Wall clock time and date at job start Tue Mar 31 2020 17:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46873 * 2 1 4 4 C 1.50694 * 109.47642 * 120.00258 * 2 1 3 5 5 O 1.21286 * 120.00315 * 119.99894 * 4 2 1 6 6 N 1.34777 * 120.00252 * 300.00394 * 4 2 1 7 7 C 1.46500 * 120.00297 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47094 * 179.97438 * 7 6 4 9 9 H 1.08992 * 109.47514 * 305.00368 * 8 7 6 10 10 C 1.53002 * 109.46637 * 65.00239 * 8 7 6 11 11 C 1.52997 * 109.46817 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47452 * 300.00239 * 11 10 8 13 13 H 1.09002 * 109.46935 * 300.00125 * 12 11 10 14 14 C 1.53002 * 109.47197 * 180.02562 * 12 11 10 15 15 N 1.46504 * 109.46806 * 175.00000 * 14 12 11 16 16 C 1.36939 * 119.99770 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99887 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99722 * 179.97438 * 16 15 14 19 19 N 1.31609 * 120.00344 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 119.99589 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46748 * 90.00539 * 20 18 16 22 22 H 1.48502 * 109.46756 * 210.00403 * 20 18 16 23 23 H 1.48498 * 109.46891 * 330.00190 * 20 18 16 24 24 C 1.52999 * 109.47159 * 59.99536 * 12 11 10 25 25 C 1.52997 * 109.47317 * 300.00546 * 24 12 11 26 26 N 1.46508 * 109.47264 * 240.00765 * 2 1 3 27 27 C 1.36346 * 125.62782 * 299.69316 * 26 2 1 28 28 C 1.34855 * 108.21358 * 179.82973 * 27 26 2 29 29 C 1.40890 * 107.41687 * 0.42161 * 28 27 26 30 30 C 1.34851 * 107.41832 * 359.73892 * 29 28 27 31 31 H 1.09000 * 109.46873 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47063 * 299.99399 * 1 2 3 33 33 H 1.08998 * 109.47360 * 59.99496 * 1 2 3 34 34 H 0.97004 * 119.99344 * 359.97438 * 6 4 2 35 35 H 1.09008 * 109.47071 * 59.99858 * 7 6 4 36 36 H 1.09000 * 109.47025 * 300.00099 * 7 6 4 37 37 H 1.08993 * 109.47662 * 299.99908 * 10 8 7 38 38 H 1.09002 * 109.47075 * 60.00414 * 10 8 7 39 39 H 1.09002 * 109.47153 * 60.00231 * 11 10 8 40 40 H 1.09001 * 109.47289 * 180.02562 * 11 10 8 41 41 H 1.09000 * 109.46791 * 294.99945 * 14 12 11 42 42 H 1.08998 * 109.47254 * 54.99840 * 14 12 11 43 43 H 0.96997 * 119.99996 * 359.97438 * 15 14 12 44 44 H 0.97002 * 120.00680 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.46929 * 179.97438 * 24 12 11 46 46 H 1.09002 * 109.46716 * 60.00455 * 24 12 11 47 47 H 1.09002 * 109.47153 * 299.99641 * 25 24 12 48 48 H 1.09001 * 109.46832 * 179.97438 * 25 24 12 49 49 H 1.07997 * 125.89169 * 359.95456 * 27 26 2 50 50 H 1.08001 * 126.29201 * 180.15988 * 28 27 26 51 51 H 1.08001 * 126.29541 * 179.73517 * 29 28 27 52 52 H 1.07998 * 125.89433 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7297 -1.6965 1.1190 6 7 1.7069 -0.2501 2.4545 7 6 2.1949 -0.9411 3.6506 8 6 1.6855 -0.2195 4.8999 9 1 1.9744 0.8305 4.8563 10 6 0.1605 -0.3266 4.9644 11 6 -0.3488 0.3944 6.2141 12 6 0.2610 -0.2514 7.4598 13 1 -0.0280 -1.3016 7.5031 14 6 -0.2489 0.4692 8.7095 15 7 0.2392 -0.2223 9.9053 16 6 -0.0912 0.2452 11.1493 17 1 -0.7112 1.1239 11.2488 18 6 0.3709 -0.4103 12.2822 19 7 1.1269 -1.4807 12.1609 20 14 -0.0792 0.2279 13.9793 21 1 -1.3427 -0.4099 14.4288 22 1 1.0084 -0.0998 14.9358 23 1 -0.2610 1.7006 13.9220 24 6 1.7859 -0.1445 7.3952 25 6 2.2953 -0.8655 6.1456 26 7 2.0184 -0.6905 -1.1963 27 6 1.7656 -1.9901 -1.5221 28 6 2.3799 -2.2585 -2.6922 29 6 3.0440 -1.0843 -3.0989 30 6 2.8054 -0.1415 -2.1648 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.1494 0.5387 2.5435 35 1 3.2849 -0.9414 3.6507 36 1 1.8312 -1.9686 3.6504 37 1 -0.2739 0.1332 4.0768 38 1 -0.1284 -1.3767 5.0082 39 1 -0.0598 1.4446 6.1708 40 1 -1.4352 0.3178 6.2603 41 1 0.1147 1.4968 8.7101 42 1 -1.3389 0.4695 8.7094 43 1 0.7964 -1.0112 9.8158 44 1 1.4495 -1.9390 12.9526 45 1 2.2202 -0.6042 8.2829 46 1 2.0749 0.9056 7.3520 47 1 2.0063 -1.9156 6.1889 48 1 3.3816 -0.7888 6.0994 49 1 1.1737 -2.6841 -0.9439 50 1 2.3687 -3.2015 -3.2185 51 1 3.6355 -0.9619 -3.9942 52 1 3.1745 0.8733 -2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733565057.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:04 Heat of formation + Delta-G solvation = 2.249857 kcal Electronic energy + Delta-G solvation = -28205.811989 eV Core-core repulsion = 24398.433484 eV Total energy + Delta-G solvation = -3807.378505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.67697 -39.99719 -38.80978 -35.73261 -34.76836 -34.11443 -32.09534 -30.75303 -30.13865 -29.53518 -28.91401 -26.93858 -25.06432 -23.99319 -22.76111 -22.14418 -21.28684 -20.68645 -20.49854 -19.89371 -19.55299 -18.12704 -17.33827 -17.10375 -16.15855 -15.77464 -15.15520 -14.91151 -14.67494 -14.54240 -14.14416 -13.96487 -13.92162 -13.83642 -13.65523 -13.26519 -13.14488 -12.95646 -12.81831 -12.65583 -12.51988 -12.30946 -12.16798 -12.09987 -12.03818 -11.79543 -11.29121 -11.02690 -10.92733 -10.88922 -10.76424 -10.37346 -10.21852 -10.12886 -9.98510 -9.78249 -9.57808 -9.44898 -8.86385 -8.83930 -8.30666 -6.90313 -5.76270 -3.04302 1.95113 2.10096 2.43592 2.88920 2.91444 3.43041 3.48066 3.49839 4.00558 4.20537 4.23863 4.47760 4.58568 4.62140 4.67331 4.71783 4.94034 4.95596 5.05508 5.16368 5.19843 5.28601 5.34067 5.42880 5.45352 5.47615 5.48475 5.56139 5.61690 5.62157 5.65757 5.69774 5.93412 6.00215 6.07306 6.10988 6.12130 6.18046 6.24036 6.25016 6.30785 6.40674 6.54230 6.72226 6.80746 6.85926 6.94313 6.96134 7.02289 7.15566 7.70052 7.72133 8.43114 9.54118 10.13418 10.47912 11.46697 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.041798 B = 0.001656 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.729396 B =16902.768131 C =17220.100663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 H 0.122 0.878 4 C 0.499 3.501 5 O -0.518 6.518 6 N -0.721 5.721 7 C 0.123 3.877 8 C -0.097 4.097 9 H 0.076 0.924 10 C -0.111 4.111 11 C -0.110 4.110 12 C -0.094 4.094 13 H 0.069 0.931 14 C 0.157 3.843 15 N -0.732 5.732 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.108 4.108 25 C -0.110 4.110 26 N -0.434 5.434 27 C 0.017 3.983 28 C -0.209 4.209 29 C -0.196 4.196 30 C -0.021 4.021 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.401 0.599 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.017 0.983 42 H 0.016 0.984 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.154 0.846 50 H 0.133 0.867 51 H 0.134 0.866 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.192 4.875 -29.514 29.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.140 0.860 4 C 0.282 3.718 5 O -0.392 6.392 6 N -0.374 5.374 7 C 0.000 4.000 8 C -0.116 4.116 9 H 0.094 0.906 10 C -0.149 4.149 11 C -0.149 4.149 12 C -0.113 4.113 13 H 0.087 0.913 14 C 0.029 3.971 15 N -0.376 5.376 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.146 4.146 25 C -0.149 4.149 26 N -0.111 5.111 27 C -0.112 4.112 28 C -0.233 4.233 29 C -0.221 4.221 30 C -0.150 4.150 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.236 0.764 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.094 0.906 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.172 0.828 50 H 0.151 0.849 51 H 0.151 0.849 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.142 4.425 -29.148 29.482 hybrid contribution -0.245 0.450 1.123 1.235 sum -0.103 4.875 -28.025 28.446 Atomic orbital electron populations 1.22139 0.91078 1.04324 1.04161 1.21266 0.96893 0.97486 0.83520 0.85975 1.20618 0.81079 0.85356 0.84748 1.90801 1.36616 1.25502 1.86304 1.46006 1.53725 1.32227 1.05467 1.21549 0.99288 0.96502 0.82655 1.21440 0.96240 1.00222 0.93701 0.90564 1.21589 0.94208 1.01285 0.97781 1.21516 0.99998 0.99435 0.93902 1.21323 0.95166 1.00321 0.94457 0.91291 1.20685 0.95882 0.94547 0.85967 1.42383 1.61444 1.33340 1.00446 1.19242 1.25545 1.08540 0.83697 0.91295 1.24727 1.00560 0.97976 0.97780 1.69650 1.39427 1.20867 1.28324 0.86202 0.77445 0.78076 0.84545 1.21761 1.21782 1.20816 1.21508 0.95498 1.00352 0.97225 1.21525 0.99704 1.00042 0.93586 1.43700 1.40152 1.10445 1.16786 1.21648 1.05770 0.85464 0.98356 1.20856 1.05049 0.99316 0.98114 1.20856 1.06246 0.93873 1.01123 1.21762 1.01605 0.99889 0.91714 0.90964 0.89995 0.90312 0.76391 0.91299 0.91142 0.92696 0.91732 0.92101 0.91998 0.96560 0.96634 0.78246 0.93552 0.90551 0.92363 0.91670 0.91990 0.82812 0.84885 0.84851 0.82411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 9.14 37.16 0.34 -0.34 16 2 C 0.12 0.74 3.36 -69.08 -0.23 0.51 16 3 H 0.12 0.48 8.06 -51.93 -0.42 0.06 16 4 C 0.50 4.54 7.11 -10.99 -0.08 4.47 16 5 O -0.52 -7.16 15.44 5.55 0.09 -7.08 16 6 N -0.72 -5.10 5.18 -60.29 -0.31 -5.42 16 7 C 0.12 1.09 5.06 -4.04 -0.02 1.07 16 8 C -0.10 -0.86 2.23 -90.62 -0.20 -1.06 16 9 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 10 C -0.11 -0.99 5.08 -26.73 -0.14 -1.12 16 11 C -0.11 -1.25 5.20 -26.73 -0.14 -1.39 16 12 C -0.09 -1.41 2.22 -90.62 -0.20 -1.62 16 13 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 14 C 0.16 3.08 5.65 -4.04 -0.02 3.06 16 15 N -0.73 -18.36 5.33 -59.91 -0.32 -18.68 16 16 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.42 5.50 -17.44 -0.10 -0.52 16 19 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 20 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C -0.11 -1.56 5.08 -26.73 -0.14 -1.70 16 25 C -0.11 -1.25 5.20 -26.73 -0.14 -1.39 16 26 N -0.43 -3.93 2.40 -111.26 -0.27 -4.20 16 27 C 0.02 0.18 9.56 -16.75 -0.16 0.02 16 28 C -0.21 -2.15 10.86 -39.78 -0.43 -2.58 16 29 C -0.20 -1.89 10.86 -39.78 -0.43 -2.32 16 30 C -0.02 -0.19 11.39 -16.75 -0.19 -0.38 16 31 H 0.07 0.39 7.92 -51.93 -0.41 -0.02 16 32 H 0.08 0.19 7.56 -51.93 -0.39 -0.20 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.40 1.75 7.07 -40.82 -0.29 1.46 16 35 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.37 7.18 -51.93 -0.37 0.00 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.38 10.07 6.85 -40.82 -0.28 9.79 16 44 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.08 1.34 7.18 -51.93 -0.37 0.97 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 50 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 51 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 52 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 411.82 15.07 6.21 6.21 Total: -1.00 -34.39 411.82 -10.60 -44.99 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -9.27 Total: 6.42 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -2.43 Total: -12.14 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.17 Total: -55.78 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.09 Total: -7.08 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.39 -10.60 -44.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733565057.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.244 kcal (2) G-P(sol) polarization free energy of solvation -34.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds