Wall clock time and date at job start Tue Mar 31 2020 18:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46496 * 109.46932 * 2 1 4 4 C 1.36455 * 124.85017 * 265.02360 * 3 2 1 5 5 C 1.34484 * 108.85548 * 179.97438 * 4 3 2 6 6 C 1.46691 * 106.33428 * 0.02562 * 5 4 3 7 7 C 1.47258 * 126.94232 * 179.97438 * 6 5 4 8 8 O 1.21630 * 120.00020 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99840 * 359.97438 * 7 6 5 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47128 * 35.00470 * 10 9 7 12 12 C 1.53005 * 109.47207 * 275.00486 * 10 9 7 13 13 C 1.53001 * 109.47141 * 299.99710 * 12 10 9 14 14 C 1.52994 * 109.47342 * 300.00376 * 13 12 10 15 15 C 1.53005 * 109.47309 * 59.99728 * 14 13 12 16 16 C 1.52996 * 109.47103 * 299.99866 * 15 14 13 17 17 H 1.09001 * 109.47197 * 300.00065 * 16 15 14 18 18 C 1.52996 * 109.47010 * 179.97438 * 16 15 14 19 19 N 1.46501 * 109.47008 * 65.00383 * 18 16 15 20 20 C 1.36946 * 119.99626 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00099 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99502 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00047 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99641 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47272 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46993 * 119.99866 * 24 22 20 27 27 H 1.48500 * 109.47015 * 239.99973 * 24 22 20 28 28 C 1.34656 * 124.85135 * 84.99951 * 3 2 1 29 29 C 1.50696 * 125.80062 * 0.04514 * 28 3 2 30 30 H 1.09007 * 109.46625 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46983 * 299.99987 * 1 2 3 32 32 H 1.09001 * 109.47310 * 60.00379 * 1 2 3 33 33 H 1.09003 * 109.46720 * 239.99795 * 2 1 3 34 34 H 1.08994 * 109.46800 * 120.00031 * 2 1 3 35 35 H 1.07998 * 125.56871 * 359.71458 * 4 3 2 36 36 H 1.07998 * 126.83004 * 179.97438 * 5 4 3 37 37 H 0.96996 * 120.00046 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.47214 * 60.00502 * 12 10 9 39 39 H 1.09001 * 109.47147 * 180.02562 * 12 10 9 40 40 H 1.08997 * 109.47286 * 180.02562 * 13 12 10 41 41 H 1.09001 * 109.46746 * 60.00188 * 13 12 10 42 42 H 1.09001 * 109.47047 * 299.99628 * 14 13 12 43 43 H 1.09002 * 109.47124 * 179.97438 * 14 13 12 44 44 H 1.09000 * 109.46960 * 180.02562 * 15 14 13 45 45 H 1.09001 * 109.47147 * 59.99962 * 15 14 13 46 46 H 1.09002 * 109.46967 * 185.00309 * 18 16 15 47 47 H 1.08997 * 109.47467 * 304.99969 * 18 16 15 48 48 H 0.96998 * 120.00434 * 359.97438 * 19 18 16 49 49 H 0.96996 * 119.99414 * 180.02562 * 23 22 20 50 50 H 1.08996 * 109.47551 * 89.99888 * 29 28 3 51 51 H 1.09007 * 109.46544 * 209.99929 * 29 28 3 52 52 H 1.08996 * 109.47193 * 329.99274 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3698 2.0840 -1.1156 5 6 2.7699 3.3137 -0.7465 6 6 2.6530 3.3643 0.7149 7 6 2.9753 4.5042 1.5897 8 8 2.8306 4.4070 2.7934 9 7 3.4317 5.6548 1.0565 10 6 3.7518 6.7890 1.9267 11 1 4.1619 6.4210 2.8672 12 6 2.4803 7.5933 2.2048 13 6 1.9047 8.1099 0.8847 14 6 2.9348 9.0067 0.1953 15 6 4.2064 8.2024 -0.0828 16 6 4.7821 7.6859 1.2373 17 1 5.0202 8.5299 1.8847 18 6 6.0532 6.8812 0.9591 19 7 7.0815 7.7674 0.4083 20 6 8.3131 7.2664 0.0803 21 1 8.5264 6.2180 0.2281 22 6 9.2872 8.1060 -0.4420 23 7 9.0270 9.3836 -0.6226 24 14 10.9674 7.4228 -0.8888 25 1 11.0054 5.9683 -0.5915 26 1 11.2211 7.6395 -2.3357 27 1 12.0116 8.1174 -0.0936 28 6 2.1840 2.1388 1.1008 29 6 1.9017 1.7091 2.5174 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.3365 1.7119 -2.1289 36 1 3.1103 4.1061 -1.3966 37 1 3.5475 5.7321 0.0966 38 1 1.7464 6.9544 2.6959 39 1 2.7185 8.4374 2.8519 40 1 0.9991 8.6833 1.0828 41 1 1.6665 7.2660 0.2372 42 1 3.1730 9.8506 0.8427 43 1 2.5249 9.3744 -0.7454 44 1 4.9405 8.8415 -0.5735 45 1 3.9682 7.3585 -0.7303 46 1 6.4139 6.4392 1.8879 47 1 5.8330 6.0904 0.2421 48 1 6.8901 8.7091 0.2760 49 1 9.7077 9.9702 -0.9879 50 1 2.7990 1.2648 2.9481 51 1 1.6061 2.5763 3.1080 52 1 1.0955 0.9755 2.5207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733075995.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:36 Heat of formation + Delta-G solvation = -2.516038 kcal Electronic energy + Delta-G solvation = -29611.970138 eV Core-core repulsion = 25804.384968 eV Total energy + Delta-G solvation = -3807.585170 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.50727 -39.83776 -37.74057 -34.56049 -34.35265 -33.37122 -31.83747 -31.63861 -30.18017 -29.54370 -28.92500 -26.42319 -25.14220 -24.11068 -22.92183 -22.45900 -21.87808 -20.65521 -20.21569 -19.05514 -18.63881 -17.57681 -17.03780 -16.04597 -15.57947 -15.36589 -15.06943 -14.92451 -14.57265 -14.44149 -13.93657 -13.70805 -13.62392 -13.41383 -13.23274 -13.11083 -13.04166 -12.96001 -12.84647 -12.55405 -12.44560 -12.09562 -11.93596 -11.83875 -11.74132 -11.54534 -11.51863 -11.29218 -10.83837 -10.82779 -10.62662 -10.23141 -10.10482 -9.87871 -9.73669 -9.56173 -9.51091 -8.83444 -8.76470 -8.57117 -8.17409 -6.84312 -5.71274 -2.98720 1.79133 2.38073 2.61226 3.46731 3.52698 3.54847 3.66021 3.77794 4.26021 4.52713 4.58723 4.63386 4.76897 4.81643 4.95313 5.02686 5.05416 5.07509 5.13180 5.16422 5.31725 5.40021 5.46543 5.49392 5.54779 5.62132 5.64130 5.73863 5.76048 5.81073 5.85576 5.88605 5.91137 5.96146 6.12319 6.21110 6.26414 6.29913 6.35222 6.41187 6.51013 6.60857 6.72548 6.78411 6.84335 6.93079 6.97886 7.03781 7.14108 7.76863 7.93154 8.48341 8.63841 9.59475 10.18367 10.53350 11.51869 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011091 B = 0.003088 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.889587 B = 9065.087853 C =10600.452593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.096 3.904 3 N -0.443 5.443 4 C -0.020 4.020 5 C -0.164 4.164 6 C -0.233 4.233 7 C 0.592 3.408 8 O -0.559 6.559 9 N -0.710 5.710 10 C 0.157 3.843 11 H 0.086 0.914 12 C -0.127 4.127 13 C -0.115 4.115 14 C -0.120 4.120 15 C -0.110 4.110 16 C -0.101 4.101 17 H 0.083 0.917 18 C 0.160 3.840 19 N -0.731 5.731 20 C -0.234 4.234 21 H 0.069 0.931 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.103 3.897 29 C -0.093 4.093 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.164 0.836 36 H 0.145 0.855 37 H 0.400 0.600 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.017 0.983 47 H 0.019 0.981 48 H 0.383 0.617 49 H 0.253 0.747 50 H 0.075 0.925 51 H 0.101 0.899 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.528 -15.376 0.682 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.025 4.025 3 N -0.120 5.120 4 C -0.145 4.145 5 C -0.188 4.188 6 C -0.242 4.242 7 C 0.381 3.619 8 O -0.440 6.440 9 N -0.361 5.361 10 C 0.052 3.948 11 H 0.104 0.896 12 C -0.166 4.166 13 C -0.153 4.153 14 C -0.158 4.158 15 C -0.147 4.147 16 C -0.120 4.120 17 H 0.102 0.898 18 C 0.033 3.967 19 N -0.376 5.376 20 C -0.365 4.365 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.584 5.584 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.219 1.219 28 C -0.013 4.013 29 C -0.150 4.150 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.182 0.818 36 H 0.162 0.838 37 H 0.236 0.764 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.035 0.965 47 H 0.037 0.963 48 H 0.217 0.783 49 H 0.063 0.937 50 H 0.093 0.907 51 H 0.119 0.881 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.592 -15.889 1.477 26.848 hybrid contribution 1.076 -0.005 -1.050 1.504 sum -20.516 -15.894 0.427 25.956 Atomic orbital electron populations 1.22190 0.94307 1.02992 1.03381 1.21864 0.95574 0.80619 1.04478 1.43706 1.50677 1.11763 1.05903 1.21646 1.08397 0.93311 0.91190 1.22043 1.06044 0.97303 0.93414 1.20174 1.15632 0.94979 0.93455 1.17310 0.76142 0.81618 0.86858 1.90695 1.54940 1.83379 1.14943 1.45859 1.66620 1.12659 1.10960 1.20900 0.94242 0.85507 0.94170 0.89575 1.21896 0.97585 0.99583 0.97516 1.21484 0.97812 0.99144 0.96846 1.21581 0.95774 0.98336 1.00074 1.21523 0.96680 0.99660 0.96874 1.21615 0.94804 0.98349 0.97263 0.89826 1.20641 0.87311 0.92704 0.96082 1.42387 1.10516 1.08314 1.76335 1.19283 0.89354 0.93847 1.34012 0.91278 1.24715 0.98392 0.95634 1.02404 1.69668 1.33856 1.03275 1.51574 0.86138 0.84596 0.77940 0.77693 1.20612 1.21957 1.21947 1.20264 1.01185 0.90621 0.89272 1.20555 1.01571 1.03139 0.89749 0.90718 0.91709 0.91740 0.88970 0.89275 0.81823 0.83757 0.76442 0.91795 0.91266 0.92689 0.92198 0.92000 0.92397 0.90402 0.92703 0.96493 0.96270 0.78254 0.93672 0.90654 0.88053 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.24 37.16 0.38 -0.45 16 2 C 0.10 0.56 6.21 -4.04 -0.03 0.53 16 3 N -0.44 -4.23 2.69 -112.52 -0.30 -4.53 16 4 C -0.02 -0.19 11.33 -16.82 -0.19 -0.39 16 5 C -0.16 -1.94 10.56 -37.50 -0.40 -2.33 16 6 C -0.23 -3.22 6.29 -103.35 -0.65 -3.87 16 7 C 0.59 9.27 7.77 -12.59 -0.10 9.17 16 8 O -0.56 -10.01 14.48 5.25 0.08 -9.93 16 9 N -0.71 -10.26 3.61 -54.93 -0.20 -10.46 16 10 C 0.16 2.34 2.23 -67.93 -0.15 2.19 16 11 H 0.09 1.44 7.58 -51.93 -0.39 1.04 16 12 C -0.13 -1.66 5.60 -26.73 -0.15 -1.81 16 13 C -0.12 -1.38 5.77 -26.73 -0.15 -1.53 16 14 C -0.12 -1.53 5.92 -26.73 -0.16 -1.68 16 15 C -0.11 -1.67 4.90 -26.73 -0.13 -1.80 16 16 C -0.10 -1.66 2.02 -90.62 -0.18 -1.84 16 17 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 18 C 0.16 3.32 5.42 -4.04 -0.02 3.29 16 19 N -0.73 -18.65 5.33 -59.91 -0.32 -18.97 16 20 C -0.23 -6.66 9.99 -15.05 -0.15 -6.81 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 24 Si 0.90 22.82 29.55 -169.99 -5.02 17.79 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 28 C 0.10 1.23 6.89 -81.89 -0.56 0.67 16 29 C -0.09 -0.96 9.31 36.00 0.34 -0.62 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.38 7.52 -51.93 -0.39 -0.01 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.38 8.11 -51.93 -0.42 -0.04 16 34 H 0.09 0.44 7.74 -51.93 -0.40 0.04 16 35 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.14 1.53 7.70 -52.49 -0.40 1.13 16 37 H 0.40 5.43 5.79 -40.82 -0.24 5.19 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.73 7.60 -51.93 -0.39 0.33 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.39 7.18 -51.93 -0.37 1.01 16 45 H 0.05 0.79 6.51 -51.93 -0.34 0.46 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.02 0.40 7.61 -51.93 -0.40 0.01 16 48 H 0.38 10.17 6.85 -40.82 -0.28 9.89 16 49 H 0.25 7.46 8.31 -40.82 -0.34 7.13 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.10 1.24 6.47 -51.92 -0.34 0.91 16 52 H 0.06 0.45 7.06 -51.93 -0.37 0.08 16 LS Contribution 405.31 15.07 6.11 6.11 Total: -1.00 -33.66 405.31 -10.27 -43.92 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -8.93 Total: 11.66 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -2.40 Total: -7.84 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.10 Total: -61.72 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.66 -10.27 -43.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733075995.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.408 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds