Wall clock time and date at job start Tue Mar 31 2020 18:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99966 * 2 1 4 4 C 1.39675 * 119.99622 * 179.72113 * 2 1 3 5 5 C 1.38929 * 120.07054 * 179.72210 * 4 2 1 6 6 C 1.38083 * 119.92183 * 179.79236 * 5 4 2 7 7 C 1.38302 * 120.07722 * 0.48493 * 6 5 4 8 8 C 1.38266 * 120.14800 * 359.74768 * 7 6 5 9 9 C 1.50699 * 119.96409 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47114 * 270.02418 * 9 8 7 11 11 C 1.50699 * 109.47114 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00060 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99913 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00494 * 359.97438 * 13 11 10 15 15 C 1.46504 * 119.99681 * 179.97438 * 13 11 10 16 16 C 1.53003 * 109.47159 * 90.00222 * 15 13 11 17 17 C 1.52996 * 109.47185 * 179.97438 * 16 15 13 18 18 N 1.46504 * 109.47185 * 179.97438 * 17 16 15 19 19 C 1.36934 * 120.00444 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99396 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00512 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99824 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00109 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47627 * 90.00205 * 23 21 19 25 25 H 1.48511 * 109.46962 * 209.99841 * 23 21 19 26 26 H 1.48499 * 109.47431 * 329.99689 * 23 21 19 27 27 C 1.38130 * 120.07555 * 0.02562 * 8 7 6 28 28 H 1.08997 * 109.47067 * 240.28159 * 1 2 3 29 29 H 1.08998 * 109.46861 * 0.27903 * 1 2 3 30 30 H 1.09000 * 109.46860 * 120.27510 * 1 2 3 31 31 H 1.09009 * 109.46732 * 269.72379 * 3 2 1 32 32 H 1.08998 * 109.47268 * 29.71742 * 3 2 1 33 33 H 1.08996 * 109.47244 * 149.72315 * 3 2 1 34 34 H 1.08000 * 120.04161 * 0.02562 * 5 4 2 35 35 H 1.08004 * 119.96090 * 180.21469 * 6 5 4 36 36 H 1.08001 * 119.92993 * 179.76342 * 7 6 5 37 37 H 1.09001 * 109.46931 * 30.01984 * 9 8 7 38 38 H 1.08994 * 109.47413 * 150.02171 * 9 8 7 39 39 H 1.09006 * 109.47303 * 299.99771 * 10 9 8 40 40 H 1.09004 * 109.47609 * 59.99911 * 10 9 8 41 41 H 1.08996 * 109.47324 * 89.99450 * 14 13 11 42 42 H 1.08994 * 109.47460 * 210.00451 * 14 13 11 43 43 H 1.09004 * 109.46760 * 330.00088 * 14 13 11 44 44 H 1.09004 * 109.47031 * 209.99646 * 15 13 11 45 45 H 1.08996 * 109.47567 * 330.00335 * 15 13 11 46 46 H 1.09004 * 109.46679 * 299.99639 * 16 15 13 47 47 H 1.09002 * 109.47050 * 59.99272 * 16 15 13 48 48 H 1.09004 * 109.47062 * 299.99459 * 17 16 15 49 49 H 1.08996 * 109.47034 * 59.99899 * 17 16 15 50 50 H 0.97007 * 119.99897 * 359.97438 * 18 17 16 51 51 H 0.96989 * 120.00003 * 180.02562 * 22 21 19 52 52 H 1.07994 * 120.03672 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1634 -1.2097 0.0059 5 6 3.5526 -1.2115 0.0001 6 6 4.2399 -2.4091 0.0102 7 6 3.5468 -3.6059 0.0161 8 6 2.1642 -3.6077 0.0170 9 6 1.4132 -4.9142 0.0228 10 6 1.1586 -5.3625 -1.4177 11 6 0.4081 -6.6694 -1.4119 12 8 0.1070 -7.1911 -0.3592 13 7 0.0725 -7.2589 -2.5765 14 6 0.4367 -6.6291 -3.8481 15 6 -0.6565 -8.5296 -2.5708 16 6 -2.1616 -8.2542 -2.5717 17 6 -2.9229 -9.5812 -2.5663 18 7 -4.3640 -9.3174 -2.5665 19 6 -5.2511 -10.3606 -2.5627 20 1 -4.8883 -11.3779 -2.5592 21 6 -6.6165 -10.1107 -2.5624 22 7 -7.0586 -8.8709 -2.5662 23 14 -7.8265 -11.5338 -2.5565 24 1 -8.1460 -11.9062 -1.1549 25 1 -9.0716 -11.1278 -3.2568 26 1 -7.2241 -12.6987 -3.2531 27 6 1.4704 -2.4133 0.0116 28 1 -0.3633 -0.5094 0.8925 29 1 -0.3633 1.0277 -0.0050 30 1 -0.3633 -0.5181 -0.8875 31 1 2.3835 1.5809 -1.0278 32 1 1.6063 2.0296 0.5094 33 1 3.1478 1.1397 0.5181 34 1 4.0945 -0.2773 -0.0086 35 1 5.3199 -2.4112 0.0092 36 1 4.0868 -4.5413 0.0202 37 1 2.0039 -5.6706 0.5397 38 1 0.4607 -4.7836 0.5364 39 1 0.5678 -4.6062 -1.9346 40 1 2.1111 -5.4932 -1.9313 41 1 1.4184 -6.9842 -4.1614 42 1 -0.3024 -6.8875 -4.6064 43 1 0.4650 -5.5467 -3.7224 44 1 -0.3919 -9.1043 -3.4584 45 1 -0.3915 -9.0966 -1.6785 46 1 -2.4262 -7.6795 -1.6840 47 1 -2.4266 -7.6871 -3.4640 48 1 -2.6583 -10.1555 -3.4542 49 1 -2.6579 -10.1486 -1.6742 50 1 -4.6899 -8.4037 -2.5694 51 1 -8.0127 -8.6963 -2.5656 52 1 0.3905 -2.4154 0.0119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733121957.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:57 Heat of formation + Delta-G solvation = -19.304524 kcal Electronic energy + Delta-G solvation = -27533.171058 eV Core-core repulsion = 23724.857884 eV Total energy + Delta-G solvation = -3808.313173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.10050 -40.45278 -37.68820 -37.31103 -36.38518 -34.74686 -33.99133 -31.87201 -31.19113 -30.44095 -28.98420 -27.91501 -26.98253 -25.68314 -25.46402 -24.03852 -22.58762 -22.38178 -21.02933 -20.03249 -19.17186 -18.38192 -17.75177 -17.25649 -17.03896 -16.56011 -16.45156 -16.37285 -15.95156 -15.90955 -15.42749 -15.22104 -15.03590 -14.85279 -14.45696 -14.27320 -14.02273 -13.66190 -13.61078 -13.53931 -13.46611 -13.36923 -13.15419 -13.01526 -12.81229 -12.74903 -12.69492 -12.61638 -12.41416 -12.32997 -12.07228 -11.91903 -11.82490 -11.80731 -11.63642 -10.96752 -10.84802 -10.62756 -9.65945 -9.62006 -9.04794 -8.17462 -7.98019 -5.28270 0.52581 0.74368 1.45425 1.48606 1.56976 1.64064 2.06074 2.27842 2.54660 2.98425 3.35216 3.52280 3.85793 3.92960 3.99364 4.04824 4.14595 4.18151 4.24478 4.25869 4.34314 4.37570 4.43928 4.51597 4.52701 4.58366 4.60519 4.66540 4.67537 4.72113 4.76189 4.78771 4.81446 4.88061 4.89569 4.92409 4.98692 5.07826 5.11460 5.21675 5.28117 5.28904 5.42467 5.46091 5.56765 5.68099 5.84836 6.02089 6.24068 6.38110 6.42388 6.59616 7.19963 7.29361 8.04387 8.28193 9.25924 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.001804 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.559073 B =15518.190296 C =16703.039952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.647 5.647 3 C 0.090 3.910 4 C 0.203 3.797 5 C -0.209 4.209 6 C -0.072 4.072 7 C -0.183 4.183 8 C -0.039 4.039 9 C -0.061 4.061 10 C -0.117 4.117 11 C 0.502 3.498 12 O -0.587 6.587 13 N -0.616 5.616 14 C 0.069 3.931 15 C 0.126 3.874 16 C -0.120 4.120 17 C 0.154 3.846 18 N -0.749 5.749 19 C -0.250 4.250 20 H 0.078 0.922 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.980 3.020 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.266 1.266 27 C -0.207 4.207 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.128 0.872 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.066 0.934 46 H 0.035 0.965 47 H 0.067 0.933 48 H 0.035 0.965 49 H 0.013 0.987 50 H 0.372 0.628 51 H 0.252 0.748 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.879 21.120 0.040 34.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.359 5.359 3 C -0.053 4.053 4 C 0.100 3.900 5 C -0.231 4.231 6 C -0.091 4.091 7 C -0.203 4.203 8 C -0.040 4.040 9 C -0.099 4.099 10 C -0.156 4.156 11 C 0.292 3.708 12 O -0.468 6.468 13 N -0.348 5.348 14 C -0.072 4.072 15 C 0.002 3.998 16 C -0.160 4.160 17 C 0.027 3.973 18 N -0.392 5.392 19 C -0.382 4.382 20 H 0.096 0.904 21 C -0.272 4.272 22 N -0.622 5.622 23 Si 0.808 3.192 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.191 1.191 27 C -0.229 4.229 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.146 0.854 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.138 0.862 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.124 0.876 45 H 0.084 0.916 46 H 0.054 0.946 47 H 0.086 0.914 48 H 0.052 0.948 49 H 0.031 0.969 50 H 0.203 0.797 51 H 0.061 0.939 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 27.594 20.857 0.542 34.594 hybrid contribution -1.434 -0.378 0.247 1.504 sum 26.160 20.479 0.789 33.232 Atomic orbital electron populations 1.21679 0.78974 1.03525 1.00916 1.46567 1.05568 1.03456 1.80284 1.21798 0.97583 0.84197 1.01701 1.17998 0.91804 0.85977 0.94177 1.20914 0.91847 0.99530 1.10847 1.21149 1.00541 0.91441 0.95939 1.21000 0.93155 0.98880 1.07272 1.19584 0.94038 0.93497 0.96861 1.20241 0.99866 0.93957 0.95856 1.21621 1.02108 0.93036 0.98881 1.21411 0.79034 0.87456 0.82935 1.90703 1.56795 1.66697 1.32596 1.48040 1.55949 1.23380 1.07454 1.22114 1.02075 0.99262 0.83763 1.21296 0.89349 0.85504 1.03637 1.21852 0.95695 0.97292 1.01115 1.20712 0.83116 0.95562 0.97876 1.42609 1.01313 1.05721 1.89526 1.19701 0.88153 0.88853 1.41478 0.90421 1.25680 0.98849 0.99133 1.03499 1.69835 1.13351 1.19637 1.59424 0.85046 0.78142 0.78543 0.77453 1.21477 1.21848 1.19071 1.20605 0.99555 0.91113 1.11637 0.93434 0.88947 0.93093 0.92939 0.90179 0.90926 0.84657 0.83988 0.85392 0.90966 0.92346 0.87458 0.86208 0.90147 0.90284 0.89322 0.87637 0.91594 0.94564 0.91447 0.94756 0.96881 0.79672 0.93902 0.86650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.14 9.40 127.77 1.20 2.34 16 2 N -0.65 -9.44 3.41 -747.27 -2.55 -11.99 16 3 C 0.09 0.79 10.15 127.77 1.30 2.08 16 4 C 0.20 3.63 6.55 38.21 0.25 3.88 16 5 C -0.21 -3.22 9.20 22.40 0.21 -3.02 16 6 C -0.07 -1.05 10.04 22.25 0.22 -0.83 16 7 C -0.18 -3.06 9.70 22.29 0.22 -2.85 16 8 C -0.04 -0.75 5.13 -19.88 -0.10 -0.86 16 9 C -0.06 -1.30 4.63 29.85 0.14 -1.16 16 10 C -0.12 -2.13 4.23 29.85 0.13 -2.01 16 11 C 0.50 13.42 7.67 87.66 0.67 14.10 16 12 O -0.59 -21.62 15.56 -3.03 -0.05 -21.67 16 13 N -0.62 -14.37 2.87 -846.75 -2.43 -16.80 16 14 C 0.07 0.96 10.24 127.77 1.31 2.27 16 15 C 0.13 3.46 5.41 86.38 0.47 3.93 16 16 C -0.12 -4.25 5.65 30.59 0.17 -4.07 16 17 C 0.15 6.59 6.26 86.38 0.54 7.13 16 18 N -0.75 -40.86 5.60 -343.45 -1.92 -42.78 16 19 C -0.25 -14.70 9.99 84.03 0.84 -13.86 16 20 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 21 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 22 N -0.97 -61.71 13.06 21.65 0.28 -61.43 16 23 Si 0.98 47.50 29.55 68.60 2.03 49.52 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 C -0.21 -4.08 8.96 22.40 0.20 -3.88 16 28 H 0.05 0.65 7.95 -2.39 -0.02 0.63 16 29 H 0.09 0.73 7.79 -2.39 -0.02 0.71 16 30 H 0.05 0.67 7.95 -2.39 -0.02 0.65 16 31 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.08 0.46 7.92 -2.39 -0.02 0.44 16 33 H 0.07 0.56 6.22 -2.39 -0.01 0.54 16 34 H 0.14 1.54 6.16 -2.91 -0.02 1.52 16 35 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.07 1.63 8.04 -2.39 -0.02 1.61 16 38 H 0.06 1.47 8.04 -2.39 -0.02 1.45 16 39 H 0.11 1.68 7.40 -2.38 -0.02 1.66 16 40 H 0.12 1.56 8.11 -2.38 -0.02 1.54 16 41 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 1.07 8.07 -2.39 -0.02 1.05 16 43 H 0.09 0.93 6.44 -2.39 -0.02 0.91 16 44 H 0.11 2.29 8.07 -2.38 -0.02 2.27 16 45 H 0.07 2.07 7.42 -2.39 -0.02 2.06 16 46 H 0.04 1.47 8.14 -2.38 -0.02 1.46 16 47 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 49 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.37 21.56 7.67 -92.70 -0.71 20.85 16 51 H 0.25 15.40 8.31 -92.72 -0.77 14.63 16 52 H 0.12 2.29 6.73 -2.91 -0.02 2.27 16 Total: -1.00 -78.82 421.19 3.76 -75.06 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.18 Total: 31.20 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 8.23 Total: -1.11 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -6.62 Total: -133.00 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.05 Total: -21.67 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.52 kcal Total: -78.82 3.76 -75.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733121957.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.752 kcal (2) G-P(sol) polarization free energy of solvation -78.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds