Wall clock time and date at job start Tue Mar 31 2020 18:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46503 * 109.47188 * 2 1 4 4 C 1.46503 * 120.00179 * 278.41248 * 3 2 1 5 5 C 1.52996 * 109.47018 * 270.00143 * 4 3 2 6 6 N 1.46503 * 109.47018 * 179.97438 * 5 4 3 7 7 C 1.36933 * 120.00383 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99833 * 359.97438 * 7 6 5 9 9 C 1.38807 * 120.00432 * 180.02562 * 7 6 5 10 10 N 1.31625 * 120.00050 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00189 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47200 * 59.99661 * 11 9 7 13 13 H 1.48500 * 109.47012 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46662 * 299.99280 * 11 9 7 15 15 C 1.34777 * 119.99670 * 98.41467 * 3 2 1 16 16 O 1.21599 * 119.99553 * 186.55360 * 15 3 2 17 17 C 1.47519 * 120.00516 * 6.54522 * 15 3 2 18 18 C 1.39790 * 120.06688 * 150.29945 * 17 15 3 19 19 C 1.37612 * 119.92561 * 180.30767 * 18 17 15 20 20 C 1.39220 * 120.06949 * 359.43748 * 19 18 17 21 21 N 1.39054 * 119.93036 * 180.26194 * 20 19 18 22 22 C 1.46497 * 119.99994 * 0.29972 * 21 20 19 23 23 C 1.52999 * 109.47144 * 89.99962 * 22 21 20 24 24 C 1.46494 * 119.99632 * 180.30156 * 21 20 19 25 25 C 1.53005 * 109.47379 * 90.00335 * 24 21 20 26 26 C 1.39213 * 120.13814 * 0.56310 * 20 19 18 27 27 C 1.37611 * 120.06822 * 359.72007 * 26 20 19 28 28 H 1.08996 * 109.47990 * 59.99721 * 1 2 3 29 29 H 1.09000 * 109.47418 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47281 * 299.99540 * 1 2 3 31 31 H 1.09006 * 109.47281 * 240.00460 * 2 1 3 32 32 H 1.08996 * 109.47990 * 120.00279 * 2 1 3 33 33 H 1.09006 * 109.46833 * 30.00002 * 4 3 2 34 34 H 1.08998 * 109.47182 * 149.99742 * 4 3 2 35 35 H 1.09006 * 109.47203 * 299.99632 * 5 4 3 36 36 H 1.08998 * 109.47471 * 59.99776 * 5 4 3 37 37 H 0.97003 * 119.99895 * 359.97438 * 6 5 4 38 38 H 0.96994 * 119.99878 * 180.02562 * 10 9 7 39 39 H 1.07995 * 120.03948 * 0.02562 * 18 17 15 40 40 H 1.08001 * 119.96462 * 179.70516 * 19 18 17 41 41 H 1.08995 * 109.47042 * 210.00123 * 22 21 20 42 42 H 1.09002 * 109.47101 * 329.99929 * 22 21 20 43 43 H 1.09002 * 109.47149 * 59.99996 * 23 22 21 44 44 H 1.08996 * 109.47385 * 179.97438 * 23 22 21 45 45 H 1.08995 * 109.47283 * 300.00013 * 23 22 21 46 46 H 1.09009 * 109.47099 * 209.99743 * 24 21 20 47 47 H 1.08997 * 109.47619 * 330.00000 * 24 21 20 48 48 H 1.08999 * 109.47533 * 179.97438 * 25 24 21 49 49 H 1.08999 * 109.46572 * 299.99952 * 25 24 21 50 50 H 1.08997 * 109.47019 * 59.99297 * 25 24 21 51 51 H 1.08004 * 119.96575 * 179.69777 * 26 20 19 52 52 H 1.07996 * 120.03582 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0875 2.1338 -1.2551 5 6 3.4569 1.9200 -1.9030 6 7 3.5258 2.6721 -3.1584 7 6 4.6643 2.6331 -3.9183 8 1 5.5116 2.0482 -3.5920 9 6 4.7299 3.3460 -5.1075 10 7 3.6975 4.0592 -5.5050 11 14 6.2827 3.2922 -6.1445 12 1 6.5583 1.8907 -6.5507 13 1 6.0983 4.1311 -7.3558 14 1 7.4257 3.8117 -5.3513 15 6 2.4039 1.9596 1.1547 16 8 2.6956 3.1399 1.1756 17 6 2.4720 1.1609 2.3931 18 6 3.3939 1.4920 3.3903 19 6 3.4592 0.7411 4.5416 20 6 2.6004 -0.3402 4.7189 21 7 2.6652 -1.0936 5.8858 22 6 3.6320 -0.7453 6.9299 23 6 2.9929 0.2431 7.9074 24 6 1.7667 -2.2358 6.0709 25 6 2.4296 -3.5006 5.5214 26 6 1.6812 -0.6725 3.7276 27 6 1.6149 0.0710 2.5715 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.3070 1.7848 -1.9314 34 1 1.9436 3.1948 -1.0510 35 1 4.2373 2.2690 -1.2267 36 1 3.6007 0.8590 -2.1071 37 1 2.7650 3.1977 -3.4513 38 1 3.7432 4.5571 -6.3361 39 1 4.0573 2.3335 3.2554 40 1 4.1746 0.9936 5.3104 41 1 3.9281 -1.6468 7.4662 42 1 4.5105 -0.2888 6.4739 43 1 2.1144 -0.2134 8.3634 44 1 3.7121 0.5019 8.6845 45 1 2.6969 1.1446 7.3711 46 1 1.5593 -2.3665 7.1331 47 1 0.8333 -2.0540 5.5382 48 1 1.7612 -4.3505 5.6596 49 1 2.6369 -3.3698 4.4594 50 1 3.3629 -3.6823 6.0542 51 1 1.0196 -1.5149 3.8659 52 1 0.9019 -0.1875 1.8027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732805967.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:08 Heat of formation + Delta-G solvation = 40.000304 kcal Electronic energy + Delta-G solvation = -28772.278491 eV Core-core repulsion = 24966.536967 eV Total energy + Delta-G solvation = -3805.741523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.64427 -39.32010 -36.83626 -36.23090 -34.59092 -32.97388 -32.11819 -31.18252 -30.77199 -30.20173 -28.64660 -27.24173 -24.51558 -24.26430 -23.64705 -22.96371 -22.24543 -21.52239 -20.64602 -19.36224 -17.75434 -17.24551 -17.03369 -16.53593 -15.90527 -15.41952 -15.26083 -14.89367 -14.48619 -14.35971 -14.15345 -14.06653 -13.91209 -13.53594 -13.45591 -13.22816 -13.05551 -12.88042 -12.87772 -12.59124 -12.55969 -12.45897 -12.22096 -12.17198 -11.76341 -11.52517 -11.42352 -11.22000 -11.13843 -10.90395 -10.84778 -10.67945 -10.57892 -10.09184 -10.04870 -9.70527 -9.48681 -9.03371 -8.80386 -8.39230 -7.55027 -6.86262 -5.69744 -2.98629 1.08165 1.30939 2.69066 3.01160 3.21639 3.49410 3.53104 3.54881 3.85024 4.38153 4.42985 4.63879 4.66433 4.67029 4.72990 4.78121 4.88279 4.91803 4.97057 4.99561 5.09648 5.12708 5.23911 5.26375 5.35186 5.38473 5.42880 5.43714 5.51943 5.59213 5.63874 5.70747 5.72600 5.74451 5.79696 5.88090 5.93129 6.03114 6.10267 6.15507 6.18978 6.25794 6.41057 6.58913 6.70407 6.85825 6.92624 7.02537 7.19210 7.67388 7.75895 8.46670 8.49968 9.59560 10.16573 10.51934 11.53186 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018963 B = 0.002181 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.223910 B =12834.562641 C =13211.948693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 N -0.602 5.602 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.069 0.931 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.560 3.440 16 O -0.537 6.537 17 C -0.187 4.187 18 C -0.013 4.013 19 C -0.208 4.208 20 C 0.237 3.763 21 N -0.623 5.623 22 C 0.116 3.884 23 C -0.173 4.173 24 C 0.117 3.883 25 C -0.173 4.173 26 C -0.210 4.210 27 C -0.070 4.070 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.022 0.978 36 H 0.018 0.982 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.055 0.945 51 H 0.125 0.875 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.467 -16.834 28.558 33.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.051 4.051 3 N -0.334 5.334 4 C -0.014 4.014 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.087 0.913 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 C 0.350 3.650 16 O -0.415 6.415 17 C -0.192 4.192 18 C -0.032 4.032 19 C -0.230 4.230 20 C 0.134 3.866 21 N -0.332 5.332 22 C -0.007 4.007 23 C -0.232 4.232 24 C -0.007 4.007 25 C -0.232 4.232 26 C -0.232 4.232 27 C -0.088 4.088 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.143 0.857 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.141 -16.346 28.660 33.758 hybrid contribution 0.628 0.063 -0.725 0.961 sum -6.513 -16.283 27.936 32.984 Atomic orbital electron populations 1.22301 0.96007 1.02435 1.03022 1.22403 0.94222 0.83616 1.04832 1.47744 1.64364 1.13905 1.07432 1.21673 0.98872 0.97529 0.83355 1.20907 0.93911 0.95070 0.88644 1.42207 1.17017 1.57309 1.20945 1.19167 0.92842 1.24055 1.00713 0.91284 1.24748 0.97817 1.00115 0.98413 1.69655 1.29720 1.35016 1.23894 0.86234 0.82774 0.77259 0.79729 1.21307 1.21675 1.21259 1.18275 0.76782 0.86848 0.83135 1.90794 1.49278 1.15604 1.85824 1.19667 1.03009 0.99942 0.96613 1.20966 0.94940 0.96598 0.90709 1.20603 1.03576 0.98657 1.00196 1.17998 0.92824 0.89915 0.85852 1.46579 1.39567 1.30755 1.16336 1.21430 0.91671 0.98819 0.88805 1.22230 1.01334 1.00187 0.99421 1.21422 0.92966 0.85089 1.01174 1.22236 1.01279 0.97465 1.02220 1.20612 1.03121 1.04596 0.94904 1.22152 0.97720 0.92274 0.96692 0.91363 0.91224 0.91975 0.90241 0.87602 0.90598 0.89586 0.96043 0.96448 0.78264 0.93484 0.85123 0.85623 0.90865 0.90377 0.92601 0.91720 0.92019 0.90908 0.90438 0.91733 0.91989 0.92565 0.85675 0.82477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.13 37.15 0.34 -1.31 16 2 C 0.07 0.82 5.58 -4.05 -0.02 0.80 16 3 N -0.60 -9.41 2.48 -174.92 -0.43 -9.85 16 4 C 0.11 2.00 5.58 -4.04 -0.02 1.97 16 5 C 0.14 3.19 6.58 -4.04 -0.03 3.17 16 6 N -0.73 -19.75 5.60 -59.91 -0.34 -20.09 16 7 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 10 N -0.93 -29.18 13.06 55.49 0.72 -28.46 16 11 Si 0.91 23.19 29.55 -169.99 -5.02 18.17 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 C 0.56 9.61 7.45 -12.48 -0.09 9.51 16 16 O -0.54 -11.43 16.25 5.28 0.09 -11.34 16 17 C -0.19 -2.57 5.59 -104.95 -0.59 -3.16 16 18 C -0.01 -0.16 9.58 -39.23 -0.38 -0.54 16 19 C -0.21 -2.16 9.18 -39.45 -0.36 -2.52 16 20 C 0.24 2.22 6.55 -83.86 -0.55 1.67 16 21 N -0.62 -4.34 2.59 -171.76 -0.44 -4.78 16 22 C 0.12 0.64 5.87 -4.04 -0.02 0.62 16 23 C -0.17 -0.91 10.24 37.16 0.38 -0.53 16 24 C 0.12 0.59 5.86 -4.04 -0.02 0.57 16 25 C -0.17 -0.84 10.24 37.16 0.38 -0.46 16 26 C -0.21 -1.93 9.18 -39.45 -0.36 -2.29 16 27 C -0.07 -0.75 7.47 -39.23 -0.29 -1.04 16 28 H 0.07 0.70 7.93 -51.93 -0.41 0.29 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.57 7.07 -51.93 -0.37 0.20 16 31 H 0.08 0.91 8.13 -51.93 -0.42 0.48 16 32 H 0.11 1.07 4.00 -52.24 -0.21 0.86 16 33 H 0.08 1.28 7.86 -51.93 -0.41 0.87 16 34 H 0.09 1.77 7.34 -51.93 -0.38 1.38 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.38 10.74 7.67 -40.82 -0.31 10.43 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 39 H 0.13 1.74 7.91 -52.49 -0.42 1.33 16 40 H 0.13 1.08 6.11 -52.49 -0.32 0.76 16 41 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 42 H 0.08 0.45 6.16 -51.93 -0.32 0.13 16 43 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.29 8.07 -51.92 -0.42 -0.13 16 47 H 0.08 0.38 6.17 -51.93 -0.32 0.06 16 48 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 51 H 0.13 0.87 6.11 -52.48 -0.32 0.55 16 52 H 0.16 1.44 2.53 -52.49 -0.13 1.31 16 LS Contribution 410.99 15.07 6.19 6.19 Total: -1.00 -35.48 410.99 -9.65 -45.14 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -8.53 Total: 6.24 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.89 Total: -1.22 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: -0.49 Total: -63.18 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.48 -9.65 -45.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732805967.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.138 kcal (2) G-P(sol) polarization free energy of solvation -35.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds