Wall clock time and date at job start Tue Mar 31 2020 17:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46824 * 2 1 4 4 C 1.52999 * 109.46911 * 240.00487 * 2 1 3 5 5 C 1.53004 * 109.47110 * 174.99784 * 4 2 1 6 6 C 1.52995 * 109.47261 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.47280 * 179.97438 * 6 5 4 8 8 C 1.36935 * 120.00237 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00057 * 359.97438 * 8 7 6 10 10 C 1.38807 * 120.00087 * 179.97438 * 8 7 6 11 11 N 1.31624 * 120.00078 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00164 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47430 * 89.99991 * 12 10 8 14 14 H 1.48503 * 109.47228 * 210.00284 * 12 10 8 15 15 H 1.48500 * 109.46796 * 329.99695 * 12 10 8 16 16 N 1.46497 * 109.47361 * 120.00109 * 2 1 3 17 17 C 1.34777 * 120.00062 * 275.00218 * 16 2 1 18 18 O 1.21551 * 119.99742 * 359.97438 * 17 16 2 19 19 C 1.47847 * 119.99732 * 180.02562 * 17 16 2 20 20 C 1.39594 * 120.14739 * 359.97438 * 19 17 16 21 21 C 1.37933 * 119.85449 * 180.02562 * 20 19 17 22 22 C 1.38384 * 120.14157 * 0.02562 * 21 20 19 23 23 C 1.38331 * 120.29653 * 359.97438 * 22 21 20 24 24 C 1.50700 * 119.93094 * 180.02562 * 23 22 21 25 25 N 1.46905 * 109.46948 * 269.97341 * 24 23 22 26 26 C 1.46911 * 110.99800 * 66.04393 * 25 24 23 27 27 C 1.46900 * 110.99990 * 189.99538 * 25 24 23 28 28 C 1.37985 * 120.14322 * 0.02562 * 23 22 21 29 29 H 1.09007 * 109.46628 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47217 * 299.99250 * 1 2 3 31 31 H 1.08995 * 109.47767 * 60.00077 * 1 2 3 32 32 H 1.08995 * 109.47317 * 294.99288 * 4 2 1 33 33 H 1.09000 * 109.47557 * 54.99710 * 4 2 1 34 34 H 1.09000 * 109.47069 * 299.99817 * 5 4 2 35 35 H 1.09000 * 109.46971 * 59.99567 * 5 4 2 36 36 H 1.08995 * 109.47516 * 299.99720 * 6 5 4 37 37 H 1.09000 * 109.47205 * 60.00048 * 6 5 4 38 38 H 0.96996 * 119.99875 * 359.97438 * 7 6 5 39 39 H 0.97002 * 120.00087 * 179.97438 * 11 10 8 40 40 H 0.97000 * 119.99817 * 95.00163 * 16 2 1 41 41 H 1.07997 * 120.07237 * 0.02562 * 20 19 17 42 42 H 1.07995 * 119.93102 * 179.97438 * 21 20 19 43 43 H 1.08005 * 119.84871 * 179.97438 * 22 21 20 44 44 H 1.08998 * 109.47315 * 29.96875 * 24 23 22 45 45 H 1.09000 * 109.47428 * 149.97607 * 24 23 22 46 46 H 1.09003 * 109.46677 * 60.00096 * 26 25 24 47 47 H 1.08994 * 109.46866 * 179.97438 * 26 25 24 48 48 H 1.08995 * 109.46911 * 300.00112 * 26 25 24 49 49 H 1.09004 * 109.46874 * 60.00587 * 27 25 24 50 50 H 1.08999 * 109.46530 * 179.97438 * 27 25 24 51 51 H 1.08994 * 109.47470 * 300.00055 * 27 25 24 52 52 H 1.08002 * 120.06988 * 179.72479 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0748 -1.3348 -2.5628 7 7 5.5348 -1.2309 -2.6249 8 6 6.2186 -1.8049 -3.6632 9 1 5.6816 -2.3346 -4.4361 10 6 7.6019 -1.7060 -3.7222 11 7 8.2563 -1.0600 -2.7805 12 14 8.5346 -2.4884 -5.1390 13 1 8.6656 -1.5082 -6.2469 14 1 9.8856 -2.8966 -4.6769 15 1 7.7942 -3.6826 -5.6195 16 7 2.0184 -0.6906 1.1961 17 6 2.1471 -0.0183 2.3571 18 8 1.8584 1.1612 2.4116 19 6 2.6405 -0.7152 3.5641 20 6 2.9734 -2.0696 3.5047 21 6 3.4327 -2.7139 4.6346 22 6 3.5631 -2.0207 5.8251 23 6 3.2350 -0.6785 5.8908 24 6 3.3808 0.0685 7.1915 25 7 2.1271 -0.0229 7.9518 26 6 1.8651 -1.4064 8.3707 27 6 2.1456 0.8828 9.1083 28 6 2.7744 -0.0221 4.7679 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.7517 -1.7714 -1.2057 33 1 1.6053 -0.2616 -2.1370 34 1 3.8531 0.4371 -1.3574 35 1 3.9994 -1.0727 -0.4261 36 1 3.7866 -2.3850 -2.5188 37 1 3.6402 -0.8757 -3.4507 38 1 6.0171 -0.7548 -1.9309 39 1 9.2230 -0.9911 -2.8216 40 1 2.2491 -1.6318 1.1525 41 1 2.8716 -2.6117 2.5763 42 1 3.6902 -3.7617 4.5901 43 1 3.9228 -2.5300 6.7071 44 1 4.1913 -0.3701 7.7735 45 1 3.6057 1.1151 6.9862 46 1 2.6825 -1.7560 9.0012 47 1 0.9315 -1.4454 8.9318 48 1 1.7871 -2.0440 7.4901 49 1 2.2714 1.9093 8.7639 50 1 1.2056 0.7954 9.6531 51 1 2.9731 0.6160 9.7655 52 1 2.5143 1.0248 4.8215 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725448924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:13 Heat of formation + Delta-G solvation = -8.195034 kcal Electronic energy + Delta-G solvation = -27911.297037 eV Core-core repulsion = 24103.465607 eV Total energy + Delta-G solvation = -3807.831430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.47607 -39.14322 -37.29639 -36.63953 -34.82808 -32.91515 -32.05882 -31.48790 -30.61534 -29.32214 -27.97350 -27.09451 -25.68612 -24.30907 -23.01969 -22.86595 -21.56507 -21.00593 -20.74191 -20.24287 -17.80068 -16.99872 -16.66221 -16.18348 -15.86505 -15.78041 -15.51158 -14.98077 -14.85704 -14.64684 -14.44191 -14.20574 -13.84520 -13.74000 -13.49281 -13.12965 -12.98458 -12.83921 -12.73451 -12.57375 -12.35641 -12.20494 -12.15089 -12.07711 -11.93201 -11.70777 -11.29124 -11.22926 -11.11019 -10.84520 -10.78819 -10.44579 -10.38715 -10.00260 -9.91961 -9.66866 -9.24448 -9.13512 -9.00674 -8.84741 -8.71586 -6.89366 -5.74083 -3.02804 0.66167 1.11258 2.74709 3.10602 3.44636 3.49286 3.51284 3.52024 3.86936 4.36039 4.47393 4.58225 4.61350 4.74809 4.78472 4.79776 4.93210 4.94664 5.02401 5.08575 5.09542 5.18171 5.19341 5.29766 5.35547 5.45061 5.48278 5.54377 5.58899 5.59259 5.60435 5.66275 5.74301 5.81426 5.98147 6.09289 6.10674 6.11738 6.15116 6.23104 6.25662 6.38281 6.43320 6.49866 6.55269 6.60462 6.66493 6.89058 6.92290 7.47451 7.71538 8.18826 8.44958 9.55625 10.15047 10.49333 11.48866 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.002126 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.753322 B =13166.907805 C =14561.499423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.090 0.910 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.908 3.092 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.716 5.716 17 C 0.560 3.440 18 O -0.539 6.539 19 C -0.132 4.132 20 C -0.083 4.083 21 C -0.126 4.126 22 C -0.090 4.090 23 C -0.091 4.091 24 C 0.094 3.906 25 N -0.542 5.542 26 C 0.020 3.980 27 C 0.024 3.976 28 C -0.038 4.038 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.016 0.984 37 H 0.017 0.983 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.400 0.600 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.046 0.954 45 H 0.087 0.913 46 H 0.025 0.975 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.069 0.931 51 H 0.025 0.975 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.320 -1.356 23.140 28.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.378 5.378 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.368 5.368 17 C 0.347 3.653 18 O -0.417 6.417 19 C -0.135 4.135 20 C -0.102 4.102 21 C -0.144 4.144 22 C -0.109 4.109 23 C -0.091 4.091 24 C -0.034 4.034 25 N -0.266 5.266 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.057 4.057 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.235 0.765 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.044 0.956 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.088 0.912 51 H 0.044 0.956 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.881 -0.442 22.701 28.293 hybrid contribution 1.586 -1.096 -0.076 1.929 sum -15.295 -1.537 22.625 27.353 Atomic orbital electron populations 1.22172 0.95388 1.02007 1.02464 1.21066 0.93645 0.97863 0.83728 0.89203 1.21856 0.96904 1.00751 0.96620 1.21736 0.93628 1.01511 0.99505 1.20648 0.86188 0.96414 0.94227 1.42384 1.00219 1.66194 1.29051 1.19244 0.89456 1.27058 1.01283 0.91214 1.24761 0.96474 1.01296 0.98666 1.69669 1.07186 1.47007 1.34390 0.86180 0.79361 0.78802 0.81793 1.21723 1.21779 1.20785 1.46019 1.67065 1.14142 1.09574 1.18243 0.77458 0.86462 0.83116 1.90761 1.50385 1.15489 1.85054 1.19973 1.04660 0.94431 0.94470 1.21349 0.96586 0.93399 0.98820 1.21066 1.00409 1.00378 0.92547 1.21231 0.98025 0.93709 0.97917 1.19632 1.00538 0.94071 0.94870 1.21073 0.90329 1.00606 0.91357 1.61981 1.33965 1.07586 1.23083 1.22485 1.00475 0.89369 1.00533 1.22401 1.01025 0.97183 0.91803 1.21096 0.93906 1.00434 0.90304 0.92543 0.92266 0.91498 0.91442 0.90188 0.91908 0.92082 0.96586 0.96499 0.78328 0.93536 0.76484 0.85497 0.85271 0.86005 0.93619 0.89506 0.95642 0.91399 0.90835 0.91104 0.91196 0.95599 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 2 C 0.14 1.68 2.57 -67.93 -0.17 1.51 16 3 H 0.09 1.26 7.58 -51.93 -0.39 0.86 16 4 C -0.12 -1.47 4.75 -26.73 -0.13 -1.60 16 5 C -0.13 -2.02 5.22 -26.73 -0.14 -2.16 16 6 C 0.15 3.09 6.26 -4.04 -0.03 3.06 16 7 N -0.73 -19.15 5.60 -59.91 -0.34 -19.49 16 8 C -0.24 -6.85 9.99 -15.06 -0.15 -7.01 16 9 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 10 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 11 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 12 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 14 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 16 N -0.72 -8.39 4.48 -54.75 -0.25 -8.63 16 17 C 0.56 7.70 7.74 -12.33 -0.10 7.60 16 18 O -0.54 -9.15 16.01 5.32 0.09 -9.07 16 19 C -0.13 -1.58 5.87 -104.97 -0.62 -2.19 16 20 C -0.08 -0.81 9.54 -39.19 -0.37 -1.18 16 21 C -0.13 -1.08 10.03 -39.64 -0.40 -1.48 16 22 C -0.09 -0.76 7.96 -39.49 -0.31 -1.07 16 23 C -0.09 -0.86 4.88 -104.68 -0.51 -1.37 16 24 C 0.09 0.75 5.11 -4.97 -0.03 0.73 16 25 N -0.54 -4.37 5.01 -252.71 -1.27 -5.63 16 26 C 0.02 0.13 9.14 60.07 0.55 0.68 16 27 C 0.02 0.15 9.57 60.06 0.57 0.72 16 28 C -0.04 -0.44 9.24 -39.18 -0.36 -0.80 16 29 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.99 7.75 -51.93 -0.40 0.59 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.38 10.55 7.67 -40.82 -0.31 10.24 16 39 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.40 3.89 6.64 -40.82 -0.27 3.62 16 41 H 0.13 1.01 6.41 -52.49 -0.34 0.68 16 42 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.78 8.03 -52.48 -0.42 0.36 16 44 H 0.05 0.32 8.06 -51.93 -0.42 -0.09 16 45 H 0.09 0.68 8.00 -51.93 -0.42 0.26 16 46 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 47 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 48 H 0.07 0.54 6.16 -51.93 -0.32 0.22 16 49 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 50 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 51 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 52 H 0.14 1.64 7.65 -52.49 -0.40 1.24 16 LS Contribution 421.82 15.07 6.36 6.36 Total: -1.00 -34.34 421.82 -10.79 -45.13 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -9.15 Total: 8.21 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.93 Total: -6.46 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -1.12 Total: -61.86 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.34 -10.79 -45.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725448924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.939 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds