Wall clock time and date at job start Tue Mar 31 2020 18:14:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46496 * 109.47387 * 2 1
4 4 C 1.46494 * 120.00280 * 270.00437 * 3 2 1
5 5 C 1.53001 * 109.47297 * 269.99914 * 4 3 2
6 6 C 1.39050 * 119.99946 * 89.99742 * 3 2 1
7 7 C 1.39215 * 119.93600 * 179.97438 * 6 3 2
8 8 C 1.37605 * 120.07427 * 180.02562 * 7 6 3
9 9 C 1.39796 * 119.92618 * 0.02562 * 8 7 6
10 10 C 1.47526 * 120.06740 * 180.02562 * 9 8 7
11 11 O 1.21590 * 120.00390 * 221.64381 * 10 9 8
12 12 N 1.34783 * 119.99850 * 41.63622 * 10 9 8
13 13 C 1.46505 * 119.99874 * 355.47396 * 12 10 9
14 14 C 1.46496 * 119.99812 * 175.47408 * 12 10 9
15 15 C 1.52997 * 109.47310 * 90.00090 * 14 12 10
16 16 H 1.08996 * 109.47416 * 294.99971 * 15 14 12
17 17 C 1.53003 * 109.46927 * 175.00093 * 15 14 12
18 18 N 1.46497 * 109.47104 * 54.99873 * 15 14 12
19 19 C 1.36937 * 120.00234 * 204.99754 * 18 15 14
20 20 H 1.08005 * 119.99703 * 0.02562 * 19 18 15
21 21 C 1.38812 * 120.00430 * 179.97438 * 19 18 15
22 22 N 1.31618 * 119.99501 * 0.02562 * 21 19 18
23 23 Si 1.86804 * 120.00095 * 180.02562 * 21 19 18
24 24 H 1.48497 * 109.46905 * 90.00311 * 23 21 19
25 25 H 1.48502 * 109.46654 * 210.00016 * 23 21 19
26 26 H 1.48492 * 109.46905 * 330.00043 * 23 21 19
27 27 C 1.39792 * 119.86696 * 0.27543 * 9 8 7
28 28 C 1.37616 * 119.92599 * 359.41981 * 27 9 8
29 29 H 1.09011 * 109.47254 * 180.02562 * 1 2 3
30 30 H 1.08999 * 109.47257 * 299.99467 * 1 2 3
31 31 H 1.08997 * 109.47200 * 59.99960 * 1 2 3
32 32 H 1.09000 * 109.46798 * 240.00272 * 2 1 3
33 33 H 1.09002 * 109.47016 * 120.00753 * 2 1 3
34 34 H 1.09002 * 109.47068 * 29.99742 * 4 3 2
35 35 H 1.09005 * 109.47327 * 149.99425 * 4 3 2
36 36 H 1.08995 * 109.47205 * 179.97438 * 5 4 3
37 37 H 1.09002 * 109.46921 * 299.99918 * 5 4 3
38 38 H 1.08996 * 109.47096 * 59.99634 * 5 4 3
39 39 H 1.08001 * 119.95862 * 0.02998 * 7 6 3
40 40 H 1.08002 * 120.03399 * 180.02562 * 8 7 6
41 41 H 1.09002 * 109.46789 * 275.16986 * 13 12 10
42 42 H 1.08993 * 109.46896 * 35.17108 * 13 12 10
43 43 H 1.09000 * 109.46904 * 155.17500 * 13 12 10
44 44 H 1.09003 * 109.47351 * 329.99811 * 14 12 10
45 45 H 1.08999 * 109.46988 * 210.00143 * 14 12 10
46 46 H 1.09004 * 109.46847 * 299.99322 * 17 15 14
47 47 H 1.09006 * 109.47130 * 180.02562 * 17 15 14
48 48 H 1.08995 * 109.47240 * 60.00041 * 17 15 14
49 49 H 0.97001 * 119.99835 * 25.00399 * 18 15 14
50 50 H 0.97001 * 119.99446 * 179.97438 * 22 21 19
51 51 H 1.07993 * 120.03691 * 179.72653 * 27 9 8
52 52 H 1.07998 * 119.96305 * 180.29071 * 28 27 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2625 2.0718 -1.2686
5 6 3.7075 1.8314 -1.7104
6 6 2.2501 2.0366 1.2042
7 6 2.7147 3.3490 1.2027
8 6 2.9455 4.0002 2.3927
9 6 2.7134 3.3423 3.6042
10 6 2.9592 4.0377 4.8818
11 8 3.4934 3.4487 5.8017
12 7 2.5918 5.3260 5.0294
13 6 2.0394 6.0652 3.8915
14 6 2.7448 5.9872 6.3277
15 6 4.1267 6.6388 6.4085
16 1 4.8948 5.8658 6.3863
17 6 4.2404 7.4335 7.7111
18 7 4.3086 7.5408 5.2686
19 6 5.5695 7.8370 4.8242
20 1 6.4299 7.4052 5.3139
21 6 5.7419 8.6913 3.7438
22 7 4.6934 9.2171 3.1468
23 14 7.4621 9.0947 3.1372
24 1 7.8664 8.1081 2.1036
25 1 7.4727 10.4588 2.5505
26 1 8.4142 9.0378 4.2753
27 6 2.2528 2.0224 3.6025
28 6 2.0180 1.3787 2.4090
29 1 -0.3634 -1.0278 0.0005
30 1 -0.3634 0.5137 0.8900
31 1 -0.3633 0.5138 -0.8899
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5140 0.8899
34 1 1.5816 1.6877 -2.0283
35 1 2.0955 3.1411 -1.1383
36 1 3.8889 2.3449 -2.6546
37 1 4.3883 2.2155 -0.9508
38 1 3.8744 0.7622 -1.8408
39 1 2.8941 3.8565 0.2664
40 1 3.3055 5.0184 2.3908
41 1 2.8541 6.4723 3.2927
42 1 1.4388 5.3930 3.2788
43 1 1.4144 6.8802 4.2565
44 1 2.6432 5.2506 7.1248
45 1 1.9756 6.7514 6.4392
46 1 3.4723 8.2066 7.7332
47 1 5.2247 7.8982 7.7685
48 1 4.1050 6.7623 8.5591
49 1 3.5358 7.9284 4.8287
50 1 4.8139 9.8143 2.3920
51 1 2.0768 1.5101 4.5367
52 1 1.6577 0.3606 2.4070
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001725513967.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:14:19
Heat of formation + Delta-G solvation = 15.970307 kcal
Electronic energy + Delta-G solvation = -29574.575425 eV
Core-core repulsion = 25767.791883 eV
Total energy + Delta-G solvation = -3806.783542 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 333.216 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.19450 -39.05812 -36.71035 -36.02545 -34.14446 -32.77623 -32.09717 -31.03397
-30.56671 -28.81950 -28.16073 -26.70058 -25.55114 -24.25806 -23.74561 -23.09228
-21.93880 -20.75041 -20.05091 -19.06492 -17.54780 -17.21233 -16.69578 -16.28802
-15.77661 -15.08048 -14.90683 -14.74212 -14.36491 -14.14973 -14.09615 -13.76714
-13.57018 -13.49336 -13.19207 -12.94567 -12.81207 -12.50890 -12.41894 -12.26414
-12.11184 -12.05938 -11.98642 -11.94870 -11.68907 -11.39438 -11.29720 -11.24452
-11.11310 -10.82213 -10.66326 -10.57832 -10.26928 -10.01856 -9.85444 -9.60035
-9.31458 -8.88013 -8.82652 -8.01126 -7.31707 -6.88677 -5.73522 -2.99531
1.37708 1.58339 2.89927 3.24870 3.45594 3.51527 3.52913 3.58164
4.05715 4.56214 4.63656 4.64268 4.83701 4.96772 5.00671 5.02100
5.10015 5.14040 5.18655 5.29804 5.43148 5.49280 5.55030 5.57045
5.60953 5.62901 5.65170 5.69612 5.76713 5.78041 5.87945 5.95356
5.99557 6.02964 6.15656 6.19859 6.28730 6.35680 6.41920 6.44588
6.51895 6.69481 6.70583 6.85396 6.93211 6.99601 7.14884 7.26088
7.42245 7.76447 7.93664 8.46139 8.71284 9.57598 10.14574 10.51307
11.49319
Molecular weight = 333.22amu
Principal moments of inertia in cm(-1)
A = 0.011687 B = 0.003363 C = 0.002787
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2395.282132 B = 8323.027209 C =10042.607479
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.117 3.883
3 N -0.625 5.625
4 C 0.117 3.883
5 C -0.174 4.174
6 C 0.234 3.766
7 C -0.206 4.206
8 C -0.035 4.035
9 C -0.183 4.183
10 C 0.564 3.436
11 O -0.553 6.553
12 N -0.591 5.591
13 C 0.078 3.922
14 C 0.113 3.887
15 C 0.154 3.846
16 H 0.052 0.948
17 C -0.162 4.162
18 N -0.719 5.719
19 C -0.226 4.226
20 H 0.067 0.933
21 C -0.015 4.015
22 N -0.936 5.936
23 Si 0.902 3.098
24 H -0.291 1.291
25 H -0.293 1.293
26 H -0.284 1.284
27 C -0.021 4.021
28 C -0.211 4.211
29 H 0.062 0.938
30 H 0.060 0.940
31 H 0.055 0.945
32 H 0.071 0.929
33 H 0.076 0.924
34 H 0.071 0.929
35 H 0.079 0.921
36 H 0.064 0.936
37 H 0.062 0.938
38 H 0.054 0.946
39 H 0.126 0.874
40 H 0.141 0.859
41 H 0.080 0.920
42 H 0.063 0.937
43 H 0.066 0.934
44 H 0.078 0.922
45 H 0.071 0.929
46 H 0.045 0.955
47 H 0.054 0.946
48 H 0.038 0.962
49 H 0.382 0.618
50 H 0.253 0.747
51 H 0.125 0.875
52 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.267 -16.616 -7.931 21.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C -0.006 4.006
3 N -0.334 5.334
4 C -0.006 4.006
5 C -0.232 4.232
6 C 0.131 3.869
7 C -0.228 4.228
8 C -0.054 4.054
9 C -0.188 4.188
10 C 0.353 3.647
11 O -0.433 6.433
12 N -0.322 5.322
13 C -0.065 4.065
14 C -0.011 4.011
15 C 0.043 3.957
16 H 0.070 0.930
17 C -0.222 4.222
18 N -0.361 5.361
19 C -0.358 4.358
20 H 0.085 0.915
21 C -0.210 4.210
22 N -0.585 5.585
23 Si 0.734 3.266
24 H -0.219 1.219
25 H -0.219 1.219
26 H -0.209 1.209
27 C -0.041 4.041
28 C -0.234 4.234
29 H 0.081 0.919
30 H 0.079 0.921
31 H 0.074 0.926
32 H 0.090 0.910
33 H 0.095 0.905
34 H 0.090 0.910
35 H 0.097 0.903
36 H 0.083 0.917
37 H 0.081 0.919
38 H 0.073 0.927
39 H 0.143 0.857
40 H 0.159 0.841
41 H 0.099 0.901
42 H 0.082 0.918
43 H 0.085 0.915
44 H 0.096 0.904
45 H 0.089 0.911
46 H 0.065 0.935
47 H 0.074 0.926
48 H 0.057 0.943
49 H 0.216 0.784
50 H 0.063 0.937
51 H 0.143 0.857
52 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -10.852 -16.979 -7.656 21.556
hybrid contribution 0.809 0.590 -0.672 1.205
sum -10.043 -16.389 -8.327 20.948
Atomic orbital electron populations
1.22231 0.96374 1.01870 1.02631 1.21388 0.93976 0.82586 1.02632
1.46533 1.70796 1.13082 1.03037 1.21415 0.96294 0.98044 0.84859
1.22233 0.97375 1.01925 1.01689 1.17949 0.91939 0.91330 0.85633
1.20623 1.09528 0.93963 0.98670 1.21519 0.93197 0.99929 0.90743
1.19643 1.10170 0.95803 0.93188 1.18195 0.77942 0.81284 0.87238
1.90722 1.43175 1.66851 1.42509 1.47488 1.62192 1.10641 1.11838
1.22123 0.99262 0.95924 0.89177 1.21849 0.98559 0.96223 0.84439
1.20660 0.94471 0.92196 0.88383 0.92958 1.22368 1.01914 0.99972
0.97982 1.42383 1.05908 1.53869 1.33988 1.19241 0.85134 1.21512
1.09874 0.91481 1.24641 0.96845 1.00571 0.98974 1.69638 1.27533
1.36365 1.25002 0.86249 0.84465 0.77266 0.78630 1.21910 1.21927
1.20934 1.20831 0.93374 0.92312 0.97560 1.20512 1.11352 1.00720
0.90769 0.91901 0.92070 0.92594 0.91021 0.90533 0.91033 0.90295
0.91748 0.91901 0.92723 0.85656 0.84141 0.90132 0.91846 0.91513
0.90382 0.91086 0.93543 0.92643 0.94344 0.78419 0.93736 0.85720
0.85918
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.13 10.24 37.16 0.38 -0.75 16
2 C 0.12 0.85 5.86 -4.04 -0.02 0.83 16
3 N -0.62 -5.86 2.59 -171.76 -0.44 -6.31 16
4 C 0.12 0.93 5.86 -4.04 -0.02 0.91 16
5 C -0.17 -1.39 10.24 37.16 0.38 -1.00 16
6 C 0.23 2.81 6.55 -83.86 -0.55 2.26 16
7 C -0.21 -2.72 9.18 -39.45 -0.36 -3.08 16
8 C -0.03 -0.54 7.60 -39.23 -0.30 -0.84 16
9 C -0.18 -3.02 5.15 -104.95 -0.54 -3.56 16
10 C 0.56 10.83 7.31 -12.47 -0.09 10.74 16
11 O -0.55 -12.19 16.56 5.29 0.09 -12.11 16
12 N -0.59 -10.70 2.73 -182.81 -0.50 -11.20 16
13 C 0.08 1.28 7.54 59.85 0.45 1.73 16
14 C 0.11 2.02 5.04 -4.05 -0.02 2.00 16
15 C 0.15 3.23 3.20 -67.93 -0.22 3.01 16
16 H 0.05 1.24 8.08 -51.93 -0.42 0.82 16
17 C -0.16 -3.04 9.49 37.16 0.35 -2.68 16
18 N -0.72 -17.60 4.47 -53.43 -0.24 -17.84 16
19 C -0.23 -6.24 9.93 -15.06 -0.15 -6.39 16
20 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16
21 C -0.02 -0.42 5.50 -17.43 -0.10 -0.52 16
22 N -0.94 -27.00 13.06 55.49 0.72 -26.28 16
23 Si 0.90 22.47 29.55 -169.99 -5.02 17.44 16
24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16
26 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16
27 C -0.02 -0.30 9.64 -39.23 -0.38 -0.68 16
28 C -0.21 -2.57 9.18 -39.44 -0.36 -2.93 16
29 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16
30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
32 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16
33 H 0.08 0.56 6.17 -51.93 -0.32 0.24 16
34 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16
35 H 0.08 0.65 6.17 -51.93 -0.32 0.33 16
36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16
37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
38 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16
39 H 0.13 1.48 6.11 -52.49 -0.32 1.16 16
40 H 0.14 2.36 5.53 -52.49 -0.29 2.07 16
41 H 0.08 1.55 6.42 -51.93 -0.33 1.22 16
42 H 0.06 0.90 6.00 -51.93 -0.31 0.59 16
43 H 0.07 1.02 7.83 -51.93 -0.41 0.61 16
44 H 0.08 1.36 7.49 -51.93 -0.39 0.98 16
45 H 0.07 1.14 7.86 -51.93 -0.41 0.74 16
46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16
47 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16
48 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16
49 H 0.38 9.55 6.38 -40.82 -0.26 9.29 16
50 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16
51 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16
52 H 0.12 1.22 6.11 -52.49 -0.32 0.90 16
LS Contribution 411.56 15.07 6.20 6.20
Total: -1.00 -32.04 411.56 -9.45 -41.49
By element:
Atomic # 1 Polarization: 18.28 SS G_CDS: -8.71 Total: 9.56 kcal
Atomic # 6 Polarization: 0.58 SS G_CDS: -1.55 Total: -0.97 kcal
Atomic # 7 Polarization: -61.16 SS G_CDS: -0.46 Total: -61.62 kcal
Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.11 kcal
Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal
Total LS contribution 6.20 Total: 6.20 kcal
Total: -32.04 -9.45 -41.49 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725513967.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.458 kcal
(2) G-P(sol) polarization free energy of solvation -32.036 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.423 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.970 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds