Wall clock time and date at job start Tue Mar 31 2020 18:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99966 * 2 1 4 4 C 1.39675 * 119.99622 * 179.72113 * 2 1 3 5 5 C 1.38929 * 120.07054 * 179.72210 * 4 2 1 6 6 C 1.38083 * 119.92183 * 179.79236 * 5 4 2 7 7 C 1.38302 * 120.07722 * 0.48493 * 6 5 4 8 8 C 1.38266 * 120.14800 * 359.74768 * 7 6 5 9 9 C 1.50699 * 119.96409 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47114 * 270.02418 * 9 8 7 11 11 C 1.50699 * 109.47114 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00060 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99913 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00494 * 359.97438 * 13 11 10 15 15 C 1.46504 * 119.99681 * 179.97438 * 13 11 10 16 16 C 1.53003 * 109.47159 * 90.00222 * 15 13 11 17 17 C 1.52996 * 109.47185 * 179.97438 * 16 15 13 18 18 N 1.46504 * 109.47185 * 179.97438 * 17 16 15 19 19 C 1.36934 * 120.00444 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99396 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00512 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99824 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00109 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47627 * 90.00205 * 23 21 19 25 25 H 1.48511 * 109.46962 * 209.99841 * 23 21 19 26 26 H 1.48499 * 109.47431 * 329.99689 * 23 21 19 27 27 C 1.38130 * 120.07555 * 0.02562 * 8 7 6 28 28 H 1.08997 * 109.47067 * 240.28159 * 1 2 3 29 29 H 1.08998 * 109.46861 * 0.27903 * 1 2 3 30 30 H 1.09000 * 109.46860 * 120.27510 * 1 2 3 31 31 H 1.09009 * 109.46732 * 269.72379 * 3 2 1 32 32 H 1.08998 * 109.47268 * 29.71742 * 3 2 1 33 33 H 1.08996 * 109.47244 * 149.72315 * 3 2 1 34 34 H 1.08000 * 120.04161 * 0.02562 * 5 4 2 35 35 H 1.08004 * 119.96090 * 180.21469 * 6 5 4 36 36 H 1.08001 * 119.92993 * 179.76342 * 7 6 5 37 37 H 1.09001 * 109.46931 * 30.01984 * 9 8 7 38 38 H 1.08994 * 109.47413 * 150.02171 * 9 8 7 39 39 H 1.09006 * 109.47303 * 299.99771 * 10 9 8 40 40 H 1.09004 * 109.47609 * 59.99911 * 10 9 8 41 41 H 1.08996 * 109.47324 * 89.99450 * 14 13 11 42 42 H 1.08994 * 109.47460 * 210.00451 * 14 13 11 43 43 H 1.09004 * 109.46760 * 330.00088 * 14 13 11 44 44 H 1.09004 * 109.47031 * 209.99646 * 15 13 11 45 45 H 1.08996 * 109.47567 * 330.00335 * 15 13 11 46 46 H 1.09004 * 109.46679 * 299.99639 * 16 15 13 47 47 H 1.09002 * 109.47050 * 59.99272 * 16 15 13 48 48 H 1.09004 * 109.47062 * 299.99459 * 17 16 15 49 49 H 1.08996 * 109.47034 * 59.99899 * 17 16 15 50 50 H 0.97007 * 119.99897 * 359.97438 * 18 17 16 51 51 H 0.96989 * 120.00003 * 180.02562 * 22 21 19 52 52 H 1.07994 * 120.03672 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1634 -1.2097 0.0059 5 6 3.5526 -1.2115 0.0001 6 6 4.2399 -2.4091 0.0102 7 6 3.5468 -3.6059 0.0161 8 6 2.1642 -3.6077 0.0170 9 6 1.4132 -4.9142 0.0228 10 6 1.1586 -5.3625 -1.4177 11 6 0.4081 -6.6694 -1.4119 12 8 0.1070 -7.1911 -0.3592 13 7 0.0725 -7.2589 -2.5765 14 6 0.4367 -6.6291 -3.8481 15 6 -0.6565 -8.5296 -2.5708 16 6 -2.1616 -8.2542 -2.5717 17 6 -2.9229 -9.5812 -2.5663 18 7 -4.3640 -9.3174 -2.5665 19 6 -5.2511 -10.3606 -2.5627 20 1 -4.8883 -11.3779 -2.5592 21 6 -6.6165 -10.1107 -2.5624 22 7 -7.0586 -8.8709 -2.5662 23 14 -7.8265 -11.5338 -2.5565 24 1 -8.1460 -11.9062 -1.1549 25 1 -9.0716 -11.1278 -3.2568 26 1 -7.2241 -12.6987 -3.2531 27 6 1.4704 -2.4133 0.0116 28 1 -0.3633 -0.5094 0.8925 29 1 -0.3633 1.0277 -0.0050 30 1 -0.3633 -0.5181 -0.8875 31 1 2.3835 1.5809 -1.0278 32 1 1.6063 2.0296 0.5094 33 1 3.1478 1.1397 0.5181 34 1 4.0945 -0.2773 -0.0086 35 1 5.3199 -2.4112 0.0092 36 1 4.0868 -4.5413 0.0202 37 1 2.0039 -5.6706 0.5397 38 1 0.4607 -4.7836 0.5364 39 1 0.5678 -4.6062 -1.9346 40 1 2.1111 -5.4932 -1.9313 41 1 1.4184 -6.9842 -4.1614 42 1 -0.3024 -6.8875 -4.6064 43 1 0.4650 -5.5467 -3.7224 44 1 -0.3919 -9.1043 -3.4584 45 1 -0.3915 -9.0966 -1.6785 46 1 -2.4262 -7.6795 -1.6840 47 1 -2.4266 -7.6871 -3.4640 48 1 -2.6583 -10.1555 -3.4542 49 1 -2.6579 -10.1486 -1.6742 50 1 -4.6899 -8.4037 -2.5694 51 1 -8.0127 -8.6963 -2.5656 52 1 0.3905 -2.4154 0.0119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733121957.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:58 Heat of formation + Delta-G solvation = 1.937202 kcal Electronic energy + Delta-G solvation = -27532.249947 eV Core-core repulsion = 23724.857884 eV Total energy + Delta-G solvation = -3807.392063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.19029 -39.67025 -36.87045 -36.12384 -34.76942 -33.90610 -32.22868 -30.74151 -30.15911 -29.46788 -28.40195 -26.89436 -25.71515 -25.10417 -24.08701 -22.52671 -21.80753 -20.89014 -20.34945 -19.02825 -17.64374 -17.01314 -16.89496 -16.31065 -16.07392 -15.75428 -15.65389 -15.40665 -14.62738 -14.49969 -14.41930 -14.17500 -13.75449 -13.62081 -13.38712 -13.17968 -13.03726 -12.98614 -12.89779 -12.72256 -12.54535 -12.49877 -12.20905 -12.06283 -11.84168 -11.76150 -11.64920 -11.15041 -10.96162 -10.88517 -10.81509 -10.69611 -10.34418 -10.06959 -10.04092 -9.74088 -9.64630 -8.92634 -8.82207 -8.61131 -7.57518 -6.86675 -5.71570 -3.00038 1.20334 1.40563 2.67817 2.78989 3.02405 3.47230 3.51788 3.53687 3.65893 4.35368 4.58083 4.61699 4.64067 4.74813 4.86392 4.88895 4.89529 4.96456 5.02188 5.04736 5.21220 5.22056 5.24110 5.26061 5.31497 5.34193 5.39354 5.42135 5.45797 5.51448 5.59651 5.61554 5.75202 5.76806 5.80159 5.96909 6.00908 6.09114 6.14464 6.32387 6.35311 6.44265 6.52623 6.59441 6.65806 6.91819 6.92368 6.94441 7.20605 7.39786 7.74470 8.22439 8.47559 9.58206 10.17259 10.51933 11.51630 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.001804 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.559073 B =15518.190296 C =16703.039952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.640 5.640 3 C 0.094 3.906 4 C 0.214 3.786 5 C -0.203 4.203 6 C -0.072 4.072 7 C -0.174 4.174 8 C -0.033 4.033 9 C -0.067 4.067 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.535 6.535 13 N -0.617 5.617 14 C 0.077 3.923 15 C 0.118 3.882 16 C -0.138 4.138 17 C 0.156 3.844 18 N -0.733 5.733 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.190 4.190 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.018 0.982 49 H 0.020 0.980 50 H 0.383 0.617 51 H 0.254 0.746 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.019 20.599 1.422 33.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.353 5.353 3 C -0.049 4.049 4 C 0.113 3.887 5 C -0.226 4.226 6 C -0.091 4.091 7 C -0.194 4.194 8 C -0.033 4.033 9 C -0.105 4.105 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.412 6.412 13 N -0.351 5.351 14 C -0.066 4.066 15 C -0.004 4.004 16 C -0.177 4.177 17 C 0.028 3.972 18 N -0.377 5.377 19 C -0.369 4.369 20 H 0.089 0.911 21 C -0.213 4.213 22 N -0.584 5.584 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.212 4.212 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.036 0.964 49 H 0.038 0.962 50 H 0.217 0.783 51 H 0.064 0.936 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 25.684 20.327 1.963 32.813 hybrid contribution -0.915 -0.268 -0.188 0.972 sum 24.768 20.059 1.774 31.922 Atomic orbital electron populations 1.21618 0.79311 1.02399 1.01500 1.46327 1.05046 1.03122 1.80770 1.21641 0.97264 0.84943 1.01052 1.17794 0.91157 0.85572 0.94203 1.20642 0.92059 0.98561 1.11298 1.20849 0.99298 0.91918 0.97016 1.20827 0.93501 0.97932 1.07124 1.19643 0.93579 0.94115 0.96011 1.20364 1.01024 0.93593 0.95515 1.21649 1.01261 0.95086 0.99007 1.20702 0.79461 0.86651 0.83436 1.90727 1.54613 1.65175 1.30648 1.47933 1.56964 1.24034 1.06131 1.21810 1.00738 0.98277 0.85821 1.21485 0.91654 0.84234 1.03075 1.22048 0.93609 0.99726 1.02330 1.20547 0.85478 0.93418 0.97769 1.42357 0.99227 1.06689 1.89467 1.19261 0.87314 0.87967 1.42351 0.91136 1.24759 0.96908 0.96389 1.03199 1.69669 1.13253 1.17449 1.58019 0.86161 0.80917 0.81432 0.77524 1.21723 1.21797 1.20761 1.20559 0.99631 0.90527 1.10480 0.92679 0.90947 0.92610 0.93502 0.91631 0.91426 0.86350 0.86312 0.86424 0.90064 0.90121 0.88879 0.88914 0.92628 0.90655 0.91103 0.90614 0.89799 0.91619 0.92088 0.96413 0.96207 0.78343 0.93568 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 9.40 59.85 0.56 1.17 16 2 N -0.64 -4.99 3.41 -187.55 -0.64 -5.62 16 3 C 0.09 0.50 10.15 59.85 0.61 1.10 16 4 C 0.21 2.00 6.55 -83.79 -0.55 1.45 16 5 C -0.20 -1.73 9.20 -39.38 -0.36 -2.10 16 6 C -0.07 -0.59 10.04 -39.61 -0.40 -0.99 16 7 C -0.17 -1.56 9.70 -39.55 -0.38 -1.94 16 8 C -0.03 -0.32 5.13 -104.65 -0.54 -0.86 16 9 C -0.07 -0.69 4.63 -27.88 -0.13 -0.82 16 10 C -0.13 -1.25 4.23 -27.88 -0.12 -1.37 16 11 C 0.51 6.84 7.67 -10.98 -0.08 6.76 16 12 O -0.54 -9.44 15.56 5.56 0.09 -9.35 16 13 N -0.62 -7.59 2.87 -181.57 -0.52 -8.11 16 14 C 0.08 0.64 10.24 59.85 0.61 1.25 16 15 C 0.12 1.67 5.41 -4.04 -0.02 1.65 16 16 C -0.14 -2.42 5.65 -26.73 -0.15 -2.57 16 17 C 0.16 3.33 6.26 -4.04 -0.03 3.30 16 18 N -0.73 -19.70 5.60 -59.91 -0.34 -20.04 16 19 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 20 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 21 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 22 N -0.93 -29.22 13.06 55.49 0.72 -28.50 16 23 Si 0.91 23.05 29.55 -169.99 -5.02 18.02 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 C -0.19 -1.86 8.96 -39.38 -0.35 -2.22 16 28 H 0.05 0.36 7.95 -51.93 -0.41 -0.05 16 29 H 0.07 0.33 7.79 -51.93 -0.40 -0.07 16 30 H 0.06 0.36 7.95 -51.93 -0.41 -0.05 16 31 H 0.05 0.23 8.14 -51.92 -0.42 -0.20 16 32 H 0.06 0.26 7.92 -51.93 -0.41 -0.16 16 33 H 0.07 0.32 6.22 -51.93 -0.32 0.00 16 34 H 0.12 0.80 6.16 -52.49 -0.32 0.48 16 35 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 38 H 0.08 0.93 8.04 -51.93 -0.42 0.52 16 39 H 0.09 0.80 7.40 -51.93 -0.38 0.41 16 40 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 43 H 0.07 0.48 6.44 -51.93 -0.33 0.15 16 44 H 0.08 0.91 8.07 -51.93 -0.42 0.50 16 45 H 0.08 1.31 7.42 -51.93 -0.39 0.92 16 46 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.38 10.80 7.67 -40.82 -0.31 10.49 16 51 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 52 H 0.12 1.13 6.73 -52.49 -0.35 0.78 16 LS Contribution 421.19 15.07 6.35 6.35 Total: -1.00 -35.78 421.19 -10.02 -45.80 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -9.08 Total: 5.34 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -1.58 Total: -3.89 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -0.77 Total: -62.27 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -35.78 -10.02 -45.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733121957.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.740 kcal (2) G-P(sol) polarization free energy of solvation -35.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds