Wall clock time and date at job start Tue Mar 31 2020 18:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46493 * 120.00361 * 2 1 4 4 C 1.39675 * 119.99724 * 180.02562 * 2 1 3 5 5 C 1.38916 * 120.07342 * 359.97438 * 4 2 1 6 6 C 1.38108 * 119.92245 * 180.02562 * 5 4 2 7 7 C 1.38277 * 120.07507 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.92333 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47059 * 90.00246 * 8 7 6 10 10 C 1.50698 * 109.47407 * 179.97438 * 9 8 7 11 11 O 1.21285 * 119.99914 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00483 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00239 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47464 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47359 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47293 * 180.02562 * 15 14 13 17 17 C 1.46500 * 120.00087 * 270.00086 * 16 15 14 18 18 C 1.36941 * 119.99990 * 90.00077 * 16 15 14 19 19 H 1.07999 * 119.99509 * 20.36151 * 18 16 15 20 20 C 1.38807 * 120.00030 * 200.36825 * 18 16 15 21 21 N 1.31618 * 120.00474 * 14.98253 * 20 18 16 22 22 Si 1.86801 * 120.00036 * 194.98529 * 20 18 16 23 23 H 1.48504 * 109.46860 * 85.00019 * 22 20 18 24 24 H 1.48492 * 109.47323 * 204.99795 * 22 20 18 25 25 H 1.48495 * 109.47134 * 325.00160 * 22 20 18 26 26 C 1.38292 * 120.15114 * 0.27599 * 7 6 5 27 27 C 1.38102 * 120.07261 * 359.44813 * 26 7 6 28 28 H 1.09001 * 109.47256 * 269.99948 * 1 2 3 29 29 H 1.09001 * 109.47058 * 29.99726 * 1 2 3 30 30 H 1.08998 * 109.47185 * 149.99523 * 1 2 3 31 31 H 1.08997 * 109.47741 * 270.00183 * 3 2 1 32 32 H 1.09001 * 109.47076 * 30.00512 * 3 2 1 33 33 H 1.09003 * 109.47287 * 149.99800 * 3 2 1 34 34 H 1.07998 * 120.03430 * 0.04569 * 5 4 2 35 35 H 1.07999 * 119.96105 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.47100 * 210.00010 * 8 7 6 37 37 H 1.08997 * 109.47086 * 329.99784 * 8 7 6 38 38 H 1.09000 * 109.47382 * 299.99537 * 9 8 7 39 39 H 1.09004 * 109.47283 * 60.00063 * 9 8 7 40 40 H 0.96999 * 119.99708 * 359.97438 * 12 10 9 41 41 H 1.09003 * 109.47205 * 300.00015 * 13 12 10 42 42 H 1.09004 * 109.47328 * 60.00207 * 13 12 10 43 43 H 1.09003 * 109.47072 * 300.00280 * 14 13 12 44 44 H 1.09004 * 109.46530 * 59.99901 * 14 13 12 45 45 H 1.09003 * 109.47203 * 300.00134 * 15 14 13 46 46 H 1.09004 * 109.46920 * 60.00274 * 15 14 13 47 47 H 1.09003 * 109.46859 * 95.09616 * 17 16 15 48 48 H 1.08996 * 109.46795 * 215.09339 * 17 16 15 49 49 H 1.08995 * 109.47057 * 335.09674 * 17 16 15 50 50 H 0.96993 * 120.00275 * 180.02562 * 21 20 18 51 51 H 1.08005 * 119.96155 * 179.70440 * 26 7 6 52 52 H 1.07994 * 120.03577 * 180.27764 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1633 -1.2097 -0.0005 5 6 1.4702 -2.4136 -0.0005 6 6 2.1639 -3.6078 -0.0005 7 6 3.5466 -3.6061 -0.0011 8 6 4.3001 -4.9112 -0.0017 9 6 4.5545 -5.3525 -1.4443 10 6 5.3085 -6.6573 -1.4450 11 8 5.6128 -7.1824 -0.3949 12 7 5.6446 -7.2409 -2.6124 13 6 6.3781 -8.5090 -2.6130 14 6 6.6313 -8.9511 -4.0557 15 6 7.3967 -10.2759 -4.0563 16 7 7.6398 -10.6989 -5.4377 17 6 6.6628 -11.5451 -6.1273 18 6 8.7802 -10.3033 -6.0843 19 1 9.6371 -9.9743 -5.5152 20 6 8.8348 -10.3249 -7.4712 21 7 7.7261 -10.4355 -8.1718 22 14 10.4818 -10.1970 -8.3432 23 1 11.0966 -11.5454 -8.4399 24 1 10.2783 -9.6469 -9.7074 25 1 11.3798 -9.2974 -7.5755 26 6 4.2397 -2.4094 0.0041 27 6 3.5524 -1.2115 -0.0016 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 2.3793 1.5834 -1.0276 32 1 1.6086 2.0283 0.5139 33 1 3.1500 1.1383 0.5139 34 1 0.3903 -2.4155 -0.0009 35 1 1.6257 -4.5441 -0.0001 36 1 5.2527 -4.7810 0.5118 37 1 3.7112 -5.6709 0.5122 38 1 3.6019 -5.4828 -1.9579 39 1 5.1435 -4.5928 -1.9582 40 1 5.4009 -6.8212 -3.4523 41 1 7.3309 -8.3779 -2.1002 42 1 5.7901 -9.2691 -2.0985 43 1 5.6783 -9.0824 -4.5682 44 1 7.2191 -8.1912 -4.5707 45 1 8.3498 -10.1451 -3.5438 46 1 6.8085 -11.0356 -3.5415 47 1 5.9900 -10.9193 -6.7138 48 1 7.1842 -12.2371 -6.7886 49 1 6.0872 -12.1082 -5.3927 50 1 7.7643 -10.4510 -9.1409 51 1 5.3198 -2.4116 0.0085 52 1 4.0943 -0.2774 -0.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731252081.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:13 Heat of formation + Delta-G solvation = -11.330514 kcal Electronic energy + Delta-G solvation = -26950.575065 eV Core-core repulsion = 23142.607670 eV Total energy + Delta-G solvation = -3807.967394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.88946 -40.37444 -37.98523 -37.49487 -36.13434 -34.22789 -33.68554 -32.02261 -31.75983 -30.08147 -28.98166 -27.95525 -27.26098 -25.98488 -24.11151 -23.22242 -23.19155 -22.13325 -21.27115 -20.89510 -18.75281 -18.35188 -17.86611 -17.12542 -17.05916 -16.62189 -16.51269 -15.93961 -15.90800 -15.86528 -15.40429 -15.09358 -14.93151 -14.67597 -14.58057 -14.40257 -14.31749 -13.78685 -13.71426 -13.41867 -13.26719 -12.99831 -12.90296 -12.83657 -12.79804 -12.74608 -12.66231 -12.43957 -12.27328 -12.10944 -12.03705 -12.01388 -11.83695 -11.51772 -11.45507 -10.92092 -10.62436 -10.50462 -10.03326 -9.77939 -8.81154 -8.09932 -7.81870 -5.27430 0.58747 0.68172 1.47433 1.49308 1.56931 1.70122 2.28170 2.30484 2.53060 2.98914 3.32004 3.67830 3.78541 3.93191 4.09010 4.13642 4.17783 4.21858 4.25631 4.29883 4.43460 4.46279 4.51769 4.53903 4.62777 4.64833 4.68196 4.73064 4.80387 4.82203 4.87851 4.89539 4.90552 4.92391 4.95173 5.06323 5.22930 5.26440 5.31815 5.33055 5.43006 5.44565 5.53740 5.57067 5.65660 5.73688 5.89764 6.00836 6.33795 6.39064 6.59506 6.61605 7.16556 7.30107 7.89464 8.32055 9.21823 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018195 B = 0.001530 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.530779 B =18299.693882 C =18898.735111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.648 5.648 3 C 0.089 3.911 4 C 0.198 3.802 5 C -0.206 4.206 6 C -0.073 4.073 7 C -0.149 4.149 8 C -0.049 4.049 9 C -0.125 4.125 10 C 0.507 3.493 11 O -0.588 6.588 12 N -0.723 5.723 13 C 0.132 3.868 14 C -0.129 4.129 15 C 0.150 3.850 16 N -0.620 5.620 17 C 0.176 3.824 18 C -0.262 4.262 19 H 0.071 0.929 20 C -0.054 4.054 21 N -0.938 5.938 22 Si 0.966 3.034 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.270 1.270 26 C -0.074 4.074 27 C -0.206 4.206 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.412 0.588 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.005 0.995 48 H 0.014 0.986 49 H 0.031 0.969 50 H 0.247 0.753 51 H 0.129 0.871 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.698 23.191 17.532 33.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.360 5.360 3 C -0.054 4.054 4 C 0.096 3.904 5 C -0.228 4.228 6 C -0.092 4.092 7 C -0.151 4.151 8 C -0.087 4.087 9 C -0.164 4.164 10 C 0.296 3.704 11 O -0.469 6.469 12 N -0.375 5.375 13 C 0.007 3.993 14 C -0.169 4.169 15 C 0.023 3.977 16 N -0.343 5.343 17 C 0.031 3.969 18 C -0.392 4.392 19 H 0.089 0.911 20 C -0.249 4.249 21 N -0.585 5.585 22 Si 0.795 3.205 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.195 1.195 26 C -0.093 4.093 27 C -0.228 4.228 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.248 0.752 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.024 0.976 48 H 0.033 0.967 49 H 0.050 0.950 50 H 0.057 0.943 51 H 0.147 0.853 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.603 22.978 18.102 33.153 hybrid contribution 0.709 0.095 -1.292 1.477 sum -14.894 23.072 16.809 32.198 Atomic orbital electron populations 1.21748 0.78582 1.03447 1.01584 1.46563 1.05834 1.03229 1.80341 1.21743 0.97529 0.84524 1.01567 1.18062 0.91593 0.86444 0.94281 1.20852 1.00252 0.91033 1.10656 1.20985 0.93512 0.97931 0.96743 1.19638 0.93865 0.94498 1.07110 1.20078 0.99921 0.93746 0.94929 1.21682 1.01871 0.93112 0.99777 1.21352 0.78868 0.87298 0.82918 1.90672 1.56745 1.66722 1.32744 1.46135 1.57747 1.24307 1.09288 1.21185 0.95937 0.85259 0.96876 1.22190 1.00713 0.99808 0.94236 1.20899 0.97899 0.93723 0.85157 1.44235 1.21940 1.56695 1.11411 1.20556 0.90971 0.92087 0.93294 1.19550 0.91362 1.38748 0.89525 0.91106 1.25698 0.99871 1.01879 0.97413 1.70236 1.26667 1.56449 1.05149 0.85296 0.80048 0.77697 0.77491 1.21381 1.22188 1.19473 1.20987 1.00050 0.91424 0.96801 1.20844 0.92309 0.98990 1.10695 0.93072 0.90129 0.91216 0.93158 0.90071 0.91247 0.84939 0.85178 0.91705 0.91566 0.87070 0.87254 0.75187 0.92442 0.91901 0.92671 0.93153 0.93324 0.92236 0.97629 0.96679 0.95044 0.94341 0.85313 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 10.19 127.77 1.30 2.04 16 2 N -0.65 -8.26 3.41 -747.29 -2.55 -10.81 16 3 C 0.09 0.75 10.19 127.77 1.30 2.05 16 4 C 0.20 3.29 6.55 38.21 0.25 3.54 16 5 C -0.21 -3.35 9.21 22.40 0.21 -3.14 16 6 C -0.07 -1.24 9.69 22.25 0.22 -1.03 16 7 C -0.15 -2.70 5.14 -19.84 -0.10 -2.80 16 8 C -0.05 -0.95 4.63 29.85 0.14 -0.81 16 9 C -0.12 -2.24 5.68 29.85 0.17 -2.07 16 10 C 0.51 13.11 7.83 87.66 0.69 13.80 16 11 O -0.59 -19.99 15.98 -3.04 -0.05 -20.04 16 12 N -0.72 -18.12 5.56 -463.05 -2.57 -20.69 16 13 C 0.13 3.87 5.67 86.38 0.49 4.36 16 14 C -0.13 -4.44 5.65 30.59 0.17 -4.26 16 15 C 0.15 5.88 5.71 86.38 0.49 6.37 16 16 N -0.62 -30.89 2.93 -726.95 -2.13 -33.02 16 17 C 0.18 8.69 9.02 127.77 1.15 9.84 16 18 C -0.26 -14.32 9.68 84.03 0.81 -13.51 16 19 H 0.07 3.77 7.86 -2.91 -0.02 3.75 16 20 C -0.05 -3.00 5.06 84.86 0.43 -2.57 16 21 N -0.94 -55.28 10.67 21.65 0.23 -55.05 16 22 Si 0.97 45.06 29.58 68.60 2.03 47.09 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 24 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 C -0.07 -1.28 9.69 22.25 0.22 -1.06 16 27 C -0.21 -3.40 9.21 22.40 0.21 -3.20 16 28 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.08 0.41 8.07 -2.39 -0.02 0.39 16 30 H 0.07 0.57 6.20 -2.39 -0.01 0.55 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.08 0.41 8.07 -2.39 -0.02 0.39 16 33 H 0.07 0.57 6.20 -2.39 -0.01 0.56 16 34 H 0.13 1.71 6.14 -2.91 -0.02 1.69 16 35 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.06 1.39 8.04 -2.39 -0.02 1.37 16 37 H 0.07 1.40 8.04 -2.39 -0.02 1.38 16 38 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.41 8.54 8.47 -92.71 -0.79 7.76 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 44 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 45 H 0.05 1.87 8.03 -2.39 -0.02 1.85 16 46 H 0.06 2.09 7.86 -2.38 -0.02 2.07 16 47 H 0.01 0.29 7.40 -2.39 -0.02 0.27 16 48 H 0.01 0.79 7.21 -2.39 -0.02 0.77 16 49 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 50 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 51 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 52 H 0.13 1.75 6.14 -2.91 -0.02 1.73 16 Total: -1.00 -70.76 419.37 3.21 -67.55 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.11 Total: 17.42 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 8.14 Total: 7.54 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -7.02 Total: -119.56 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.05 Total: -20.04 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -70.76 3.21 -67.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731252081.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.223 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds