Wall clock time and date at job start Tue Mar 31 2020 18:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47387 * 2 1 4 4 C 1.46494 * 120.00280 * 270.00437 * 3 2 1 5 5 C 1.53001 * 109.47297 * 269.99914 * 4 3 2 6 6 C 1.39050 * 119.99946 * 89.99742 * 3 2 1 7 7 C 1.39215 * 119.93600 * 179.97438 * 6 3 2 8 8 C 1.37605 * 120.07427 * 180.02562 * 7 6 3 9 9 C 1.39796 * 119.92618 * 0.02562 * 8 7 6 10 10 C 1.47526 * 120.06740 * 180.02562 * 9 8 7 11 11 O 1.21590 * 120.00390 * 221.64381 * 10 9 8 12 12 N 1.34783 * 119.99850 * 41.63622 * 10 9 8 13 13 C 1.46505 * 119.99874 * 355.47396 * 12 10 9 14 14 C 1.46496 * 119.99812 * 175.47408 * 12 10 9 15 15 C 1.52997 * 109.47310 * 90.00090 * 14 12 10 16 16 H 1.08996 * 109.47416 * 294.99971 * 15 14 12 17 17 C 1.53003 * 109.46927 * 175.00093 * 15 14 12 18 18 N 1.46497 * 109.47104 * 54.99873 * 15 14 12 19 19 C 1.36937 * 120.00234 * 204.99754 * 18 15 14 20 20 H 1.08005 * 119.99703 * 0.02562 * 19 18 15 21 21 C 1.38812 * 120.00430 * 179.97438 * 19 18 15 22 22 N 1.31618 * 119.99501 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00095 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46905 * 90.00311 * 23 21 19 25 25 H 1.48502 * 109.46654 * 210.00016 * 23 21 19 26 26 H 1.48492 * 109.46905 * 330.00043 * 23 21 19 27 27 C 1.39792 * 119.86696 * 0.27543 * 9 8 7 28 28 C 1.37616 * 119.92599 * 359.41981 * 27 9 8 29 29 H 1.09011 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47257 * 299.99467 * 1 2 3 31 31 H 1.08997 * 109.47200 * 59.99960 * 1 2 3 32 32 H 1.09000 * 109.46798 * 240.00272 * 2 1 3 33 33 H 1.09002 * 109.47016 * 120.00753 * 2 1 3 34 34 H 1.09002 * 109.47068 * 29.99742 * 4 3 2 35 35 H 1.09005 * 109.47327 * 149.99425 * 4 3 2 36 36 H 1.08995 * 109.47205 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.46921 * 299.99918 * 5 4 3 38 38 H 1.08996 * 109.47096 * 59.99634 * 5 4 3 39 39 H 1.08001 * 119.95862 * 0.02998 * 7 6 3 40 40 H 1.08002 * 120.03399 * 180.02562 * 8 7 6 41 41 H 1.09002 * 109.46789 * 275.16986 * 13 12 10 42 42 H 1.08993 * 109.46896 * 35.17108 * 13 12 10 43 43 H 1.09000 * 109.46904 * 155.17500 * 13 12 10 44 44 H 1.09003 * 109.47351 * 329.99811 * 14 12 10 45 45 H 1.08999 * 109.46988 * 210.00143 * 14 12 10 46 46 H 1.09004 * 109.46847 * 299.99322 * 17 15 14 47 47 H 1.09006 * 109.47130 * 180.02562 * 17 15 14 48 48 H 1.08995 * 109.47240 * 60.00041 * 17 15 14 49 49 H 0.97001 * 119.99835 * 25.00399 * 18 15 14 50 50 H 0.97001 * 119.99446 * 179.97438 * 22 21 19 51 51 H 1.07993 * 120.03691 * 179.72653 * 27 9 8 52 52 H 1.07998 * 119.96305 * 180.29071 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.7075 1.8314 -1.7104 6 6 2.2501 2.0366 1.2042 7 6 2.7147 3.3490 1.2027 8 6 2.9455 4.0002 2.3927 9 6 2.7134 3.3423 3.6042 10 6 2.9592 4.0377 4.8818 11 8 3.4934 3.4487 5.8017 12 7 2.5918 5.3260 5.0294 13 6 2.0394 6.0652 3.8915 14 6 2.7448 5.9872 6.3277 15 6 4.1267 6.6388 6.4085 16 1 4.8948 5.8658 6.3863 17 6 4.2404 7.4335 7.7111 18 7 4.3086 7.5408 5.2686 19 6 5.5695 7.8370 4.8242 20 1 6.4299 7.4052 5.3139 21 6 5.7419 8.6913 3.7438 22 7 4.6934 9.2171 3.1468 23 14 7.4621 9.0947 3.1372 24 1 7.8664 8.1081 2.1036 25 1 7.4727 10.4588 2.5505 26 1 8.4142 9.0378 4.2753 27 6 2.2528 2.0224 3.6025 28 6 2.0180 1.3787 2.4090 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 1.5816 1.6877 -2.0283 35 1 2.0955 3.1411 -1.1383 36 1 3.8889 2.3449 -2.6546 37 1 4.3883 2.2155 -0.9508 38 1 3.8744 0.7622 -1.8408 39 1 2.8941 3.8565 0.2664 40 1 3.3055 5.0184 2.3908 41 1 2.8541 6.4723 3.2927 42 1 1.4388 5.3930 3.2788 43 1 1.4144 6.8802 4.2565 44 1 2.6432 5.2506 7.1248 45 1 1.9756 6.7514 6.4392 46 1 3.4723 8.2066 7.7332 47 1 5.2247 7.8982 7.7685 48 1 4.1050 6.7623 8.5591 49 1 3.5358 7.9284 4.8287 50 1 4.8139 9.8143 2.3920 51 1 2.0768 1.5101 4.5367 52 1 1.6577 0.3606 2.4070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725513967.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:19 Heat of formation + Delta-G solvation = 15.970307 kcal Electronic energy + Delta-G solvation = -29574.575425 eV Core-core repulsion = 25767.791883 eV Total energy + Delta-G solvation = -3806.783542 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.19450 -39.05812 -36.71035 -36.02545 -34.14446 -32.77623 -32.09717 -31.03397 -30.56671 -28.81950 -28.16073 -26.70058 -25.55114 -24.25806 -23.74561 -23.09228 -21.93880 -20.75041 -20.05091 -19.06492 -17.54780 -17.21233 -16.69578 -16.28802 -15.77661 -15.08048 -14.90683 -14.74212 -14.36491 -14.14973 -14.09615 -13.76714 -13.57018 -13.49336 -13.19207 -12.94567 -12.81207 -12.50890 -12.41894 -12.26414 -12.11184 -12.05938 -11.98642 -11.94870 -11.68907 -11.39438 -11.29720 -11.24452 -11.11310 -10.82213 -10.66326 -10.57832 -10.26928 -10.01856 -9.85444 -9.60035 -9.31458 -8.88013 -8.82652 -8.01126 -7.31707 -6.88677 -5.73522 -2.99531 1.37708 1.58339 2.89927 3.24870 3.45594 3.51527 3.52913 3.58164 4.05715 4.56214 4.63656 4.64268 4.83701 4.96772 5.00671 5.02100 5.10015 5.14040 5.18655 5.29804 5.43148 5.49280 5.55030 5.57045 5.60953 5.62901 5.65170 5.69612 5.76713 5.78041 5.87945 5.95356 5.99557 6.02964 6.15656 6.19859 6.28730 6.35680 6.41920 6.44588 6.51895 6.69481 6.70583 6.85396 6.93211 6.99601 7.14884 7.26088 7.42245 7.76447 7.93664 8.46139 8.71284 9.57598 10.14574 10.51307 11.49319 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.003363 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.282132 B = 8323.027209 C =10042.607479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.117 3.883 3 N -0.625 5.625 4 C 0.117 3.883 5 C -0.174 4.174 6 C 0.234 3.766 7 C -0.206 4.206 8 C -0.035 4.035 9 C -0.183 4.183 10 C 0.564 3.436 11 O -0.553 6.553 12 N -0.591 5.591 13 C 0.078 3.922 14 C 0.113 3.887 15 C 0.154 3.846 16 H 0.052 0.948 17 C -0.162 4.162 18 N -0.719 5.719 19 C -0.226 4.226 20 H 0.067 0.933 21 C -0.015 4.015 22 N -0.936 5.936 23 Si 0.902 3.098 24 H -0.291 1.291 25 H -0.293 1.293 26 H -0.284 1.284 27 C -0.021 4.021 28 C -0.211 4.211 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.126 0.874 40 H 0.141 0.859 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.045 0.955 47 H 0.054 0.946 48 H 0.038 0.962 49 H 0.382 0.618 50 H 0.253 0.747 51 H 0.125 0.875 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.267 -16.616 -7.931 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.006 4.006 3 N -0.334 5.334 4 C -0.006 4.006 5 C -0.232 4.232 6 C 0.131 3.869 7 C -0.228 4.228 8 C -0.054 4.054 9 C -0.188 4.188 10 C 0.353 3.647 11 O -0.433 6.433 12 N -0.322 5.322 13 C -0.065 4.065 14 C -0.011 4.011 15 C 0.043 3.957 16 H 0.070 0.930 17 C -0.222 4.222 18 N -0.361 5.361 19 C -0.358 4.358 20 H 0.085 0.915 21 C -0.210 4.210 22 N -0.585 5.585 23 Si 0.734 3.266 24 H -0.219 1.219 25 H -0.219 1.219 26 H -0.209 1.209 27 C -0.041 4.041 28 C -0.234 4.234 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.143 0.857 40 H 0.159 0.841 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.057 0.943 49 H 0.216 0.784 50 H 0.063 0.937 51 H 0.143 0.857 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.852 -16.979 -7.656 21.556 hybrid contribution 0.809 0.590 -0.672 1.205 sum -10.043 -16.389 -8.327 20.948 Atomic orbital electron populations 1.22231 0.96374 1.01870 1.02631 1.21388 0.93976 0.82586 1.02632 1.46533 1.70796 1.13082 1.03037 1.21415 0.96294 0.98044 0.84859 1.22233 0.97375 1.01925 1.01689 1.17949 0.91939 0.91330 0.85633 1.20623 1.09528 0.93963 0.98670 1.21519 0.93197 0.99929 0.90743 1.19643 1.10170 0.95803 0.93188 1.18195 0.77942 0.81284 0.87238 1.90722 1.43175 1.66851 1.42509 1.47488 1.62192 1.10641 1.11838 1.22123 0.99262 0.95924 0.89177 1.21849 0.98559 0.96223 0.84439 1.20660 0.94471 0.92196 0.88383 0.92958 1.22368 1.01914 0.99972 0.97982 1.42383 1.05908 1.53869 1.33988 1.19241 0.85134 1.21512 1.09874 0.91481 1.24641 0.96845 1.00571 0.98974 1.69638 1.27533 1.36365 1.25002 0.86249 0.84465 0.77266 0.78630 1.21910 1.21927 1.20934 1.20831 0.93374 0.92312 0.97560 1.20512 1.11352 1.00720 0.90769 0.91901 0.92070 0.92594 0.91021 0.90533 0.91033 0.90295 0.91748 0.91901 0.92723 0.85656 0.84141 0.90132 0.91846 0.91513 0.90382 0.91086 0.93543 0.92643 0.94344 0.78419 0.93736 0.85720 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.24 37.16 0.38 -0.75 16 2 C 0.12 0.85 5.86 -4.04 -0.02 0.83 16 3 N -0.62 -5.86 2.59 -171.76 -0.44 -6.31 16 4 C 0.12 0.93 5.86 -4.04 -0.02 0.91 16 5 C -0.17 -1.39 10.24 37.16 0.38 -1.00 16 6 C 0.23 2.81 6.55 -83.86 -0.55 2.26 16 7 C -0.21 -2.72 9.18 -39.45 -0.36 -3.08 16 8 C -0.03 -0.54 7.60 -39.23 -0.30 -0.84 16 9 C -0.18 -3.02 5.15 -104.95 -0.54 -3.56 16 10 C 0.56 10.83 7.31 -12.47 -0.09 10.74 16 11 O -0.55 -12.19 16.56 5.29 0.09 -12.11 16 12 N -0.59 -10.70 2.73 -182.81 -0.50 -11.20 16 13 C 0.08 1.28 7.54 59.85 0.45 1.73 16 14 C 0.11 2.02 5.04 -4.05 -0.02 2.00 16 15 C 0.15 3.23 3.20 -67.93 -0.22 3.01 16 16 H 0.05 1.24 8.08 -51.93 -0.42 0.82 16 17 C -0.16 -3.04 9.49 37.16 0.35 -2.68 16 18 N -0.72 -17.60 4.47 -53.43 -0.24 -17.84 16 19 C -0.23 -6.24 9.93 -15.06 -0.15 -6.39 16 20 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 21 C -0.02 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.94 -27.00 13.06 55.49 0.72 -26.28 16 23 Si 0.90 22.47 29.55 -169.99 -5.02 17.44 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 27 C -0.02 -0.30 9.64 -39.23 -0.38 -0.68 16 28 C -0.21 -2.57 9.18 -39.44 -0.36 -2.93 16 29 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 33 H 0.08 0.56 6.17 -51.93 -0.32 0.24 16 34 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 35 H 0.08 0.65 6.17 -51.93 -0.32 0.33 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.13 1.48 6.11 -52.49 -0.32 1.16 16 40 H 0.14 2.36 5.53 -52.49 -0.29 2.07 16 41 H 0.08 1.55 6.42 -51.93 -0.33 1.22 16 42 H 0.06 0.90 6.00 -51.93 -0.31 0.59 16 43 H 0.07 1.02 7.83 -51.93 -0.41 0.61 16 44 H 0.08 1.36 7.49 -51.93 -0.39 0.98 16 45 H 0.07 1.14 7.86 -51.93 -0.41 0.74 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 48 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.38 9.55 6.38 -40.82 -0.26 9.29 16 50 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 52 H 0.12 1.22 6.11 -52.49 -0.32 0.90 16 LS Contribution 411.56 15.07 6.20 6.20 Total: -1.00 -32.04 411.56 -9.45 -41.49 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -8.71 Total: 9.56 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.55 Total: -0.97 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.46 Total: -61.62 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.04 -9.45 -41.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725513967.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.458 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds