Wall clock time and date at job start Tue Mar 31 2020 17:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46824 * 2 1 4 4 C 1.52999 * 109.46911 * 240.00487 * 2 1 3 5 5 C 1.53004 * 109.47110 * 174.99784 * 4 2 1 6 6 C 1.52995 * 109.47261 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.47280 * 179.97438 * 6 5 4 8 8 C 1.36935 * 120.00237 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00057 * 359.97438 * 8 7 6 10 10 C 1.38807 * 120.00087 * 179.97438 * 8 7 6 11 11 N 1.31624 * 120.00078 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00164 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47430 * 89.99991 * 12 10 8 14 14 H 1.48503 * 109.47228 * 210.00284 * 12 10 8 15 15 H 1.48500 * 109.46796 * 329.99695 * 12 10 8 16 16 N 1.46497 * 109.47361 * 120.00109 * 2 1 3 17 17 C 1.34777 * 120.00062 * 275.00218 * 16 2 1 18 18 O 1.21551 * 119.99742 * 359.97438 * 17 16 2 19 19 C 1.47847 * 119.99732 * 180.02562 * 17 16 2 20 20 C 1.39594 * 120.14739 * 359.97438 * 19 17 16 21 21 C 1.37933 * 119.85449 * 180.02562 * 20 19 17 22 22 C 1.38384 * 120.14157 * 0.02562 * 21 20 19 23 23 C 1.38331 * 120.29653 * 359.97438 * 22 21 20 24 24 C 1.50700 * 119.93094 * 180.02562 * 23 22 21 25 25 N 1.46905 * 109.46948 * 269.97341 * 24 23 22 26 26 C 1.46911 * 110.99800 * 66.04393 * 25 24 23 27 27 C 1.46900 * 110.99990 * 189.99538 * 25 24 23 28 28 C 1.37985 * 120.14322 * 0.02562 * 23 22 21 29 29 H 1.09007 * 109.46628 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47217 * 299.99250 * 1 2 3 31 31 H 1.08995 * 109.47767 * 60.00077 * 1 2 3 32 32 H 1.08995 * 109.47317 * 294.99288 * 4 2 1 33 33 H 1.09000 * 109.47557 * 54.99710 * 4 2 1 34 34 H 1.09000 * 109.47069 * 299.99817 * 5 4 2 35 35 H 1.09000 * 109.46971 * 59.99567 * 5 4 2 36 36 H 1.08995 * 109.47516 * 299.99720 * 6 5 4 37 37 H 1.09000 * 109.47205 * 60.00048 * 6 5 4 38 38 H 0.96996 * 119.99875 * 359.97438 * 7 6 5 39 39 H 0.97002 * 120.00087 * 179.97438 * 11 10 8 40 40 H 0.97000 * 119.99817 * 95.00163 * 16 2 1 41 41 H 1.07997 * 120.07237 * 0.02562 * 20 19 17 42 42 H 1.07995 * 119.93102 * 179.97438 * 21 20 19 43 43 H 1.08005 * 119.84871 * 179.97438 * 22 21 20 44 44 H 1.08998 * 109.47315 * 29.96875 * 24 23 22 45 45 H 1.09000 * 109.47428 * 149.97607 * 24 23 22 46 46 H 1.09003 * 109.46677 * 60.00096 * 26 25 24 47 47 H 1.08994 * 109.46866 * 179.97438 * 26 25 24 48 48 H 1.08995 * 109.46911 * 300.00112 * 26 25 24 49 49 H 1.09004 * 109.46874 * 60.00587 * 27 25 24 50 50 H 1.08999 * 109.46530 * 179.97438 * 27 25 24 51 51 H 1.08994 * 109.47470 * 300.00055 * 27 25 24 52 52 H 1.08002 * 120.06988 * 179.72479 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0748 -1.3348 -2.5628 7 7 5.5348 -1.2309 -2.6249 8 6 6.2186 -1.8049 -3.6632 9 1 5.6816 -2.3346 -4.4361 10 6 7.6019 -1.7060 -3.7222 11 7 8.2563 -1.0600 -2.7805 12 14 8.5346 -2.4884 -5.1390 13 1 8.6656 -1.5082 -6.2469 14 1 9.8856 -2.8966 -4.6769 15 1 7.7942 -3.6826 -5.6195 16 7 2.0184 -0.6906 1.1961 17 6 2.1471 -0.0183 2.3571 18 8 1.8584 1.1612 2.4116 19 6 2.6405 -0.7152 3.5641 20 6 2.9734 -2.0696 3.5047 21 6 3.4327 -2.7139 4.6346 22 6 3.5631 -2.0207 5.8251 23 6 3.2350 -0.6785 5.8908 24 6 3.3808 0.0685 7.1915 25 7 2.1271 -0.0229 7.9518 26 6 1.8651 -1.4064 8.3707 27 6 2.1456 0.8828 9.1083 28 6 2.7744 -0.0221 4.7679 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.7517 -1.7714 -1.2057 33 1 1.6053 -0.2616 -2.1370 34 1 3.8531 0.4371 -1.3574 35 1 3.9994 -1.0727 -0.4261 36 1 3.7866 -2.3850 -2.5188 37 1 3.6402 -0.8757 -3.4507 38 1 6.0171 -0.7548 -1.9309 39 1 9.2230 -0.9911 -2.8216 40 1 2.2491 -1.6318 1.1525 41 1 2.8716 -2.6117 2.5763 42 1 3.6902 -3.7617 4.5901 43 1 3.9228 -2.5300 6.7071 44 1 4.1913 -0.3701 7.7735 45 1 3.6057 1.1151 6.9862 46 1 2.6825 -1.7560 9.0012 47 1 0.9315 -1.4454 8.9318 48 1 1.7871 -2.0440 7.4901 49 1 2.2714 1.9093 8.7639 50 1 1.2056 0.7954 9.6531 51 1 2.9731 0.6160 9.7655 52 1 2.5143 1.0248 4.8215 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725448924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:12 Heat of formation + Delta-G solvation = -30.763889 kcal Electronic energy + Delta-G solvation = -27912.275696 eV Core-core repulsion = 24103.465607 eV Total energy + Delta-G solvation = -3808.810089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.39387 -39.97633 -38.07524 -37.73049 -36.51803 -34.29070 -33.29349 -32.35104 -31.82796 -30.69216 -28.48314 -27.72545 -27.24028 -25.36689 -24.55845 -23.62773 -22.45231 -22.24608 -21.84832 -21.18621 -19.13139 -18.65194 -17.63085 -16.99374 -16.64610 -16.51255 -16.43804 -16.21943 -16.04737 -15.79439 -15.37252 -15.35405 -15.27270 -15.01834 -14.69117 -14.45242 -13.94839 -13.73794 -13.44451 -13.42121 -13.22990 -13.16324 -13.01031 -12.95907 -12.82985 -12.77575 -12.49438 -12.40109 -12.37686 -12.24241 -12.06965 -11.90919 -11.85264 -11.72123 -11.50035 -10.99724 -10.93349 -10.21253 -9.87935 -9.83857 -9.28129 -9.00696 -7.95681 -5.25220 -0.14965 0.36051 1.46785 1.49255 1.57692 1.82812 2.15573 2.55769 2.77093 3.23116 3.37823 3.57466 3.69635 3.72274 3.92512 3.97655 4.08758 4.12293 4.18194 4.28835 4.30053 4.32939 4.40355 4.44592 4.54982 4.58686 4.61271 4.68029 4.71002 4.75910 4.82266 4.86262 4.88749 4.92834 4.99597 5.01863 5.02194 5.03854 5.11998 5.30423 5.32364 5.36866 5.40497 5.42942 5.50388 5.51847 5.56694 5.89585 6.02804 6.08570 6.26668 6.51772 7.18578 7.32000 8.09421 8.31398 9.28111 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.002126 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.753322 B =13166.907805 C =14561.499423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.142 3.858 3 H 0.063 0.937 4 C -0.109 4.109 5 C -0.113 4.113 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.246 4.246 9 H 0.078 0.922 10 C -0.081 4.081 11 N -0.972 5.972 12 Si 0.977 3.023 13 H -0.288 1.288 14 H -0.295 1.295 15 H -0.266 1.266 16 N -0.707 5.707 17 C 0.555 3.445 18 O -0.583 6.583 19 C -0.154 4.154 20 C -0.086 4.086 21 C -0.125 4.125 22 C -0.084 4.084 23 C -0.093 4.093 24 C 0.095 3.905 25 N -0.562 5.562 26 C 0.020 3.980 27 C 0.024 3.976 28 C -0.057 4.057 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.028 0.972 37 H 0.020 0.980 38 H 0.371 0.629 39 H 0.251 0.749 40 H 0.411 0.589 41 H 0.144 0.856 42 H 0.157 0.843 43 H 0.148 0.852 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.036 0.964 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.076 0.924 51 H 0.034 0.966 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.037 -3.817 23.246 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.147 4.147 5 C -0.151 4.151 6 C 0.024 3.976 7 N -0.393 5.393 8 C -0.378 4.378 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.806 3.194 13 H -0.215 1.215 14 H -0.221 1.221 15 H -0.191 1.191 16 N -0.359 5.359 17 C 0.344 3.656 18 O -0.465 6.465 19 C -0.157 4.157 20 C -0.104 4.104 21 C -0.142 4.142 22 C -0.102 4.102 23 C -0.093 4.093 24 C -0.032 4.032 25 N -0.286 5.286 26 C -0.127 4.127 27 C -0.123 4.123 28 C -0.077 4.077 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.038 0.962 38 H 0.202 0.798 39 H 0.060 0.940 40 H 0.249 0.751 41 H 0.162 0.838 42 H 0.175 0.825 43 H 0.166 0.834 44 H 0.077 0.923 45 H 0.099 0.901 46 H 0.055 0.945 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.095 0.905 51 H 0.053 0.947 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.649 -2.943 22.787 28.972 hybrid contribution 1.757 -0.336 -0.064 1.790 sum -15.891 -3.279 22.723 27.921 Atomic orbital electron populations 1.22095 0.93678 1.03120 1.02325 1.21017 0.94893 0.96558 0.83730 0.91830 1.21756 0.93544 1.02332 0.97037 1.21597 0.96501 0.99671 0.97380 1.20859 0.83139 0.97478 0.96124 1.42661 1.02577 1.65878 1.28200 1.19688 0.90027 1.26339 1.01769 0.90399 1.25650 0.97580 1.02521 1.01493 1.69837 1.07071 1.48869 1.36510 0.85088 0.77628 0.78259 0.78475 1.21464 1.22147 1.19105 1.45973 1.66312 1.14581 1.09010 1.18628 0.76860 0.86075 0.84080 1.90726 1.52542 1.17381 1.85803 1.19945 1.06413 0.95557 0.93766 1.21574 0.96200 0.92442 1.00214 1.21435 0.99230 1.01645 0.91938 1.21556 0.96683 0.93101 0.98899 1.19807 0.99989 0.94806 0.94722 1.21050 0.90912 1.00288 0.90929 1.61963 1.34014 1.08600 1.24042 1.22488 1.01198 0.88592 1.00465 1.22420 1.01737 0.96769 0.91407 1.21081 0.95365 0.99893 0.91353 0.90728 0.94003 0.90076 0.89125 0.88883 0.93729 0.92476 0.95424 0.96192 0.79765 0.94021 0.75149 0.83798 0.82499 0.83426 0.92273 0.90066 0.94515 0.90879 0.91435 0.91332 0.90529 0.94733 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.48 71.98 0.68 -2.30 16 2 C 0.14 3.31 2.57 44.99 0.12 3.42 16 3 H 0.06 1.84 7.58 -2.39 -0.02 1.82 16 4 C -0.11 -2.39 4.75 30.60 0.15 -2.24 16 5 C -0.11 -3.57 5.22 30.59 0.16 -3.41 16 6 C 0.15 5.90 6.26 86.38 0.54 6.44 16 7 N -0.75 -39.17 5.60 -343.47 -1.92 -41.09 16 8 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 9 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 10 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 11 N -0.97 -60.80 13.06 21.65 0.28 -60.52 16 12 Si 0.98 46.52 29.55 68.60 2.03 48.54 16 13 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 14 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 N -0.71 -16.36 4.48 -445.42 -2.00 -18.36 16 17 C 0.55 15.89 7.74 86.79 0.67 16.56 16 18 O -0.58 -21.21 16.01 -3.88 -0.06 -21.27 16 19 C -0.15 -3.76 5.87 -20.09 -0.12 -3.88 16 20 C -0.09 -1.57 9.54 22.52 0.21 -1.36 16 21 C -0.12 -1.85 10.03 22.23 0.22 -1.63 16 22 C -0.08 -1.24 7.96 22.33 0.18 -1.07 16 23 C -0.09 -1.73 4.88 -19.90 -0.10 -1.83 16 24 C 0.10 1.49 5.11 85.56 0.44 1.93 16 25 N -0.56 -8.67 5.01 -953.44 -4.78 -13.45 16 26 C 0.02 0.25 9.14 127.69 1.17 1.41 16 27 C 0.02 0.28 9.57 127.69 1.22 1.51 16 28 C -0.06 -1.39 9.24 22.53 0.21 -1.18 16 29 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.83 7.75 -2.39 -0.02 1.81 16 36 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.37 20.82 7.67 -92.71 -0.71 20.11 16 39 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 40 H 0.41 7.44 6.64 -92.71 -0.62 6.82 16 41 H 0.14 2.02 6.41 -2.91 -0.02 2.00 16 42 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.15 1.41 8.03 -2.91 -0.02 1.39 16 44 H 0.06 0.75 8.06 -2.39 -0.02 0.73 16 45 H 0.08 1.32 8.00 -2.39 -0.02 1.30 16 46 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 48 H 0.07 0.88 6.16 -2.39 -0.01 0.87 16 49 H 0.07 0.81 8.12 -2.38 -0.02 0.79 16 50 H 0.08 0.77 8.12 -2.39 -0.02 0.75 16 51 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 52 H 0.12 3.16 7.65 -2.91 -0.02 3.14 16 Total: -1.00 -75.47 421.82 0.18 -75.29 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.43 Total: 35.89 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 7.06 Total: -5.03 kcal Atomic # 7 Polarization: -125.00 SS G_CDS: -8.41 Total: -133.41 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.06 Total: -21.27 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -75.47 0.18 -75.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725448924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.523 kcal (2) G-P(sol) polarization free energy of solvation -75.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds