Wall clock time and date at job start Tue Mar 31 2020 18:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46496 * 109.46932 * 2 1 4 4 C 1.36455 * 124.85017 * 265.02360 * 3 2 1 5 5 C 1.34484 * 108.85548 * 179.97438 * 4 3 2 6 6 C 1.46691 * 106.33428 * 0.02562 * 5 4 3 7 7 C 1.47258 * 126.94232 * 179.97438 * 6 5 4 8 8 O 1.21630 * 120.00020 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99840 * 359.97438 * 7 6 5 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47128 * 35.00470 * 10 9 7 12 12 C 1.53005 * 109.47207 * 275.00486 * 10 9 7 13 13 C 1.53001 * 109.47141 * 299.99710 * 12 10 9 14 14 C 1.52994 * 109.47342 * 300.00376 * 13 12 10 15 15 C 1.53005 * 109.47309 * 59.99728 * 14 13 12 16 16 C 1.52996 * 109.47103 * 299.99866 * 15 14 13 17 17 H 1.09001 * 109.47197 * 300.00065 * 16 15 14 18 18 C 1.52996 * 109.47010 * 179.97438 * 16 15 14 19 19 N 1.46501 * 109.47008 * 65.00383 * 18 16 15 20 20 C 1.36946 * 119.99626 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00099 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99502 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00047 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99641 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47272 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46993 * 119.99866 * 24 22 20 27 27 H 1.48500 * 109.47015 * 239.99973 * 24 22 20 28 28 C 1.34656 * 124.85135 * 84.99951 * 3 2 1 29 29 C 1.50696 * 125.80062 * 0.04514 * 28 3 2 30 30 H 1.09007 * 109.46625 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46983 * 299.99987 * 1 2 3 32 32 H 1.09001 * 109.47310 * 60.00379 * 1 2 3 33 33 H 1.09003 * 109.46720 * 239.99795 * 2 1 3 34 34 H 1.08994 * 109.46800 * 120.00031 * 2 1 3 35 35 H 1.07998 * 125.56871 * 359.71458 * 4 3 2 36 36 H 1.07998 * 126.83004 * 179.97438 * 5 4 3 37 37 H 0.96996 * 120.00046 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.47214 * 60.00502 * 12 10 9 39 39 H 1.09001 * 109.47147 * 180.02562 * 12 10 9 40 40 H 1.08997 * 109.47286 * 180.02562 * 13 12 10 41 41 H 1.09001 * 109.46746 * 60.00188 * 13 12 10 42 42 H 1.09001 * 109.47047 * 299.99628 * 14 13 12 43 43 H 1.09002 * 109.47124 * 179.97438 * 14 13 12 44 44 H 1.09000 * 109.46960 * 180.02562 * 15 14 13 45 45 H 1.09001 * 109.47147 * 59.99962 * 15 14 13 46 46 H 1.09002 * 109.46967 * 185.00309 * 18 16 15 47 47 H 1.08997 * 109.47467 * 304.99969 * 18 16 15 48 48 H 0.96998 * 120.00434 * 359.97438 * 19 18 16 49 49 H 0.96996 * 119.99414 * 180.02562 * 23 22 20 50 50 H 1.08996 * 109.47551 * 89.99888 * 29 28 3 51 51 H 1.09007 * 109.46544 * 209.99929 * 29 28 3 52 52 H 1.08996 * 109.47193 * 329.99274 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3698 2.0840 -1.1156 5 6 2.7699 3.3137 -0.7465 6 6 2.6530 3.3643 0.7149 7 6 2.9753 4.5042 1.5897 8 8 2.8306 4.4070 2.7934 9 7 3.4317 5.6548 1.0565 10 6 3.7518 6.7890 1.9267 11 1 4.1619 6.4210 2.8672 12 6 2.4803 7.5933 2.2048 13 6 1.9047 8.1099 0.8847 14 6 2.9348 9.0067 0.1953 15 6 4.2064 8.2024 -0.0828 16 6 4.7821 7.6859 1.2373 17 1 5.0202 8.5299 1.8847 18 6 6.0532 6.8812 0.9591 19 7 7.0815 7.7674 0.4083 20 6 8.3131 7.2664 0.0803 21 1 8.5264 6.2180 0.2281 22 6 9.2872 8.1060 -0.4420 23 7 9.0270 9.3836 -0.6226 24 14 10.9674 7.4228 -0.8888 25 1 11.0054 5.9683 -0.5915 26 1 11.2211 7.6395 -2.3357 27 1 12.0116 8.1174 -0.0936 28 6 2.1840 2.1388 1.1008 29 6 1.9017 1.7091 2.5174 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.3365 1.7119 -2.1289 36 1 3.1103 4.1061 -1.3966 37 1 3.5475 5.7321 0.0966 38 1 1.7464 6.9544 2.6959 39 1 2.7185 8.4374 2.8519 40 1 0.9991 8.6833 1.0828 41 1 1.6665 7.2660 0.2372 42 1 3.1730 9.8506 0.8427 43 1 2.5249 9.3744 -0.7454 44 1 4.9405 8.8415 -0.5735 45 1 3.9682 7.3585 -0.7303 46 1 6.4139 6.4392 1.8879 47 1 5.8330 6.0904 0.2421 48 1 6.8901 8.7091 0.2760 49 1 9.7077 9.9702 -0.9879 50 1 2.7990 1.2648 2.9481 51 1 1.6061 2.5763 3.1080 52 1 1.0955 0.9755 2.5207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733075995.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:34 Heat of formation + Delta-G solvation = -21.515657 kcal Electronic energy + Delta-G solvation = -29612.794023 eV Core-core repulsion = 25804.384968 eV Total energy + Delta-G solvation = -3808.409055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -42.33828 -41.05002 -38.99421 -36.44404 -35.01896 -34.48282 -33.69831 -32.49158 -31.24059 -31.14777 -29.85100 -27.37062 -26.84050 -24.83552 -24.67443 -23.47095 -22.96162 -21.99945 -21.30083 -20.03744 -19.78144 -19.14857 -18.37696 -16.97242 -16.83977 -16.60554 -16.33305 -16.02723 -15.76603 -15.57999 -15.22852 -15.05501 -14.95628 -14.69384 -14.53195 -14.21701 -14.05573 -13.96230 -13.75618 -13.61596 -13.39321 -13.07593 -13.01155 -12.94733 -12.83313 -12.71668 -12.67514 -12.56352 -12.38716 -12.11070 -12.08404 -11.90893 -11.84544 -11.39471 -11.15668 -11.02376 -10.84440 -10.75251 -9.93773 -9.47985 -9.06190 -8.98185 -7.95041 -5.23255 0.80874 1.46367 1.47258 1.54694 1.57472 1.89577 2.53317 2.55575 2.66319 3.38059 3.61640 3.82068 3.82988 3.84275 3.87722 4.04953 4.10283 4.13539 4.21020 4.27215 4.36270 4.41415 4.44967 4.50189 4.54102 4.59025 4.61006 4.70521 4.71162 4.77146 4.84029 4.89499 4.93596 5.01198 5.04077 5.08427 5.11838 5.18972 5.25271 5.29242 5.29678 5.32813 5.39169 5.47883 5.51775 5.55323 5.71877 5.84286 6.15662 6.27618 6.41186 6.76575 7.34284 7.45186 8.09200 8.35112 9.28488 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011091 B = 0.003088 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.889587 B = 9065.087853 C =10600.452593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.088 3.912 3 N -0.437 5.437 4 C -0.008 4.008 5 C -0.187 4.187 6 C -0.270 4.270 7 C 0.586 3.414 8 O -0.590 6.590 9 N -0.705 5.705 10 C 0.163 3.837 11 H 0.064 0.936 12 C -0.120 4.120 13 C -0.107 4.107 14 C -0.113 4.113 15 C -0.104 4.104 16 C -0.087 4.087 17 H 0.078 0.922 18 C 0.164 3.836 19 N -0.739 5.739 20 C -0.244 4.244 21 H 0.068 0.932 22 C -0.072 4.072 23 N -0.966 5.966 24 Si 0.972 3.028 25 H -0.270 1.270 26 H -0.290 1.290 27 H -0.293 1.293 28 C 0.097 3.903 29 C -0.088 4.088 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.198 0.802 36 H 0.149 0.851 37 H 0.404 0.596 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.061 0.939 46 H 0.001 0.999 47 H 0.020 0.980 48 H 0.377 0.623 49 H 0.252 0.748 50 H 0.075 0.925 51 H 0.077 0.923 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.857 -17.238 -0.514 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.032 4.032 3 N -0.113 5.113 4 C -0.135 4.135 5 C -0.210 4.210 6 C -0.280 4.280 7 C 0.377 3.623 8 O -0.474 6.474 9 N -0.356 5.356 10 C 0.058 3.942 11 H 0.082 0.918 12 C -0.159 4.159 13 C -0.145 4.145 14 C -0.150 4.150 15 C -0.141 4.141 16 C -0.106 4.106 17 H 0.096 0.904 18 C 0.037 3.963 19 N -0.382 5.382 20 C -0.376 4.376 21 H 0.086 0.914 22 C -0.265 4.265 23 N -0.617 5.617 24 Si 0.801 3.199 25 H -0.195 1.195 26 H -0.217 1.217 27 H -0.220 1.220 28 C -0.022 4.022 29 C -0.145 4.145 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.133 0.867 34 H 0.117 0.883 35 H 0.215 0.785 36 H 0.166 0.834 37 H 0.241 0.759 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.019 0.981 47 H 0.038 0.962 48 H 0.209 0.791 49 H 0.061 0.939 50 H 0.093 0.907 51 H 0.096 0.904 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.946 -17.788 0.270 29.035 hybrid contribution 1.457 0.472 -0.669 1.671 sum -21.489 -17.317 -0.398 27.601 Atomic orbital electron populations 1.22158 0.93487 1.04207 1.02518 1.22229 0.96199 0.78582 1.06190 1.43997 1.49401 1.12878 1.05016 1.22161 1.06263 0.92525 0.92512 1.22201 1.07542 0.98737 0.92556 1.20241 1.18020 0.95288 0.94431 1.17698 0.75638 0.82205 0.86802 1.90666 1.56472 1.83944 1.16274 1.45796 1.66372 1.12419 1.11008 1.20749 0.94789 0.85610 0.93044 0.91775 1.21833 0.96144 0.99379 0.98538 1.21432 0.98144 0.99155 0.95752 1.21526 0.94432 0.98001 1.01042 1.21439 0.97282 0.99717 0.95699 1.21445 0.93235 0.97756 0.98195 0.90358 1.20701 0.88132 0.92656 0.94797 1.42526 1.10776 1.08502 1.76400 1.19607 0.90595 0.93915 1.33504 0.91374 1.25517 1.02043 0.96004 1.02919 1.69813 1.34896 1.04396 1.52622 0.85101 0.79925 0.77742 0.77163 1.19463 1.21658 1.21981 1.20469 1.00637 0.90573 0.90493 1.20501 1.02523 1.02824 0.88690 0.88459 0.92903 0.92252 0.86675 0.88268 0.78497 0.83359 0.75922 0.92397 0.90357 0.90619 0.92198 0.91801 0.90842 0.93165 0.92064 0.98083 0.96194 0.79066 0.93935 0.90653 0.90398 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 71.98 0.74 -0.42 16 2 C 0.09 0.74 6.21 86.38 0.54 1.28 16 3 N -0.44 -7.44 2.69 -509.91 -1.37 -8.81 16 4 C -0.01 -0.14 11.33 83.11 0.94 0.80 16 5 C -0.19 -4.28 10.56 23.62 0.25 -4.04 16 6 C -0.27 -7.53 6.29 -19.04 -0.12 -7.65 16 7 C 0.59 19.00 7.77 86.61 0.67 19.68 16 8 O -0.59 -22.13 14.48 -4.13 -0.06 -22.19 16 9 N -0.71 -20.90 3.61 -445.94 -1.61 -22.51 16 10 C 0.16 5.00 2.23 45.00 0.10 5.10 16 11 H 0.06 2.25 7.58 -2.39 -0.02 2.24 16 12 C -0.12 -3.09 5.60 30.60 0.17 -2.92 16 13 C -0.11 -2.38 5.77 30.59 0.18 -2.20 16 14 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16 15 C -0.10 -3.15 4.90 30.59 0.15 -3.00 16 16 C -0.09 -2.92 2.02 -10.79 -0.02 -2.94 16 17 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 18 C 0.16 7.01 5.42 86.38 0.47 7.47 16 19 N -0.74 -38.70 5.33 -343.45 -1.83 -40.53 16 20 C -0.24 -14.13 9.99 84.03 0.84 -13.29 16 21 H 0.07 3.88 7.83 -2.91 -0.02 3.85 16 22 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 23 N -0.97 -59.73 13.06 21.65 0.28 -59.45 16 24 Si 0.97 47.17 29.55 68.60 2.03 49.20 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 27 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 28 C 0.10 2.26 6.89 41.78 0.29 2.54 16 29 C -0.09 -1.79 9.31 71.23 0.66 -1.13 16 30 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16 31 H 0.05 0.51 7.52 -2.39 -0.02 0.49 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.12 0.50 8.11 -2.39 -0.02 0.48 16 34 H 0.10 0.68 7.74 -2.39 -0.02 0.66 16 35 H 0.20 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.15 3.10 7.70 -2.91 -0.02 3.07 16 37 H 0.40 11.14 5.79 -92.71 -0.54 10.60 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 1.35 7.60 -2.39 -0.02 1.33 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.05 1.82 7.18 -2.39 -0.02 1.80 16 45 H 0.06 1.76 6.51 -2.39 -0.02 1.75 16 46 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.02 0.86 7.61 -2.39 -0.02 0.84 16 48 H 0.38 20.60 6.85 -92.71 -0.63 19.96 16 49 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 50 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 51 H 0.08 1.98 6.47 -2.38 -0.02 1.97 16 52 H 0.09 1.20 7.06 -2.39 -0.02 1.19 16 Total: -1.00 -74.10 405.31 3.68 -70.42 By element: Atomic # 1 Polarization: 41.14 SS G_CDS: -0.26 Total: 40.88 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 6.50 Total: -7.01 kcal Atomic # 7 Polarization: -126.77 SS G_CDS: -4.53 Total: -131.30 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.06 Total: -22.19 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -74.10 3.68 -70.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733075995.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.907 kcal (2) G-P(sol) polarization free energy of solvation -74.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds