Wall clock time and date at job start Tue Mar 31 2020 17:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46986 * 2 1 4 4 C 1.52997 * 109.47200 * 240.00257 * 2 1 3 5 5 C 1.50704 * 109.46997 * 64.99911 * 4 2 1 6 6 O 1.21276 * 120.00013 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00077 * 180.02562 * 5 4 2 8 8 C 1.46497 * 120.00026 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47130 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.44592 * 64.99936 * 9 8 7 11 11 C 1.54870 * 109.45054 * 184.94664 * 9 8 7 12 12 C 1.47097 * 110.31291 * 191.32123 * 11 9 8 13 13 C 1.52566 * 114.30920 * 297.14969 * 12 11 9 14 14 C 1.50877 * 109.35226 * 85.04473 * 13 12 11 15 15 C 1.53942 * 110.09214 * 268.11397 * 14 13 12 16 16 N 1.44579 * 109.45058 * 305.05467 * 9 8 7 17 17 C 1.36941 * 118.63952 * 329.26419 * 16 9 8 18 18 H 1.08003 * 119.99833 * 331.67087 * 17 16 9 19 19 C 1.38815 * 120.00009 * 151.67321 * 17 16 9 20 20 N 1.31617 * 120.00026 * 344.49928 * 19 17 16 21 21 Si 1.86799 * 119.99909 * 164.49967 * 19 17 16 22 22 H 1.48506 * 109.47301 * 60.00007 * 21 19 17 23 23 H 1.48504 * 109.47117 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47265 * 299.99674 * 21 19 17 25 25 N 1.46497 * 109.47183 * 120.00222 * 2 1 3 26 26 C 1.36342 * 125.63511 * 59.69198 * 25 2 1 27 27 C 1.34858 * 108.21639 * 179.82781 * 26 25 2 28 28 C 1.40883 * 107.41489 * 0.42837 * 27 26 25 29 29 C 1.34850 * 107.42284 * 359.73221 * 28 27 26 30 30 H 1.09003 * 109.46801 * 299.99911 * 1 2 3 31 31 H 1.09004 * 109.47337 * 59.99021 * 1 2 3 32 32 H 1.08994 * 109.47400 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47137 * 305.00164 * 4 2 1 34 34 H 1.09000 * 109.47513 * 184.99943 * 4 2 1 35 35 H 0.97001 * 120.00085 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.47080 * 59.99677 * 8 7 5 37 37 H 1.09002 * 109.47333 * 299.99457 * 8 7 5 38 38 H 1.08996 * 109.32636 * 311.55718 * 11 9 8 39 39 H 1.09003 * 109.32840 * 71.03291 * 11 9 8 40 40 H 1.09001 * 108.51053 * 175.90892 * 12 11 9 41 41 H 1.09000 * 108.41235 * 58.31896 * 12 11 9 42 42 H 1.08996 * 109.49383 * 325.07869 * 13 12 11 43 43 H 1.09009 * 109.49306 * 205.00643 * 13 12 11 44 44 H 1.08994 * 109.36911 * 147.91854 * 14 13 12 45 45 H 1.09000 * 109.26424 * 28.23450 * 14 13 12 46 46 H 1.09002 * 108.94706 * 279.87223 * 15 14 13 47 47 H 1.09003 * 108.87745 * 161.19616 * 15 14 13 48 48 H 0.96993 * 120.00473 * 180.02562 * 20 19 17 49 49 H 1.07999 * 125.88902 * 359.96381 * 26 25 2 50 50 H 1.08003 * 126.28846 * 180.15900 * 27 26 25 51 51 H 1.08006 * 126.28988 * 179.73493 * 28 27 26 52 52 H 1.07995 * 125.89368 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0117 1.0875 -2.3632 7 7 1.9844 -0.3917 -3.7002 8 6 1.5973 0.3653 -4.8932 9 6 2.1072 -0.3560 -6.1426 10 1 1.6049 -1.3188 -6.2361 11 6 1.8075 0.5058 -7.3940 12 6 2.0393 -0.2748 -8.6190 13 6 3.4832 -0.7286 -8.8108 14 6 3.7061 -2.0179 -8.0596 15 6 4.2207 -1.7205 -6.6396 16 7 3.5331 -0.5659 -6.0290 17 6 4.2765 0.3439 -5.3256 18 1 3.9526 1.3723 -5.2621 19 6 5.4464 -0.0555 -4.6940 20 7 5.6886 -1.3354 -4.5058 21 14 6.6769 1.2235 -4.1114 22 1 6.0262 2.1234 -3.1254 23 1 7.8327 0.5438 -3.4731 24 1 7.1498 2.0202 -5.2720 25 7 2.0183 -0.6906 1.1961 26 6 1.7559 -1.9868 1.5278 27 6 2.3800 -2.2588 2.6919 28 6 3.0441 -1.0847 3.0986 29 6 2.8055 -0.1417 2.1646 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6053 -1.7197 -1.2952 34 1 3.1263 -0.7994 -1.2056 35 1 2.4883 -1.2155 -3.7909 36 1 2.0326 1.3635 -4.8473 37 1 0.5110 0.4443 -4.9369 38 1 0.7682 0.8329 -7.3662 39 1 2.4583 1.3802 -7.3942 40 1 1.7508 0.3332 -9.4765 41 1 1.4000 -1.1572 -8.5911 42 1 4.1588 0.0366 -8.4283 43 1 3.6767 -0.8876 -9.8717 44 1 4.4403 -2.6235 -8.5908 45 1 2.7650 -2.5643 -7.9959 46 1 5.2894 -1.5115 -6.6870 47 1 4.0596 -2.5991 -6.0148 48 1 6.5058 -1.6146 -4.0642 49 1 1.1540 -2.6773 0.9556 50 1 2.3688 -3.2019 3.2181 51 1 3.6357 -0.9624 3.9939 52 1 3.1746 0.8731 2.1807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725239758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:10 Heat of formation + Delta-G solvation = 13.422971 kcal Electronic energy + Delta-G solvation = -30221.323995 eV Core-core repulsion = 26414.429992 eV Total energy + Delta-G solvation = -3806.894003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.16133 -40.76786 -39.61719 -36.32221 -35.70866 -35.18714 -33.29245 -32.48038 -30.84212 -29.65255 -29.37597 -28.20897 -27.02326 -25.20969 -24.14265 -23.19568 -21.58959 -21.34857 -20.91881 -20.79576 -20.26988 -18.59912 -18.22120 -17.38765 -17.13400 -16.79339 -16.43477 -16.08225 -15.87262 -15.48975 -15.33843 -15.21404 -14.77709 -14.67032 -14.49097 -14.18071 -13.89773 -13.73314 -13.56744 -13.38582 -13.21131 -13.12012 -12.96167 -12.92421 -12.84190 -12.77272 -12.60289 -12.41443 -12.34273 -12.11303 -12.02625 -11.54482 -11.40159 -11.31734 -11.20355 -11.05133 -10.73039 -10.36308 -9.76585 -9.51219 -9.03170 -8.55077 -7.80674 -5.23590 1.39667 1.40442 1.45102 1.47187 1.71875 1.90856 2.18730 2.50487 2.61103 3.34308 3.49154 3.60698 3.77802 3.92062 4.04525 4.09972 4.13052 4.22816 4.28575 4.40617 4.42781 4.45315 4.51868 4.54383 4.62129 4.67972 4.69261 4.76183 4.82158 4.88188 4.94866 5.01280 5.09064 5.13974 5.19844 5.26855 5.27125 5.38964 5.42364 5.43183 5.46500 5.55899 5.66309 5.70320 5.76414 5.80088 5.89822 6.14049 6.38740 6.46511 6.52314 6.74553 7.26103 7.36603 8.00660 8.39118 9.22371 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.003535 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.879307 B = 7919.281244 C = 8939.375288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.090 0.910 4 C -0.139 4.139 5 C 0.515 3.485 6 O -0.585 6.585 7 N -0.689 5.689 8 C 0.134 3.866 9 C 0.173 3.827 10 H 0.057 0.943 11 C -0.129 4.129 12 C -0.100 4.100 13 C -0.104 4.104 14 C -0.133 4.133 15 C 0.190 3.810 16 N -0.588 5.588 17 C -0.231 4.231 18 H 0.048 0.952 19 C -0.024 4.024 20 N -0.917 5.917 21 Si 0.927 3.073 22 H -0.291 1.291 23 H -0.297 1.297 24 H -0.287 1.287 25 N -0.444 5.444 26 C -0.019 4.019 27 C -0.221 4.221 28 C -0.217 4.217 29 C -0.035 4.035 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.408 0.592 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.035 0.965 47 H 0.003 0.997 48 H 0.245 0.755 49 H 0.177 0.823 50 H 0.147 0.853 51 H 0.145 0.855 52 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.063 -2.864 2.704 10.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.052 3.948 3 H 0.108 0.892 4 C -0.179 4.179 5 C 0.302 3.698 6 O -0.467 6.467 7 N -0.337 5.337 8 C 0.009 3.991 9 C 0.065 3.935 10 H 0.075 0.925 11 C -0.169 4.169 12 C -0.138 4.138 13 C -0.142 4.142 14 C -0.171 4.171 15 C 0.065 3.935 16 N -0.310 5.310 17 C -0.362 4.362 18 H 0.065 0.935 19 C -0.221 4.221 20 N -0.563 5.563 21 Si 0.758 3.242 22 H -0.218 1.218 23 H -0.224 1.224 24 H -0.214 1.214 25 N -0.120 5.120 26 C -0.149 4.149 27 C -0.245 4.245 28 C -0.242 4.242 29 C -0.164 4.164 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.244 0.756 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.054 0.946 47 H 0.021 0.979 48 H 0.055 0.945 49 H 0.194 0.806 50 H 0.165 0.835 51 H 0.162 0.838 52 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.492 -2.076 2.509 10.985 hybrid contribution 1.775 0.514 0.438 1.899 sum -8.717 -1.562 2.947 9.333 Atomic orbital electron populations 1.22151 0.91885 1.03363 1.03647 1.20992 0.96510 0.95841 0.81412 0.89162 1.21858 1.03228 1.01215 0.91641 1.20438 0.78931 0.85296 0.85165 1.90601 1.43038 1.25899 1.87188 1.45743 1.55095 1.27634 1.05202 1.21447 0.97823 0.95124 0.84717 1.20681 0.84571 0.96349 0.91856 0.92493 1.21297 1.00706 0.98872 0.96073 1.20275 0.96150 1.00021 0.97330 1.20910 0.97268 0.97224 0.98749 1.21941 1.00863 0.97469 0.96866 1.20762 0.95254 0.87861 0.89600 1.43766 1.01477 1.26716 1.59042 1.18905 1.03930 0.89821 1.23562 0.93459 1.25229 1.01276 0.96140 0.99409 1.70090 1.25958 1.13805 1.46412 0.85988 0.80262 0.80070 0.77854 1.21822 1.22374 1.21384 1.44436 1.39018 1.10661 1.17859 1.22142 1.06656 0.86322 0.99788 1.21168 1.04903 0.99861 0.98568 1.21147 1.07161 0.94128 1.01763 1.22199 1.01741 1.00683 0.91811 0.91828 0.90012 0.91020 0.86547 0.89575 0.75624 0.94127 0.91319 0.90823 0.94080 0.92042 0.91957 0.94043 0.91928 0.92182 0.92098 0.94604 0.97851 0.94514 0.80597 0.83496 0.83757 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.97 71.98 0.65 -2.99 16 2 C 0.16 4.15 2.67 44.99 0.12 4.27 16 3 H 0.09 2.67 7.88 -2.38 -0.02 2.65 16 4 C -0.14 -4.00 5.17 29.85 0.15 -3.84 16 5 C 0.52 17.83 7.55 87.66 0.66 18.49 16 6 O -0.58 -22.60 13.97 -3.02 -0.04 -22.64 16 7 N -0.69 -24.65 4.72 -463.05 -2.18 -26.84 16 8 C 0.13 4.71 4.53 86.38 0.39 5.10 16 9 C 0.17 5.93 2.19 45.99 0.10 6.03 16 10 H 0.06 1.85 8.06 -2.39 -0.02 1.83 16 11 C -0.13 -3.87 5.06 29.40 0.15 -3.72 16 12 C -0.10 -2.69 5.16 28.61 0.15 -2.54 16 13 C -0.10 -3.17 5.51 29.76 0.16 -3.01 16 14 C -0.13 -4.29 5.71 30.22 0.17 -4.12 16 15 C 0.19 7.96 4.66 86.49 0.40 8.36 16 16 N -0.59 -24.46 1.77 -674.22 -1.19 -25.66 16 17 C -0.23 -11.16 7.62 84.03 0.64 -10.52 16 18 H 0.05 2.42 6.75 -2.91 -0.02 2.40 16 19 C -0.02 -1.22 4.86 84.86 0.41 -0.81 16 20 N -0.92 -48.17 11.13 21.65 0.24 -47.93 16 21 Si 0.93 43.76 29.58 68.60 2.03 45.79 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 25 N -0.44 -11.72 2.62 -502.01 -1.31 -13.03 16 26 C -0.02 -0.47 10.45 83.22 0.87 0.40 16 27 C -0.22 -5.46 10.86 22.14 0.24 -5.22 16 28 C -0.22 -5.57 10.86 22.14 0.24 -5.33 16 29 C -0.03 -0.92 11.39 83.21 0.95 0.03 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 2.23 5.95 -2.39 -0.01 2.22 16 32 H 0.07 1.46 7.91 -2.39 -0.02 1.44 16 33 H 0.12 2.79 8.06 -2.39 -0.02 2.78 16 34 H 0.09 2.81 8.14 -2.39 -0.02 2.80 16 35 H 0.41 15.43 8.08 -92.71 -0.75 14.68 16 36 H 0.04 1.66 6.84 -2.39 -0.02 1.64 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.52 7.35 -2.39 -0.02 1.50 16 42 H 0.04 1.54 7.48 -2.39 -0.02 1.52 16 43 H 0.06 1.64 8.14 -2.38 -0.02 1.63 16 44 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.06 1.79 7.31 -2.39 -0.02 1.77 16 46 H 0.04 1.75 6.47 -2.39 -0.02 1.74 16 47 H 0.00 0.15 8.02 -2.39 -0.02 0.14 16 48 H 0.25 13.03 8.31 -92.71 -0.77 12.26 16 49 H 0.18 3.39 8.06 -2.91 -0.02 3.36 16 50 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 51 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 52 H 0.17 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -57.17 400.11 4.14 -53.04 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: 0.14 Total: 36.69 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 6.46 Total: 0.59 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -4.45 Total: -113.46 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.04 Total: -22.64 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -57.17 4.14 -53.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725239758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.459 kcal (2) G-P(sol) polarization free energy of solvation -57.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds