Wall clock time and date at job start Tue Mar 31 2020 17:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46873 * 2 1 4 4 C 1.50694 * 109.47642 * 120.00258 * 2 1 3 5 5 O 1.21286 * 120.00315 * 119.99894 * 4 2 1 6 6 N 1.34777 * 120.00252 * 300.00394 * 4 2 1 7 7 C 1.46500 * 120.00297 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47094 * 179.97438 * 7 6 4 9 9 H 1.08992 * 109.47514 * 305.00368 * 8 7 6 10 10 C 1.53002 * 109.46637 * 65.00239 * 8 7 6 11 11 C 1.52997 * 109.46817 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47452 * 300.00239 * 11 10 8 13 13 H 1.09002 * 109.46935 * 300.00125 * 12 11 10 14 14 C 1.53002 * 109.47197 * 180.02562 * 12 11 10 15 15 N 1.46504 * 109.46806 * 175.00000 * 14 12 11 16 16 C 1.36939 * 119.99770 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99887 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99722 * 179.97438 * 16 15 14 19 19 N 1.31609 * 120.00344 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 119.99589 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46748 * 90.00539 * 20 18 16 22 22 H 1.48502 * 109.46756 * 210.00403 * 20 18 16 23 23 H 1.48498 * 109.46891 * 330.00190 * 20 18 16 24 24 C 1.52999 * 109.47159 * 59.99536 * 12 11 10 25 25 C 1.52997 * 109.47317 * 300.00546 * 24 12 11 26 26 N 1.46508 * 109.47264 * 240.00765 * 2 1 3 27 27 C 1.36346 * 125.62782 * 299.69316 * 26 2 1 28 28 C 1.34855 * 108.21358 * 179.82973 * 27 26 2 29 29 C 1.40890 * 107.41687 * 0.42161 * 28 27 26 30 30 C 1.34851 * 107.41832 * 359.73892 * 29 28 27 31 31 H 1.09000 * 109.46873 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47063 * 299.99399 * 1 2 3 33 33 H 1.08998 * 109.47360 * 59.99496 * 1 2 3 34 34 H 0.97004 * 119.99344 * 359.97438 * 6 4 2 35 35 H 1.09008 * 109.47071 * 59.99858 * 7 6 4 36 36 H 1.09000 * 109.47025 * 300.00099 * 7 6 4 37 37 H 1.08993 * 109.47662 * 299.99908 * 10 8 7 38 38 H 1.09002 * 109.47075 * 60.00414 * 10 8 7 39 39 H 1.09002 * 109.47153 * 60.00231 * 11 10 8 40 40 H 1.09001 * 109.47289 * 180.02562 * 11 10 8 41 41 H 1.09000 * 109.46791 * 294.99945 * 14 12 11 42 42 H 1.08998 * 109.47254 * 54.99840 * 14 12 11 43 43 H 0.96997 * 119.99996 * 359.97438 * 15 14 12 44 44 H 0.97002 * 120.00680 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.46929 * 179.97438 * 24 12 11 46 46 H 1.09002 * 109.46716 * 60.00455 * 24 12 11 47 47 H 1.09002 * 109.47153 * 299.99641 * 25 24 12 48 48 H 1.09001 * 109.46832 * 179.97438 * 25 24 12 49 49 H 1.07997 * 125.89169 * 359.95456 * 27 26 2 50 50 H 1.08001 * 126.29201 * 180.15988 * 28 27 26 51 51 H 1.08001 * 126.29541 * 179.73517 * 29 28 27 52 52 H 1.07998 * 125.89433 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7297 -1.6965 1.1190 6 7 1.7069 -0.2501 2.4545 7 6 2.1949 -0.9411 3.6506 8 6 1.6855 -0.2195 4.8999 9 1 1.9744 0.8305 4.8563 10 6 0.1605 -0.3266 4.9644 11 6 -0.3488 0.3944 6.2141 12 6 0.2610 -0.2514 7.4598 13 1 -0.0280 -1.3016 7.5031 14 6 -0.2489 0.4692 8.7095 15 7 0.2392 -0.2223 9.9053 16 6 -0.0912 0.2452 11.1493 17 1 -0.7112 1.1239 11.2488 18 6 0.3709 -0.4103 12.2822 19 7 1.1269 -1.4807 12.1609 20 14 -0.0792 0.2279 13.9793 21 1 -1.3427 -0.4099 14.4288 22 1 1.0084 -0.0998 14.9358 23 1 -0.2610 1.7006 13.9220 24 6 1.7859 -0.1445 7.3952 25 6 2.2953 -0.8655 6.1456 26 7 2.0184 -0.6905 -1.1963 27 6 1.7656 -1.9901 -1.5221 28 6 2.3799 -2.2585 -2.6922 29 6 3.0440 -1.0843 -3.0989 30 6 2.8054 -0.1415 -2.1648 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.1494 0.5387 2.5435 35 1 3.2849 -0.9414 3.6507 36 1 1.8312 -1.9686 3.6504 37 1 -0.2739 0.1332 4.0768 38 1 -0.1284 -1.3767 5.0082 39 1 -0.0598 1.4446 6.1708 40 1 -1.4352 0.3178 6.2603 41 1 0.1147 1.4968 8.7101 42 1 -1.3389 0.4695 8.7094 43 1 0.7964 -1.0112 9.8158 44 1 1.4495 -1.9390 12.9526 45 1 2.2202 -0.6042 8.2829 46 1 2.0749 0.9056 7.3520 47 1 2.0063 -1.9156 6.1889 48 1 3.3816 -0.7888 6.0994 49 1 1.1737 -2.6841 -0.9439 50 1 2.3687 -3.2015 -3.2185 51 1 3.6355 -0.9619 -3.9942 52 1 3.1745 0.8733 -2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733565057.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:03 Heat of formation + Delta-G solvation = -18.301381 kcal Electronic energy + Delta-G solvation = -28206.703158 eV Core-core repulsion = 24398.433484 eV Total energy + Delta-G solvation = -3808.269674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.32004 -40.75817 -39.78570 -36.98331 -35.67748 -35.20402 -33.59165 -31.89373 -31.42670 -30.24859 -29.58277 -28.11697 -26.12791 -25.19633 -23.89850 -23.40809 -22.02051 -21.53213 -21.34150 -20.80180 -20.42098 -19.15289 -18.77111 -17.95282 -16.89500 -16.67094 -16.48490 -16.11971 -15.69077 -15.39659 -15.26524 -15.24604 -14.83486 -14.79723 -14.48577 -14.43062 -14.25388 -14.05349 -13.48851 -13.33445 -13.27333 -13.19248 -13.03617 -13.01188 -12.95295 -12.80157 -12.67919 -12.59326 -12.36914 -12.09359 -11.95180 -11.88809 -11.77375 -11.31545 -11.13560 -11.00645 -10.88151 -10.79941 -10.16681 -9.51510 -9.00076 -8.98282 -7.95498 -5.23749 1.28173 1.43875 1.46132 1.48030 1.56488 1.85415 2.19046 2.27540 2.55670 3.37919 3.49463 3.64216 3.77128 3.79165 3.82768 3.83487 4.06750 4.13169 4.13873 4.30499 4.39470 4.46105 4.56575 4.57985 4.59450 4.63739 4.65029 4.67456 4.72685 4.76481 4.80574 4.84147 4.95445 5.08901 5.10943 5.12147 5.19566 5.24705 5.29440 5.31778 5.37111 5.41691 5.44673 5.45695 5.48797 5.61014 5.68096 6.11552 6.27166 6.31441 6.36942 6.56530 7.11580 7.33180 8.11730 8.34087 9.28103 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.041798 B = 0.001656 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.729396 B =16902.768131 C =17220.100663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.116 3.884 3 H 0.156 0.844 4 C 0.498 3.502 5 O -0.572 6.572 6 N -0.704 5.704 7 C 0.131 3.869 8 C -0.083 4.083 9 H 0.094 0.906 10 C -0.106 4.106 11 C -0.103 4.103 12 C -0.086 4.086 13 H 0.052 0.948 14 C 0.153 3.847 15 N -0.745 5.745 16 C -0.247 4.247 17 H 0.075 0.925 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.974 3.026 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.269 1.269 24 C -0.103 4.103 25 C -0.107 4.107 26 N -0.437 5.437 27 C -0.002 4.002 28 C -0.230 4.230 29 C -0.220 4.220 30 C -0.020 4.020 31 H 0.056 0.944 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.419 0.581 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.019 0.981 42 H 0.015 0.985 43 H 0.373 0.627 44 H 0.251 0.749 45 H 0.035 0.965 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.066 0.934 49 H 0.152 0.848 50 H 0.136 0.864 51 H 0.145 0.855 52 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.258 7.639 -30.863 31.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.010 3.990 3 H 0.174 0.826 4 C 0.283 3.717 5 O -0.450 6.450 6 N -0.358 5.358 7 C 0.007 3.993 8 C -0.102 4.102 9 H 0.112 0.888 10 C -0.143 4.143 11 C -0.141 4.141 12 C -0.105 4.105 13 H 0.070 0.930 14 C 0.027 3.973 15 N -0.388 5.388 16 C -0.379 4.379 17 H 0.093 0.907 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.803 3.197 21 H -0.214 1.214 22 H -0.222 1.222 23 H -0.194 1.194 24 C -0.140 4.140 25 C -0.145 4.145 26 N -0.114 5.114 27 C -0.132 4.132 28 C -0.254 4.254 29 C -0.244 4.244 30 C -0.149 4.149 31 H 0.075 0.925 32 H 0.127 0.873 33 H 0.105 0.895 34 H 0.257 0.743 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.037 0.963 42 H 0.033 0.967 43 H 0.205 0.795 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.169 0.831 50 H 0.154 0.846 51 H 0.163 0.837 52 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.978 7.256 -30.511 31.378 hybrid contribution 0.080 -0.393 1.538 1.589 sum -0.898 6.863 -28.973 29.789 Atomic orbital electron populations 1.22161 0.89200 1.03923 1.05911 1.21550 0.98224 0.98145 0.81075 0.82623 1.21134 0.80098 0.84649 0.85829 1.90789 1.39189 1.27983 1.87070 1.45814 1.53224 1.32335 1.04383 1.21313 0.98640 0.96042 0.83292 1.21296 0.96119 1.00740 0.92049 0.88800 1.21570 0.93974 1.00857 0.97911 1.21464 1.00047 0.99986 0.92584 1.21247 0.95664 0.99161 0.94425 0.92951 1.20908 0.95691 0.94660 0.86079 1.42622 1.61378 1.33348 1.01428 1.19671 1.24749 1.08361 0.85076 0.90748 1.25571 1.01154 0.98546 1.01624 1.69816 1.41008 1.22334 1.28939 0.85137 0.76805 0.78113 0.79694 1.21410 1.22199 1.19360 1.21399 0.94977 1.00549 0.97124 1.21453 1.00168 0.99402 0.93449 1.43922 1.39885 1.10075 1.17475 1.21729 1.06382 0.86494 0.98579 1.21123 1.05628 1.00065 0.98617 1.21151 1.07017 0.93999 1.02264 1.22295 1.00570 1.00972 0.91079 0.92465 0.87288 0.89472 0.74272 0.92400 0.92555 0.89152 0.92610 0.90745 0.91525 0.96304 0.96678 0.79469 0.94066 0.94632 0.91880 0.92547 0.91499 0.83072 0.84572 0.83702 0.79381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.14 71.98 0.66 -0.15 16 2 C 0.12 1.14 3.36 44.24 0.15 1.29 16 3 H 0.16 0.50 8.06 -2.39 -0.02 0.48 16 4 C 0.50 8.05 7.11 87.66 0.62 8.68 16 5 O -0.57 -15.63 15.44 -3.05 -0.05 -15.68 16 6 N -0.70 -7.75 5.18 -463.05 -2.40 -10.15 16 7 C 0.13 2.07 5.06 86.38 0.44 2.50 16 8 C -0.08 -1.24 2.23 -10.79 -0.02 -1.27 16 9 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 10 C -0.11 -1.52 5.08 30.59 0.16 -1.36 16 11 C -0.10 -2.03 5.20 30.60 0.16 -1.87 16 12 C -0.09 -2.55 2.22 -10.79 -0.02 -2.58 16 13 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 14 C 0.15 5.98 5.65 86.38 0.49 6.47 16 15 N -0.75 -38.17 5.33 -343.44 -1.83 -40.00 16 16 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 17 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 19 N -0.97 -60.01 13.06 21.65 0.28 -59.72 16 20 Si 0.97 46.35 29.55 68.60 2.03 48.38 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 C -0.10 -2.97 5.08 30.59 0.16 -2.81 16 25 C -0.11 -2.33 5.20 30.59 0.16 -2.17 16 26 N -0.44 -7.24 2.40 -505.91 -1.22 -8.45 16 27 C 0.00 -0.04 9.56 83.21 0.80 0.76 16 28 C -0.23 -4.82 10.86 22.14 0.24 -4.58 16 29 C -0.22 -4.09 10.86 22.14 0.24 -3.85 16 30 C -0.02 -0.32 11.39 83.21 0.95 0.63 16 31 H 0.06 0.50 7.92 -2.39 -0.02 0.48 16 32 H 0.11 -0.03 7.56 -2.39 -0.02 -0.05 16 33 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.42 1.61 7.07 -92.71 -0.66 0.96 16 35 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 0.73 7.18 -2.39 -0.02 0.71 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.37 20.40 6.85 -92.71 -0.64 19.77 16 44 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 45 H 0.03 1.30 7.18 -2.39 -0.02 1.29 16 46 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 50 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 51 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 52 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -77.75 411.82 2.89 -74.86 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: -0.40 Total: 28.16 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 6.47 Total: -17.40 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -5.16 Total: -118.33 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.05 Total: -15.68 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -77.75 2.89 -74.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733565057.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.561 kcal (2) G-P(sol) polarization free energy of solvation -77.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds