Wall clock time and date at job start Tue Mar 31 2020 18:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46998 * 2 1 4 4 C 1.36933 * 120.00134 * 275.28160 * 3 2 1 5 5 H 1.07994 * 120.00283 * 36.73713 * 4 3 2 6 6 C 1.38820 * 119.99770 * 216.73897 * 4 3 2 7 7 N 1.31617 * 120.00111 * 21.66345 * 6 4 3 8 8 Si 1.86799 * 119.99973 * 201.66876 * 6 4 3 9 9 H 1.48496 * 109.47211 * 89.99364 * 8 6 4 10 10 H 1.48496 * 109.47193 * 209.99945 * 8 6 4 11 11 H 1.48503 * 109.46734 * 329.99613 * 8 6 4 12 12 C 1.46500 * 119.99583 * 95.28319 * 3 2 1 13 13 C 1.52997 * 109.47037 * 269.99766 * 12 3 2 14 14 C 1.53037 * 109.44970 * 295.06232 * 13 12 3 15 15 C 1.53197 * 109.31447 * 178.62056 * 14 13 12 16 16 N 1.46928 * 108.77442 * 54.63674 * 15 14 13 17 17 C 1.34771 * 120.63043 * 126.37229 * 16 15 14 18 18 O 1.21283 * 120.00011 * 356.41608 * 17 16 15 19 19 C 1.50697 * 120.00013 * 176.41747 * 17 16 15 20 20 H 1.09009 * 109.47220 * 53.90202 * 19 17 16 21 21 C 1.52997 * 109.47241 * 293.90403 * 19 17 16 22 22 N 1.46504 * 109.47394 * 173.90179 * 19 17 16 23 23 C 1.36338 * 125.63064 * 59.69392 * 22 19 17 24 24 C 1.34853 * 108.21713 * 179.83089 * 23 22 19 25 25 C 1.40891 * 107.41584 * 0.42785 * 24 23 22 26 26 C 1.34852 * 107.41572 * 359.73197 * 25 24 23 27 27 C 1.46922 * 118.73682 * 306.39250 * 16 15 14 28 28 C 1.53046 * 109.46299 * 174.99893 * 13 12 3 29 29 H 1.09001 * 109.47106 * 59.99866 * 1 2 3 30 30 H 1.09000 * 109.46951 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47030 * 299.99933 * 1 2 3 32 32 H 1.09008 * 109.47260 * 240.00290 * 2 1 3 33 33 H 1.09001 * 109.47106 * 120.00134 * 2 1 3 34 34 H 0.96999 * 119.99881 * 180.02562 * 7 6 4 35 35 H 1.09006 * 109.47209 * 149.99955 * 12 3 2 36 36 H 1.09001 * 109.47490 * 29.99512 * 12 3 2 37 37 H 1.09007 * 109.46195 * 55.03012 * 13 12 3 38 38 H 1.08998 * 109.50061 * 58.67011 * 14 13 12 39 39 H 1.09004 * 109.50075 * 298.57325 * 14 13 12 40 40 H 1.08999 * 109.58597 * 294.84777 * 15 14 13 41 41 H 1.09003 * 109.58951 * 174.42310 * 15 14 13 42 42 H 1.09002 * 109.47463 * 185.65224 * 21 19 17 43 43 H 1.08997 * 109.47411 * 305.65382 * 21 19 17 44 44 H 1.08998 * 109.47483 * 65.65673 * 21 19 17 45 45 H 1.07998 * 125.89526 * 359.96099 * 23 22 19 46 46 H 1.07997 * 126.29370 * 180.16107 * 24 23 22 47 47 H 1.07997 * 126.29284 * 179.73938 * 25 24 23 48 48 H 1.07998 * 125.88933 * 179.97438 * 26 25 24 49 49 H 1.09003 * 109.58785 * 173.39988 * 27 16 15 50 50 H 1.09008 * 109.58708 * 293.67705 * 27 16 15 51 51 H 1.09005 * 109.49439 * 61.42181 * 28 13 12 52 52 H 1.08995 * 109.52542 * 301.34312 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1436 2.0632 -1.1808 5 1 1.4190 1.9173 -1.9682 6 6 3.2022 2.9420 -1.3658 7 7 4.2914 2.8231 -0.6366 8 14 3.0806 4.2934 -2.6496 9 1 2.5008 5.5128 -2.0315 10 1 4.4353 4.6008 -3.1746 11 1 2.2091 3.8409 -3.7636 12 6 2.3726 2.0328 1.2634 13 6 1.1417 2.7385 1.8360 14 6 0.7217 3.8722 0.8977 15 6 -0.5311 4.5544 1.4563 16 7 -0.2615 4.9816 2.8360 17 6 -0.4646 6.2600 3.2110 18 8 -0.8112 7.0845 2.3919 19 6 -0.2610 6.6651 4.6482 20 1 0.7364 6.3673 4.9718 21 6 -1.3085 5.9765 5.5254 22 7 -0.4005 8.1183 4.7705 23 6 -1.5123 8.8393 4.4497 24 6 -1.2588 10.1396 4.7016 25 6 0.0612 10.2255 5.1868 26 6 0.5619 8.9738 5.2184 27 6 0.2340 3.9886 3.7989 28 6 1.4781 3.3128 3.2141 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 5.0309 3.4374 -0.7657 35 1 3.1611 2.7643 1.0864 36 1 2.7245 1.2836 1.9725 37 1 0.3242 2.0235 1.9303 38 1 0.5047 3.4655 -0.0900 39 1 1.5295 4.6002 0.8224 40 1 -1.3644 3.8518 1.4474 41 1 -0.7768 5.4235 0.8460 42 1 -1.2258 6.3457 6.5477 43 1 -2.3047 6.1938 5.1402 44 1 -1.1413 4.8995 5.5136 45 1 -2.4373 8.4381 4.0627 46 1 -1.9406 10.9641 4.5542 47 1 0.5771 11.1280 5.4796 48 1 1.5543 8.6969 5.5422 49 1 0.4931 4.4844 4.7344 50 1 -0.5379 3.2413 3.9831 51 1 2.2788 4.0461 3.1170 52 1 1.7999 2.5083 3.8754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733917943.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:18 Heat of formation + Delta-G solvation = 38.321628 kcal Electronic energy + Delta-G solvation = -30376.322826 eV Core-core repulsion = 26570.508510 eV Total energy + Delta-G solvation = -3805.814316 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.47423 -39.91290 -37.67879 -35.81132 -34.55194 -32.65650 -31.89676 -30.88239 -29.43693 -28.92646 -28.64741 -26.87193 -25.03805 -23.93737 -23.01979 -22.32957 -20.81508 -20.49860 -20.20530 -19.60423 -18.84014 -17.41498 -17.12188 -16.67130 -15.74620 -15.40146 -14.90669 -14.53753 -14.25559 -14.06147 -13.90111 -13.75947 -13.62756 -13.54505 -13.24736 -13.01644 -12.76158 -12.66343 -12.49594 -12.36407 -12.30348 -12.12960 -12.02851 -11.84265 -11.63885 -11.38388 -11.16725 -10.96993 -10.81441 -10.57265 -10.45658 -10.31555 -10.12708 -9.92111 -9.86349 -9.56634 -9.45869 -8.59523 -8.54708 -8.46243 -8.06874 -6.58224 -5.80733 -3.37918 2.20645 2.48899 2.69267 3.13073 3.14509 3.35048 3.42694 3.45281 4.14922 4.42936 4.45637 4.50394 4.81505 4.91890 5.08501 5.15602 5.19224 5.26069 5.29628 5.33561 5.42738 5.48174 5.55328 5.62475 5.67019 5.68324 5.74506 5.88317 5.97157 5.97849 6.18138 6.23996 6.32177 6.33215 6.34949 6.35728 6.40513 6.51232 6.62179 6.78020 6.87560 6.94916 6.98140 7.04287 7.12773 7.23831 7.26569 7.29731 7.43511 7.69046 7.80030 8.07368 8.49622 9.18220 9.80913 10.39001 11.18138 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.003353 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.318525 B = 8349.215256 C = 9337.797725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.255 4.255 5 H 0.059 0.941 6 C 0.017 3.983 7 N -0.886 5.886 8 Si 0.885 3.115 9 H -0.284 1.284 10 H -0.291 1.291 11 H -0.277 1.277 12 C 0.151 3.849 13 C -0.102 4.102 14 C -0.114 4.114 15 C 0.109 3.891 16 N -0.599 5.599 17 C 0.501 3.499 18 O -0.526 6.526 19 C 0.115 3.885 20 H 0.120 0.880 21 C -0.161 4.161 22 N -0.432 5.432 23 C 0.021 3.979 24 C -0.213 4.213 25 C -0.198 4.198 26 C -0.021 4.021 27 C 0.104 3.896 28 C -0.131 4.131 29 H 0.048 0.952 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.031 0.969 34 H 0.254 0.746 35 H 0.095 0.905 36 H 0.021 0.979 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.154 0.846 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.158 0.842 49 H 0.076 0.924 50 H 0.070 0.930 51 H 0.065 0.935 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.413 3.724 15.138 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.384 4.384 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.528 5.528 8 Si 0.714 3.286 9 H -0.210 1.210 10 H -0.218 1.218 11 H -0.202 1.202 12 C 0.025 3.975 13 C -0.123 4.123 14 C -0.151 4.151 15 C -0.012 4.012 16 N -0.332 5.332 17 C 0.286 3.714 18 O -0.401 6.401 19 C 0.008 3.992 20 H 0.138 0.862 21 C -0.219 4.219 22 N -0.109 5.109 23 C -0.109 4.109 24 C -0.237 4.237 25 C -0.223 4.223 26 C -0.150 4.150 27 C -0.019 4.019 28 C -0.169 4.169 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.171 0.829 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.176 0.824 49 H 0.094 0.906 50 H 0.089 0.911 51 H 0.083 0.917 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.377 3.856 14.627 17.798 hybrid contribution 0.091 0.712 -0.692 0.998 sum -9.286 4.569 13.935 17.357 Atomic orbital electron populations 1.22369 1.00191 0.98807 1.01104 1.20827 0.91648 0.87511 0.98569 1.43757 1.75999 1.08091 1.02578 1.18918 1.05219 1.20375 0.93905 0.92335 1.25078 0.94202 1.01227 0.97807 1.69986 1.03640 1.36896 1.42303 0.86576 0.77083 0.83103 0.81831 1.21042 1.21764 1.20197 1.20964 0.94635 0.96343 0.85576 1.21824 1.01366 0.96815 0.92254 1.21871 0.95296 0.97071 1.00909 1.21881 0.98930 0.99705 0.80720 1.48130 1.64516 1.08139 1.12448 1.20505 0.78411 0.82574 0.89901 1.90756 1.46765 1.49819 1.52802 1.21266 1.03169 0.80054 0.94685 0.86215 1.22216 0.98492 1.01399 0.99763 1.43740 1.12327 1.04731 1.50102 1.21634 0.92065 0.91556 1.05636 1.20820 0.97776 0.95473 1.09665 1.20824 0.96332 0.96151 1.08968 1.21771 0.94860 0.89725 1.08603 1.21955 0.97250 0.91428 0.91267 1.21978 0.96381 1.00078 0.98511 0.93279 0.94760 0.93793 0.94029 0.95012 0.93631 0.88761 0.96109 0.92561 0.88282 0.92452 0.91879 0.89724 0.90467 0.91196 0.89587 0.82879 0.85020 0.84939 0.82448 0.90563 0.91132 0.91671 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 10.21 37.16 0.38 -2.42 16 2 C 0.14 2.80 6.44 -4.04 -0.03 2.77 16 3 N -0.58 -13.30 2.32 -173.23 -0.40 -13.70 16 4 C -0.25 -6.46 7.37 -15.06 -0.11 -6.58 16 5 H 0.06 1.52 7.92 -52.49 -0.42 1.10 16 6 C 0.02 0.46 4.96 -17.43 -0.09 0.37 16 7 N -0.89 -24.46 11.43 55.49 0.63 -23.82 16 8 Si 0.88 21.21 29.61 -169.99 -5.03 16.17 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.15 3.19 4.84 -4.04 -0.02 3.17 16 13 C -0.10 -1.72 2.36 -90.58 -0.21 -1.93 16 14 C -0.11 -2.09 4.95 -26.61 -0.13 -2.23 16 15 C 0.11 1.72 6.44 -3.71 -0.02 1.70 16 16 N -0.60 -8.21 2.97 -172.77 -0.51 -8.73 16 17 C 0.50 7.31 7.00 -10.99 -0.08 7.23 16 18 O -0.53 -9.86 14.73 5.55 0.08 -9.78 16 19 C 0.12 1.26 2.51 -69.08 -0.17 1.09 16 20 H 0.12 1.09 7.13 -51.92 -0.37 0.72 16 21 C -0.16 -1.28 8.81 37.16 0.33 -0.96 16 22 N -0.43 -5.53 2.44 -111.26 -0.27 -5.81 16 23 C 0.02 0.28 9.54 -16.75 -0.16 0.12 16 24 C -0.21 -2.79 10.86 -39.78 -0.43 -3.22 16 25 C -0.20 -2.49 10.86 -39.78 -0.43 -2.92 16 26 C -0.02 -0.26 11.39 -16.75 -0.19 -0.45 16 27 C 0.10 1.11 5.05 -3.72 -0.02 1.09 16 28 C -0.13 -1.75 5.36 -26.61 -0.14 -1.89 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.72 6.48 -51.93 -0.34 0.38 16 32 H 0.04 0.86 8.08 -51.92 -0.42 0.45 16 33 H 0.03 0.59 7.83 -51.93 -0.41 0.19 16 34 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.09 2.33 5.46 -51.93 -0.28 2.04 16 36 H 0.02 0.42 7.86 -51.93 -0.41 0.01 16 37 H 0.06 0.93 6.48 -51.92 -0.34 0.60 16 38 H 0.10 2.07 6.26 -51.93 -0.32 1.75 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.48 7.00 -51.93 -0.36 1.12 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 44 H 0.09 0.55 5.84 -51.93 -0.30 0.25 16 45 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 46 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 47 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 48 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 49 H 0.08 0.61 4.84 -51.93 -0.25 0.36 16 50 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 51 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 52 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 398.67 15.07 6.01 6.01 Total: -1.00 -30.75 398.67 -9.87 -40.63 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.85 Total: 4.08 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.53 Total: -5.05 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.55 Total: -52.06 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.75 -9.87 -40.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733917943.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.951 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds