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.16228 -40.76911 -39.61790 -36.32174 -35.70792 -35.19735 -33.29065 -32.47092 -30.84303 -29.65139 -29.38079 -28.21469 -27.02514 -25.20528 -24.14098 -23.19506 -21.59361 -21.35114 -20.92287 -20.79403 -20.27011 -18.60053 -18.22581 -17.39500 -17.14035 -16.79491 -16.43386 -16.08041 -15.86081 -15.49505 -15.33805 -15.21601 -14.77846 -14.67313 -14.49195 -14.17829 -13.89692 -13.73217 -13.56755 -13.38538 -13.20774 -13.12203 -12.95926 -12.92555 -12.85511 -12.81125 -12.60327 -12.36541 -12.34224 -12.11287 -12.01215 -11.53942 -11.40444 -11.32352 -11.20213 -11.04917 -10.73059 -10.36715 -9.76959 -9.51337 -9.03370 -8.56061 -7.80745 -5.23394 1.37259 1.40174 1.45382 1.48965 1.71648 1.90879 2.18536 2.49923 2.60611 3.34569 3.49026 3.60703 3.77811 3.91763 4.04490 4.09829 4.13052 4.22684 4.28601 4.40404 4.42737 4.45243 4.51918 4.54268 4.62138 4.68045 4.69266 4.76055 4.82248 4.88235 4.94867 5.01280 5.09204 5.14120 5.19881 5.27037 5.27386 5.38947 5.42203 5.43351 5.46281 5.55894 5.66694 5.70319 5.76612 5.80087 5.91401 6.13863 6.38512 6.46262 6.52224 6.74115 7.25796 7.36235 8.00313 8.38807 9.22572 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.003535 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.857803 B = 7919.642700 C = 8938.998881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.091 0.909 4 C -0.139 4.139 5 C 0.516 3.484 6 O -0.584 6.584 7 N -0.689 5.689 8 C 0.133 3.867 9 C 0.172 3.828 10 H 0.058 0.942 11 C -0.129 4.129 12 C -0.100 4.100 13 C -0.104 4.104 14 C -0.133 4.133 15 C 0.189 3.811 16 N -0.588 5.588 17 C -0.227 4.227 18 H 0.049 0.951 19 C -0.026 4.026 20 N -0.918 5.918 21 Si 0.927 3.073 22 H -0.281 1.281 23 H -0.295 1.295 24 H -0.300 1.300 25 N -0.444 5.444 26 C -0.019 4.019 27 C -0.221 4.221 28 C -0.218 4.218 29 C -0.034 4.034 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.408 0.592 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.037 0.963 47 H 0.003 0.997 48 H 0.245 0.755 49 H 0.177 0.823 50 H 0.147 0.853 51 H 0.145 0.855 52 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.183 -2.816 -2.728 10.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.052 3.948 3 H 0.109 0.891 4 C -0.180 4.180 5 C 0.302 3.698 6 O -0.467 6.467 7 N -0.337 5.337 8 C 0.008 3.992 9 C 0.065 3.935 10 H 0.076 0.924 11 C -0.169 4.169 12 C -0.138 4.138 13 C -0.141 4.141 14 C -0.171 4.171 15 C 0.064 3.936 16 N -0.311 5.311 17 C -0.358 4.358 18 H 0.067 0.933 19 C -0.223 4.223 20 N -0.565 5.565 21 Si 0.758 3.242 22 H -0.207 1.207 23 H -0.222 1.222 24 H -0.228 1.228 25 N -0.120 5.120 26 C -0.149 4.149 27 C -0.245 4.245 28 C -0.242 4.242 29 C -0.164 4.164 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.135 0.865 35 H 0.244 0.756 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.056 0.944 47 H 0.021 0.979 48 H 0.054 0.946 49 H 0.194 0.806 50 H 0.165 0.835 51 H 0.162 0.838 52 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.624 -2.009 -2.526 11.103 hybrid contribution 1.792 0.474 -0.452 1.908 sum -8.832 -1.535 -2.978 9.446 Atomic orbital electron populations 1.22148 0.91880 1.03351 1.03650 1.20996 0.96510 0.95868 0.81388 0.89108 1.21862 1.03211 1.01238 0.91666 1.20432 0.78931 0.85298 0.85144 1.90604 1.43003 1.25876 1.87183 1.45747 1.55102 1.27651 1.05210 1.21455 0.97846 0.95139 0.84718 1.20708 0.84534 0.96399 0.91877 0.92405 1.21295 1.00707 0.98862 0.96063 1.20278 0.96158 0.99994 0.97358 1.20913 0.97285 0.97223 0.98725 1.21940 1.00841 0.97459 0.96896 1.20777 0.95424 0.87788 0.89568 1.43807 1.01467 1.26486 1.59304 1.18986 1.03325 0.89924 1.23578 0.93346 1.25228 1.01229 0.96146 0.99650 1.70109 1.25455 1.13756 1.47141 0.85834 0.80673 0.80501 0.77151 1.20652 1.22219 1.22781 1.44439 1.39163 1.10454 1.17928 1.22142 1.06872 0.86195 0.99703 1.21170 1.05073 0.99877 0.98391 1.21150 1.07100 0.94190 1.01784 1.22201 1.01585 1.00718 0.91922 0.91835 0.91046 0.89993 0.89600 0.86538 0.75650 0.91302 0.94104 0.90782 0.94058 0.92045 0.91961 0.94025 0.91939 0.92249 0.92120 0.94426 0.97901 0.94564 0.80593 0.83498 0.83764 0.81507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 8.98 71.98 0.65 -2.97 16 2 C 0.15 4.13 2.67 44.99 0.12 4.25 16 3 H 0.09 2.66 7.88 -2.38 -0.02 2.64 16 4 C -0.14 -3.99 5.16 29.85 0.15 -3.83 16 5 C 0.52 17.70 7.55 87.66 0.66 18.36 16 6 O -0.58 -22.41 13.97 -3.04 -0.04 -22.45 16 7 N -0.69 -24.51 4.72 -463.06 -2.19 -26.69 16 8 C 0.13 4.67 4.53 86.38 0.39 5.06 16 9 C 0.17 5.89 2.19 45.97 0.10 5.99 16 10 H 0.06 1.87 8.05 -2.38 -0.02 1.85 16 11 C -0.13 -3.85 5.07 29.39 0.15 -3.71 16 12 C -0.10 -2.69 5.16 28.62 0.15 -2.54 16 13 C -0.10 -3.17 5.51 29.76 0.16 -3.01 16 14 C -0.13 -4.30 5.70 30.22 0.17 -4.13 16 15 C 0.19 7.94 4.66 86.49 0.40 8.34 16 16 N -0.59 -24.46 1.77 -674.06 -1.19 -25.65 16 17 C -0.23 -10.95 7.66 84.03 0.64 -10.31 16 18 H 0.05 2.48 6.73 -2.91 -0.02 2.46 16 19 C -0.03 -1.34 4.89 84.86 0.41 -0.92 16 20 N -0.92 -48.35 11.03 21.65 0.24 -48.11 16 21 Si 0.93 43.80 29.58 68.60 2.03 45.83 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 23 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 24 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 25 N -0.44 -11.71 2.62 -502.01 -1.31 -13.02 16 26 C -0.02 -0.47 10.45 83.21 0.87 0.40 16 27 C -0.22 -5.47 10.86 22.14 0.24 -5.23 16 28 C -0.22 -5.58 10.86 22.14 0.24 -5.34 16 29 C -0.03 -0.92 11.39 83.21 0.95 0.03 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.45 7.92 -2.39 -0.02 1.44 16 32 H 0.08 2.23 5.95 -2.38 -0.01 2.21 16 33 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.12 2.78 8.05 -2.38 -0.02 2.76 16 35 H 0.41 15.32 8.08 -92.71 -0.75 14.57 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.04 1.66 6.83 -2.38 -0.02 1.64 16 38 H 0.07 1.87 8.11 -2.39 -0.02 1.85 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.06 1.52 7.34 -2.39 -0.02 1.50 16 42 H 0.04 1.54 7.48 -2.38 -0.02 1.53 16 43 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 1.78 7.31 -2.39 -0.02 1.76 16 46 H 0.04 1.85 6.39 -2.39 -0.02 1.83 16 47 H 0.00 0.13 8.02 -2.39 -0.02 0.11 16 48 H 0.24 12.96 8.31 -92.71 -0.77 12.19 16 49 H 0.18 3.39 8.06 -2.91 -0.02 3.37 16 50 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 51 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 52 H 0.17 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -57.27 399.97 4.14 -53.13 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: 0.14 Total: 36.51 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 6.47 Total: 0.45 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -4.45 Total: -113.48 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.04 Total: -22.45 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -57.27 4.14 -53.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725239756.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.831 kcal (2) G-P(sol) polarization free energy of solvation -57.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds