Wall clock time and date at job start Tue Mar 31 2020 18:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47387 * 2 1 4 4 C 1.46494 * 120.00280 * 270.00437 * 3 2 1 5 5 C 1.53001 * 109.47297 * 269.99914 * 4 3 2 6 6 C 1.39050 * 119.99946 * 89.99742 * 3 2 1 7 7 C 1.39215 * 119.93600 * 179.97438 * 6 3 2 8 8 C 1.37605 * 120.07427 * 180.02562 * 7 6 3 9 9 C 1.39796 * 119.92618 * 0.02562 * 8 7 6 10 10 C 1.47526 * 120.06740 * 180.02562 * 9 8 7 11 11 O 1.21590 * 120.00390 * 221.64381 * 10 9 8 12 12 N 1.34783 * 119.99850 * 41.63622 * 10 9 8 13 13 C 1.46505 * 119.99874 * 355.47396 * 12 10 9 14 14 C 1.46496 * 119.99812 * 175.47408 * 12 10 9 15 15 C 1.52997 * 109.47310 * 90.00090 * 14 12 10 16 16 H 1.08996 * 109.47416 * 294.99971 * 15 14 12 17 17 C 1.53003 * 109.46927 * 175.00093 * 15 14 12 18 18 N 1.46497 * 109.47104 * 54.99873 * 15 14 12 19 19 C 1.36937 * 120.00234 * 204.99754 * 18 15 14 20 20 H 1.08005 * 119.99703 * 0.02562 * 19 18 15 21 21 C 1.38812 * 120.00430 * 179.97438 * 19 18 15 22 22 N 1.31618 * 119.99501 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00095 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46905 * 90.00311 * 23 21 19 25 25 H 1.48502 * 109.46654 * 210.00016 * 23 21 19 26 26 H 1.48492 * 109.46905 * 330.00043 * 23 21 19 27 27 C 1.39792 * 119.86696 * 0.27543 * 9 8 7 28 28 C 1.37616 * 119.92599 * 359.41981 * 27 9 8 29 29 H 1.09011 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47257 * 299.99467 * 1 2 3 31 31 H 1.08997 * 109.47200 * 59.99960 * 1 2 3 32 32 H 1.09000 * 109.46798 * 240.00272 * 2 1 3 33 33 H 1.09002 * 109.47016 * 120.00753 * 2 1 3 34 34 H 1.09002 * 109.47068 * 29.99742 * 4 3 2 35 35 H 1.09005 * 109.47327 * 149.99425 * 4 3 2 36 36 H 1.08995 * 109.47205 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.46921 * 299.99918 * 5 4 3 38 38 H 1.08996 * 109.47096 * 59.99634 * 5 4 3 39 39 H 1.08001 * 119.95862 * 0.02998 * 7 6 3 40 40 H 1.08002 * 120.03399 * 180.02562 * 8 7 6 41 41 H 1.09002 * 109.46789 * 275.16986 * 13 12 10 42 42 H 1.08993 * 109.46896 * 35.17108 * 13 12 10 43 43 H 1.09000 * 109.46904 * 155.17500 * 13 12 10 44 44 H 1.09003 * 109.47351 * 329.99811 * 14 12 10 45 45 H 1.08999 * 109.46988 * 210.00143 * 14 12 10 46 46 H 1.09004 * 109.46847 * 299.99322 * 17 15 14 47 47 H 1.09006 * 109.47130 * 180.02562 * 17 15 14 48 48 H 1.08995 * 109.47240 * 60.00041 * 17 15 14 49 49 H 0.97001 * 119.99835 * 25.00399 * 18 15 14 50 50 H 0.97001 * 119.99446 * 179.97438 * 22 21 19 51 51 H 1.07993 * 120.03691 * 179.72653 * 27 9 8 52 52 H 1.07998 * 119.96305 * 180.29071 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.7075 1.8314 -1.7104 6 6 2.2501 2.0366 1.2042 7 6 2.7147 3.3490 1.2027 8 6 2.9455 4.0002 2.3927 9 6 2.7134 3.3423 3.6042 10 6 2.9592 4.0377 4.8818 11 8 3.4934 3.4487 5.8017 12 7 2.5918 5.3260 5.0294 13 6 2.0394 6.0652 3.8915 14 6 2.7448 5.9872 6.3277 15 6 4.1267 6.6388 6.4085 16 1 4.8948 5.8658 6.3863 17 6 4.2404 7.4335 7.7111 18 7 4.3086 7.5408 5.2686 19 6 5.5695 7.8370 4.8242 20 1 6.4299 7.4052 5.3139 21 6 5.7419 8.6913 3.7438 22 7 4.6934 9.2171 3.1468 23 14 7.4621 9.0947 3.1372 24 1 7.8664 8.1081 2.1036 25 1 7.4727 10.4588 2.5505 26 1 8.4142 9.0378 4.2753 27 6 2.2528 2.0224 3.6025 28 6 2.0180 1.3787 2.4090 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 1.5816 1.6877 -2.0283 35 1 2.0955 3.1411 -1.1383 36 1 3.8889 2.3449 -2.6546 37 1 4.3883 2.2155 -0.9508 38 1 3.8744 0.7622 -1.8408 39 1 2.8941 3.8565 0.2664 40 1 3.3055 5.0184 2.3908 41 1 2.8541 6.4723 3.2927 42 1 1.4388 5.3930 3.2788 43 1 1.4144 6.8802 4.2565 44 1 2.6432 5.2506 7.1248 45 1 1.9756 6.7514 6.4392 46 1 3.4723 8.2066 7.7332 47 1 5.2247 7.8982 7.7685 48 1 4.1050 6.7623 8.5591 49 1 3.5358 7.9284 4.8287 50 1 4.8139 9.8143 2.3920 51 1 2.0768 1.5101 4.5367 52 1 1.6577 0.3606 2.4070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725513967.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:18 Heat of formation + Delta-G solvation = -1.356138 kcal Electronic energy + Delta-G solvation = -29575.326756 eV Core-core repulsion = 25767.791883 eV Total energy + Delta-G solvation = -3807.534873 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.41227 -40.21636 -37.97741 -37.41681 -35.80661 -33.99386 -33.43725 -32.07162 -31.59726 -30.63458 -29.13965 -28.11285 -26.93292 -25.66108 -24.97020 -24.21315 -22.92509 -21.96490 -21.36760 -20.42359 -19.25859 -18.55143 -17.91762 -17.35509 -17.01968 -16.72000 -16.25330 -15.87614 -15.66914 -15.52911 -15.13018 -15.05884 -14.95124 -14.49426 -14.31813 -14.07486 -13.92191 -13.77234 -13.62125 -13.55441 -13.38933 -13.24443 -13.07843 -13.05910 -12.80598 -12.74178 -12.68257 -12.56779 -12.49287 -12.18568 -12.07681 -11.86539 -11.82545 -11.62720 -11.51124 -11.01849 -10.88316 -10.67024 -9.92077 -9.54780 -8.91548 -8.23354 -7.89995 -5.15136 0.22804 0.50642 1.45971 1.46666 1.54521 1.86731 2.13476 2.19865 2.57715 2.91379 3.42904 3.68529 3.82286 3.91494 3.95302 4.08071 4.15560 4.21447 4.26072 4.30609 4.41111 4.42860 4.49244 4.52330 4.54023 4.55998 4.65390 4.68405 4.71257 4.74259 4.86055 4.87654 4.92859 4.98986 5.00822 5.05040 5.09938 5.17591 5.26558 5.28063 5.31290 5.37216 5.41017 5.43133 5.54008 5.58076 5.72595 5.81286 6.32434 6.36138 6.48706 6.52205 7.24349 7.40250 8.12947 8.42960 9.32216 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.003363 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.282132 B = 8323.027209 C =10042.607479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.110 3.890 3 N -0.619 5.619 4 C 0.112 3.888 5 C -0.169 4.169 6 C 0.244 3.756 7 C -0.210 4.210 8 C -0.042 4.042 9 C -0.212 4.212 10 C 0.557 3.443 11 O -0.592 6.592 12 N -0.593 5.593 13 C 0.089 3.911 14 C 0.117 3.883 15 C 0.152 3.848 16 H 0.018 0.982 17 C -0.151 4.151 18 N -0.722 5.722 19 C -0.233 4.233 20 H 0.056 0.944 21 C -0.062 4.062 22 N -0.956 5.956 23 Si 0.958 3.042 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.280 1.280 27 C -0.023 4.023 28 C -0.205 4.205 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.060 0.940 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.056 0.944 47 H 0.035 0.965 48 H 0.066 0.934 49 H 0.379 0.621 50 H 0.250 0.750 51 H 0.127 0.873 52 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.504 -18.205 -9.367 23.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.012 4.012 3 N -0.327 5.327 4 C -0.011 4.011 5 C -0.228 4.228 6 C 0.139 3.861 7 C -0.233 4.233 8 C -0.061 4.061 9 C -0.217 4.217 10 C 0.348 3.652 11 O -0.474 6.474 12 N -0.322 5.322 13 C -0.054 4.054 14 C -0.007 4.007 15 C 0.042 3.958 16 H 0.036 0.964 17 C -0.211 4.211 18 N -0.364 5.364 19 C -0.365 4.365 20 H 0.074 0.926 21 C -0.256 4.256 22 N -0.607 5.607 23 Si 0.789 3.211 24 H -0.219 1.219 25 H -0.218 1.218 26 H -0.206 1.206 27 C -0.043 4.043 28 C -0.228 4.228 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.154 0.846 40 H 0.137 0.863 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.114 0.886 46 H 0.075 0.925 47 H 0.054 0.946 48 H 0.085 0.915 49 H 0.212 0.788 50 H 0.059 0.941 51 H 0.145 0.855 52 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.108 -18.587 -9.108 23.980 hybrid contribution 1.170 0.955 -0.328 1.545 sum -10.938 -17.632 -9.437 22.794 Atomic orbital electron populations 1.22175 0.95572 1.02835 1.01948 1.21632 0.94538 0.81213 1.03786 1.46823 1.69374 1.13900 1.02558 1.21588 0.96870 0.97950 0.84679 1.22186 0.96699 1.02355 1.01523 1.18029 0.90427 0.90843 0.86834 1.20705 1.09628 0.94723 0.98198 1.21315 0.94141 0.99220 0.91439 1.19512 1.13228 0.96907 0.92029 1.18724 0.77108 0.81486 0.87836 1.90677 1.44979 1.67717 1.44059 1.47610 1.61788 1.10615 1.12225 1.22039 0.98302 0.96459 0.88589 1.21822 0.97189 0.96775 0.84894 1.20763 0.95395 0.91174 0.88420 0.96372 1.22203 1.01123 1.00289 0.97514 1.42404 1.04743 1.54293 1.34996 1.19397 0.86099 1.21160 1.09875 0.92558 1.25254 0.99908 1.01006 0.99383 1.69750 1.28849 1.36845 1.25254 0.85368 0.81001 0.76775 0.77987 1.21883 1.21794 1.20552 1.20924 0.93210 0.91493 0.98652 1.20729 1.10466 1.01664 0.89901 0.90163 0.93509 0.92490 0.89013 0.90310 0.88539 0.90752 0.90466 0.94299 0.92082 0.84560 0.86287 0.93359 0.89806 0.90224 0.89698 0.88636 0.92473 0.94580 0.91476 0.78765 0.94063 0.85496 0.83254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.24 71.98 0.74 -0.91 16 2 C 0.11 1.22 5.86 86.38 0.51 1.73 16 3 N -0.62 -9.98 2.59 -697.33 -1.81 -11.79 16 4 C 0.11 1.48 5.86 86.38 0.51 1.99 16 5 C -0.17 -2.34 10.24 71.98 0.74 -1.60 16 6 C 0.24 5.48 6.55 38.47 0.25 5.73 16 7 C -0.21 -5.50 9.18 22.36 0.21 -5.30 16 8 C -0.04 -1.34 7.60 22.50 0.17 -1.16 16 9 C -0.21 -7.17 5.15 -20.08 -0.10 -7.27 16 10 C 0.56 22.20 7.31 86.69 0.63 22.83 16 11 O -0.59 -27.11 16.56 -4.00 -0.07 -27.18 16 12 N -0.59 -22.01 2.73 -850.56 -2.32 -24.33 16 13 C 0.09 2.97 7.54 127.77 0.96 3.93 16 14 C 0.12 4.19 5.04 86.38 0.43 4.62 16 15 C 0.15 6.52 3.20 44.99 0.14 6.66 16 16 H 0.02 0.90 8.08 -2.39 -0.02 0.88 16 17 C -0.15 -5.60 9.49 71.98 0.68 -4.92 16 18 N -0.72 -36.22 4.47 -322.95 -1.44 -37.66 16 19 C -0.23 -13.19 9.93 84.03 0.83 -12.36 16 20 H 0.06 3.25 7.83 -2.91 -0.02 3.23 16 21 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 22 N -0.96 -55.97 13.06 21.65 0.28 -55.69 16 23 Si 0.96 46.81 29.55 68.60 2.03 48.84 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 25 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 27 C -0.02 -0.66 9.64 22.50 0.22 -0.44 16 28 C -0.21 -4.66 9.18 22.36 0.21 -4.46 16 29 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 0.71 8.07 -2.39 -0.02 0.69 16 33 H 0.08 0.87 6.17 -2.39 -0.01 0.86 16 34 H 0.10 0.86 8.07 -2.39 -0.02 0.84 16 35 H 0.07 1.09 6.17 -2.38 -0.01 1.07 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.14 3.18 6.11 -2.91 -0.02 3.16 16 40 H 0.12 4.27 5.53 -2.91 -0.02 4.26 16 41 H 0.05 1.95 6.42 -2.39 -0.02 1.94 16 42 H 0.08 2.44 6.00 -2.39 -0.01 2.42 16 43 H 0.08 2.41 7.83 -2.39 -0.02 2.39 16 44 H 0.08 2.95 7.49 -2.39 -0.02 2.94 16 45 H 0.10 2.96 7.86 -2.39 -0.02 2.94 16 46 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 47 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 48 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.38 19.35 6.38 -92.71 -0.59 18.75 16 50 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 51 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 52 H 0.15 2.54 6.11 -2.91 -0.02 2.53 16 Total: -1.00 -70.61 411.56 4.58 -66.03 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: 0.31 Total: 35.80 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 7.59 Total: 5.97 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -5.29 Total: -129.46 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.07 Total: -27.18 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -70.61 4.58 -66.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725513967.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.675 kcal (2) G-P(sol) polarization free energy of solvation -70.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds