Wall clock time and date at job start Tue Mar 31 2020 18:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46503 * 109.47188 * 2 1 4 4 C 1.46503 * 120.00179 * 278.41248 * 3 2 1 5 5 C 1.52996 * 109.47018 * 270.00143 * 4 3 2 6 6 N 1.46503 * 109.47018 * 179.97438 * 5 4 3 7 7 C 1.36933 * 120.00383 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99833 * 359.97438 * 7 6 5 9 9 C 1.38807 * 120.00432 * 180.02562 * 7 6 5 10 10 N 1.31625 * 120.00050 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00189 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47200 * 59.99661 * 11 9 7 13 13 H 1.48500 * 109.47012 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46662 * 299.99280 * 11 9 7 15 15 C 1.34777 * 119.99670 * 98.41467 * 3 2 1 16 16 O 1.21599 * 119.99553 * 186.55360 * 15 3 2 17 17 C 1.47519 * 120.00516 * 6.54522 * 15 3 2 18 18 C 1.39790 * 120.06688 * 150.29945 * 17 15 3 19 19 C 1.37612 * 119.92561 * 180.30767 * 18 17 15 20 20 C 1.39220 * 120.06949 * 359.43748 * 19 18 17 21 21 N 1.39054 * 119.93036 * 180.26194 * 20 19 18 22 22 C 1.46497 * 119.99994 * 0.29972 * 21 20 19 23 23 C 1.52999 * 109.47144 * 89.99962 * 22 21 20 24 24 C 1.46494 * 119.99632 * 180.30156 * 21 20 19 25 25 C 1.53005 * 109.47379 * 90.00335 * 24 21 20 26 26 C 1.39213 * 120.13814 * 0.56310 * 20 19 18 27 27 C 1.37611 * 120.06822 * 359.72007 * 26 20 19 28 28 H 1.08996 * 109.47990 * 59.99721 * 1 2 3 29 29 H 1.09000 * 109.47418 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47281 * 299.99540 * 1 2 3 31 31 H 1.09006 * 109.47281 * 240.00460 * 2 1 3 32 32 H 1.08996 * 109.47990 * 120.00279 * 2 1 3 33 33 H 1.09006 * 109.46833 * 30.00002 * 4 3 2 34 34 H 1.08998 * 109.47182 * 149.99742 * 4 3 2 35 35 H 1.09006 * 109.47203 * 299.99632 * 5 4 3 36 36 H 1.08998 * 109.47471 * 59.99776 * 5 4 3 37 37 H 0.97003 * 119.99895 * 359.97438 * 6 5 4 38 38 H 0.96994 * 119.99878 * 180.02562 * 10 9 7 39 39 H 1.07995 * 120.03948 * 0.02562 * 18 17 15 40 40 H 1.08001 * 119.96462 * 179.70516 * 19 18 17 41 41 H 1.08995 * 109.47042 * 210.00123 * 22 21 20 42 42 H 1.09002 * 109.47101 * 329.99929 * 22 21 20 43 43 H 1.09002 * 109.47149 * 59.99996 * 23 22 21 44 44 H 1.08996 * 109.47385 * 179.97438 * 23 22 21 45 45 H 1.08995 * 109.47283 * 300.00013 * 23 22 21 46 46 H 1.09009 * 109.47099 * 209.99743 * 24 21 20 47 47 H 1.08997 * 109.47619 * 330.00000 * 24 21 20 48 48 H 1.08999 * 109.47533 * 179.97438 * 25 24 21 49 49 H 1.08999 * 109.46572 * 299.99952 * 25 24 21 50 50 H 1.08997 * 109.47019 * 59.99297 * 25 24 21 51 51 H 1.08004 * 119.96575 * 179.69777 * 26 20 19 52 52 H 1.07996 * 120.03582 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0875 2.1338 -1.2551 5 6 3.4569 1.9200 -1.9030 6 7 3.5258 2.6721 -3.1584 7 6 4.6643 2.6331 -3.9183 8 1 5.5116 2.0482 -3.5920 9 6 4.7299 3.3460 -5.1075 10 7 3.6975 4.0592 -5.5050 11 14 6.2827 3.2922 -6.1445 12 1 6.5583 1.8907 -6.5507 13 1 6.0983 4.1311 -7.3558 14 1 7.4257 3.8117 -5.3513 15 6 2.4039 1.9596 1.1547 16 8 2.6956 3.1399 1.1756 17 6 2.4720 1.1609 2.3931 18 6 3.3939 1.4920 3.3903 19 6 3.4592 0.7411 4.5416 20 6 2.6004 -0.3402 4.7189 21 7 2.6652 -1.0936 5.8858 22 6 3.6320 -0.7453 6.9299 23 6 2.9929 0.2431 7.9074 24 6 1.7667 -2.2358 6.0709 25 6 2.4296 -3.5006 5.5214 26 6 1.6812 -0.6725 3.7276 27 6 1.6149 0.0710 2.5715 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.3070 1.7848 -1.9314 34 1 1.9436 3.1948 -1.0510 35 1 4.2373 2.2690 -1.2267 36 1 3.6007 0.8590 -2.1071 37 1 2.7650 3.1977 -3.4513 38 1 3.7432 4.5571 -6.3361 39 1 4.0573 2.3335 3.2554 40 1 4.1746 0.9936 5.3104 41 1 3.9281 -1.6468 7.4662 42 1 4.5105 -0.2888 6.4739 43 1 2.1144 -0.2134 8.3634 44 1 3.7121 0.5019 8.6845 45 1 2.6969 1.1446 7.3711 46 1 1.5593 -2.3665 7.1331 47 1 0.8333 -2.0540 5.5382 48 1 1.7612 -4.3505 5.6596 49 1 2.6369 -3.3698 4.4594 50 1 3.3629 -3.6823 6.0542 51 1 1.0196 -1.5149 3.8659 52 1 0.9019 -0.1875 1.8027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732805967.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:07 Heat of formation + Delta-G solvation = 18.748795 kcal Electronic energy + Delta-G solvation = -28773.200025 eV Core-core repulsion = 24966.536967 eV Total energy + Delta-G solvation = -3806.663058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.67990 -40.23185 -37.66320 -37.62891 -36.41720 -33.85822 -33.40028 -32.21804 -31.92444 -31.15668 -29.72439 -28.54450 -25.90614 -25.01969 -24.75301 -24.07803 -23.25541 -22.86406 -21.41340 -20.53280 -19.22569 -18.53504 -18.15778 -17.50200 -16.88877 -16.70084 -16.33558 -16.20548 -15.60204 -15.54275 -15.26618 -15.14144 -14.96432 -14.74226 -14.61361 -14.49942 -14.22200 -13.90968 -13.57590 -13.45329 -13.35018 -13.15106 -13.05420 -12.90332 -12.79770 -12.76511 -12.66610 -12.53294 -12.29805 -12.18147 -12.10433 -11.93746 -11.87826 -11.83781 -11.43114 -10.99545 -10.96463 -10.67363 -9.89266 -9.72293 -9.08823 -8.25073 -7.98658 -5.30114 0.14770 0.47985 1.44709 1.49591 1.55627 1.79931 2.01192 2.14338 2.55070 2.91796 3.33736 3.58973 3.78832 3.90021 3.96655 4.05792 4.12535 4.15733 4.17689 4.22906 4.27267 4.37926 4.40998 4.48779 4.51587 4.52677 4.54115 4.56616 4.58101 4.69824 4.86069 4.86915 4.90212 4.94136 5.00157 5.02753 5.03339 5.06832 5.12844 5.26874 5.31068 5.35899 5.39481 5.41259 5.43015 5.50641 5.60101 5.78508 6.22246 6.34907 6.43463 6.51339 7.18096 7.28205 7.99047 8.25830 9.24460 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018963 B = 0.002181 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.223910 B =12834.562641 C =13211.948693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.065 3.935 3 N -0.599 5.599 4 C 0.123 3.877 5 C 0.151 3.849 6 N -0.742 5.742 7 C -0.253 4.253 8 H 0.072 0.928 9 C -0.074 4.074 10 N -0.967 5.967 11 Si 0.981 3.019 12 H -0.273 1.273 13 H -0.290 1.290 14 H -0.280 1.280 15 C 0.553 3.447 16 O -0.596 6.596 17 C -0.217 4.217 18 C -0.029 4.029 19 C -0.211 4.211 20 C 0.244 3.756 21 N -0.617 5.617 22 C 0.110 3.890 23 C -0.168 4.168 24 C 0.110 3.890 25 C -0.169 4.169 26 C -0.206 4.206 27 C -0.061 4.061 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.058 0.942 35 H -0.004 1.004 36 H 0.031 0.969 37 H 0.376 0.624 38 H 0.254 0.746 39 H 0.110 0.890 40 H 0.140 0.860 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.042 0.958 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.048 0.952 50 H 0.053 0.947 51 H 0.156 0.844 52 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.041 -20.288 30.351 37.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.056 4.056 3 N -0.331 5.331 4 C 0.000 4.000 5 C 0.023 3.977 6 N -0.385 5.385 7 C -0.385 4.385 8 H 0.090 0.910 9 C -0.266 4.266 10 N -0.617 5.617 11 Si 0.808 3.192 12 H -0.198 1.198 13 H -0.216 1.216 14 H -0.207 1.207 15 C 0.345 3.655 16 O -0.478 6.478 17 C -0.222 4.222 18 C -0.049 4.049 19 C -0.233 4.233 20 C 0.138 3.862 21 N -0.324 5.324 22 C -0.013 4.013 23 C -0.226 4.226 24 C -0.012 4.012 25 C -0.227 4.227 26 C -0.228 4.228 27 C -0.080 4.080 28 H 0.075 0.925 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.014 0.986 36 H 0.048 0.952 37 H 0.208 0.792 38 H 0.063 0.937 39 H 0.128 0.872 40 H 0.157 0.843 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.109 0.891 47 H 0.102 0.898 48 H 0.098 0.902 49 H 0.067 0.933 50 H 0.072 0.928 51 H 0.173 0.827 52 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.726 -19.888 30.511 37.231 hybrid contribution 0.806 1.024 -1.080 1.693 sum -6.920 -18.864 29.431 35.636 Atomic orbital electron populations 1.22277 0.93853 1.04544 1.02554 1.22759 0.95939 0.81020 1.05855 1.47832 1.63999 1.15353 1.05874 1.21297 0.97111 0.96750 0.84892 1.20926 0.95437 0.94731 0.86618 1.42378 1.16256 1.57752 1.22143 1.19554 0.93643 1.24054 1.01251 0.90984 1.25667 1.01282 0.99926 0.99760 1.69819 1.31803 1.35853 1.24263 0.85118 0.78642 0.77758 0.77649 1.19826 1.21606 1.20670 1.18949 0.75581 0.86512 0.84472 1.90745 1.52004 1.18186 1.86837 1.19471 1.05551 1.01653 0.95528 1.20922 0.95228 0.96872 0.91888 1.20683 1.04293 0.98837 0.99516 1.18145 0.91951 0.89356 0.86713 1.46858 1.39569 1.30502 1.15515 1.21599 0.91266 0.99832 0.88580 1.22175 1.01813 0.99231 0.99425 1.21651 0.92723 0.84260 1.02544 1.22191 1.01528 0.97811 1.01215 1.20904 1.03088 1.04858 0.93924 1.22254 0.96941 0.91036 0.97726 0.92499 0.87738 0.91832 0.89927 0.85887 0.88612 0.92321 0.98592 0.95159 0.79217 0.93724 0.87189 0.84273 0.88854 0.90739 0.92173 0.90506 0.93881 0.89129 0.89753 0.90191 0.93267 0.92829 0.82663 0.80860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.13 71.98 0.66 -2.15 16 2 C 0.07 1.39 5.58 86.38 0.48 1.87 16 3 N -0.60 -19.24 2.48 -825.58 -2.05 -21.29 16 4 C 0.12 4.74 5.58 86.38 0.48 5.23 16 5 C 0.15 6.97 6.58 86.38 0.57 7.54 16 6 N -0.74 -41.43 5.60 -343.45 -1.92 -43.35 16 7 C -0.25 -15.22 9.99 84.03 0.84 -14.38 16 8 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 9 C -0.07 -4.46 5.50 84.86 0.47 -3.99 16 10 N -0.97 -61.50 13.06 21.65 0.28 -61.22 16 11 Si 0.98 47.99 29.55 68.60 2.03 50.01 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 14 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 15 C 0.55 20.07 7.45 86.69 0.65 20.72 16 16 O -0.60 -27.56 16.25 -4.03 -0.07 -27.63 16 17 C -0.22 -6.12 5.59 -20.08 -0.11 -6.23 16 18 C -0.03 -0.79 9.58 22.50 0.22 -0.58 16 19 C -0.21 -4.30 9.18 22.36 0.21 -4.09 16 20 C 0.24 4.05 6.55 38.47 0.25 4.30 16 21 N -0.62 -6.77 2.59 -697.32 -1.81 -8.58 16 22 C 0.11 0.92 5.87 86.38 0.51 1.43 16 23 C -0.17 -1.40 10.24 71.98 0.74 -0.67 16 24 C 0.11 0.70 5.86 86.38 0.51 1.21 16 25 C -0.17 -1.04 10.24 71.98 0.74 -0.30 16 26 C -0.21 -3.19 9.18 22.36 0.21 -2.99 16 27 C -0.06 -1.21 7.47 22.50 0.17 -1.04 16 28 H 0.06 1.07 7.93 -2.39 -0.02 1.05 16 29 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.03 7.07 -2.38 -0.02 1.01 16 31 H 0.08 1.74 8.13 -2.38 -0.02 1.72 16 32 H 0.12 2.24 4.00 -2.68 -0.01 2.23 16 33 H 0.10 3.28 7.86 -2.38 -0.02 3.26 16 34 H 0.06 2.59 7.34 -2.39 -0.02 2.57 16 35 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 36 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.38 21.86 7.67 -92.71 -0.71 21.15 16 38 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.11 3.31 7.91 -2.91 -0.02 3.29 16 40 H 0.14 2.33 6.11 -2.91 -0.02 2.31 16 41 H 0.09 0.46 8.07 -2.39 -0.02 0.45 16 42 H 0.07 0.71 6.16 -2.39 -0.01 0.69 16 43 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.09 0.32 8.07 -2.38 -0.02 0.30 16 47 H 0.08 0.46 6.17 -2.39 -0.01 0.44 16 48 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 49 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 51 H 0.16 1.47 6.11 -2.91 -0.02 1.45 16 52 H 0.17 2.74 2.53 -2.91 -0.01 2.73 16 Total: -1.00 -80.32 410.99 4.24 -76.08 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.21 Total: 30.08 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 7.56 Total: 5.89 kcal Atomic # 7 Polarization: -128.95 SS G_CDS: -5.49 Total: -134.44 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.07 Total: -27.63 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.01 kcal Total: -80.32 4.24 -76.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732805967.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.831 kcal (2) G-P(sol) polarization free energy of solvation -80.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds