Wall clock time and date at job start Tue Mar 31 2020 18:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46998 * 2 1 4 4 C 1.36933 * 120.00134 * 275.28160 * 3 2 1 5 5 H 1.07994 * 120.00283 * 36.73713 * 4 3 2 6 6 C 1.38820 * 119.99770 * 216.73897 * 4 3 2 7 7 N 1.31617 * 120.00111 * 21.66345 * 6 4 3 8 8 Si 1.86799 * 119.99973 * 201.66876 * 6 4 3 9 9 H 1.48496 * 109.47211 * 89.99364 * 8 6 4 10 10 H 1.48496 * 109.47193 * 209.99945 * 8 6 4 11 11 H 1.48503 * 109.46734 * 329.99613 * 8 6 4 12 12 C 1.46500 * 119.99583 * 95.28319 * 3 2 1 13 13 C 1.52997 * 109.47037 * 269.99766 * 12 3 2 14 14 C 1.53037 * 109.44970 * 295.06232 * 13 12 3 15 15 C 1.53197 * 109.31447 * 178.62056 * 14 13 12 16 16 N 1.46928 * 108.77442 * 54.63674 * 15 14 13 17 17 C 1.34771 * 120.63043 * 126.37229 * 16 15 14 18 18 O 1.21283 * 120.00011 * 356.41608 * 17 16 15 19 19 C 1.50697 * 120.00013 * 176.41747 * 17 16 15 20 20 H 1.09009 * 109.47220 * 53.90202 * 19 17 16 21 21 C 1.52997 * 109.47241 * 293.90403 * 19 17 16 22 22 N 1.46504 * 109.47394 * 173.90179 * 19 17 16 23 23 C 1.36338 * 125.63064 * 59.69392 * 22 19 17 24 24 C 1.34853 * 108.21713 * 179.83089 * 23 22 19 25 25 C 1.40891 * 107.41584 * 0.42785 * 24 23 22 26 26 C 1.34852 * 107.41572 * 359.73197 * 25 24 23 27 27 C 1.46922 * 118.73682 * 306.39250 * 16 15 14 28 28 C 1.53046 * 109.46299 * 174.99893 * 13 12 3 29 29 H 1.09001 * 109.47106 * 59.99866 * 1 2 3 30 30 H 1.09000 * 109.46951 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47030 * 299.99933 * 1 2 3 32 32 H 1.09008 * 109.47260 * 240.00290 * 2 1 3 33 33 H 1.09001 * 109.47106 * 120.00134 * 2 1 3 34 34 H 0.96999 * 119.99881 * 180.02562 * 7 6 4 35 35 H 1.09006 * 109.47209 * 149.99955 * 12 3 2 36 36 H 1.09001 * 109.47490 * 29.99512 * 12 3 2 37 37 H 1.09007 * 109.46195 * 55.03012 * 13 12 3 38 38 H 1.08998 * 109.50061 * 58.67011 * 14 13 12 39 39 H 1.09004 * 109.50075 * 298.57325 * 14 13 12 40 40 H 1.08999 * 109.58597 * 294.84777 * 15 14 13 41 41 H 1.09003 * 109.58951 * 174.42310 * 15 14 13 42 42 H 1.09002 * 109.47463 * 185.65224 * 21 19 17 43 43 H 1.08997 * 109.47411 * 305.65382 * 21 19 17 44 44 H 1.08998 * 109.47483 * 65.65673 * 21 19 17 45 45 H 1.07998 * 125.89526 * 359.96099 * 23 22 19 46 46 H 1.07997 * 126.29370 * 180.16107 * 24 23 22 47 47 H 1.07997 * 126.29284 * 179.73938 * 25 24 23 48 48 H 1.07998 * 125.88933 * 179.97438 * 26 25 24 49 49 H 1.09003 * 109.58785 * 173.39988 * 27 16 15 50 50 H 1.09008 * 109.58708 * 293.67705 * 27 16 15 51 51 H 1.09005 * 109.49439 * 61.42181 * 28 13 12 52 52 H 1.08995 * 109.52542 * 301.34312 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1436 2.0632 -1.1808 5 1 1.4190 1.9173 -1.9682 6 6 3.2022 2.9420 -1.3658 7 7 4.2914 2.8231 -0.6366 8 14 3.0806 4.2934 -2.6496 9 1 2.5008 5.5128 -2.0315 10 1 4.4353 4.6008 -3.1746 11 1 2.2091 3.8409 -3.7636 12 6 2.3726 2.0328 1.2634 13 6 1.1417 2.7385 1.8360 14 6 0.7217 3.8722 0.8977 15 6 -0.5311 4.5544 1.4563 16 7 -0.2615 4.9816 2.8360 17 6 -0.4646 6.2600 3.2110 18 8 -0.8112 7.0845 2.3919 19 6 -0.2610 6.6651 4.6482 20 1 0.7364 6.3673 4.9718 21 6 -1.3085 5.9765 5.5254 22 7 -0.4005 8.1183 4.7705 23 6 -1.5123 8.8393 4.4497 24 6 -1.2588 10.1396 4.7016 25 6 0.0612 10.2255 5.1868 26 6 0.5619 8.9738 5.2184 27 6 0.2340 3.9886 3.7989 28 6 1.4781 3.3128 3.2141 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 5.0309 3.4374 -0.7657 35 1 3.1611 2.7643 1.0864 36 1 2.7245 1.2836 1.9725 37 1 0.3242 2.0235 1.9303 38 1 0.5047 3.4655 -0.0900 39 1 1.5295 4.6002 0.8224 40 1 -1.3644 3.8518 1.4474 41 1 -0.7768 5.4235 0.8460 42 1 -1.2258 6.3457 6.5477 43 1 -2.3047 6.1938 5.1402 44 1 -1.1413 4.8995 5.5136 45 1 -2.4373 8.4381 4.0627 46 1 -1.9406 10.9641 4.5542 47 1 0.5771 11.1280 5.4796 48 1 1.5543 8.6969 5.5422 49 1 0.4931 4.4844 4.7344 50 1 -0.5379 3.2413 3.9831 51 1 2.2788 4.0461 3.1170 52 1 1.7999 2.5083 3.8754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733917943.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:16 Heat of formation + Delta-G solvation = 22.775019 kcal Electronic energy + Delta-G solvation = -30376.996978 eV Core-core repulsion = 26570.508510 eV Total energy + Delta-G solvation = -3806.488468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.43098 -41.02078 -39.06465 -37.33899 -35.51147 -34.00549 -33.73866 -32.05997 -30.66720 -30.14252 -29.58891 -28.37723 -26.36317 -25.29438 -24.18760 -23.64729 -22.14345 -21.70513 -21.42750 -20.76820 -19.96246 -18.59053 -18.33381 -18.19123 -16.91842 -16.78516 -16.39419 -15.86968 -15.57876 -15.46486 -15.22070 -14.99174 -14.79268 -14.51058 -14.39397 -14.31500 -14.06879 -13.96219 -13.68059 -13.37662 -13.24286 -13.17005 -13.12540 -13.00229 -12.96593 -12.80296 -12.67631 -12.63010 -12.32575 -12.18885 -12.04041 -11.91228 -11.69121 -11.54829 -11.22751 -11.04292 -10.86587 -10.43471 -9.71694 -9.54327 -9.02220 -8.50090 -7.78978 -5.38667 1.22236 1.36748 1.41020 1.43909 1.45953 1.77947 2.15561 2.17180 2.47475 3.20793 3.25388 3.64744 3.72323 3.76660 3.94252 4.01041 4.10914 4.15987 4.21841 4.37166 4.39036 4.47701 4.49921 4.54614 4.61594 4.70239 4.73122 4.75573 4.79970 4.81474 4.89008 4.91333 4.97405 5.05150 5.08147 5.15518 5.25597 5.33211 5.36201 5.39304 5.42017 5.43894 5.51320 5.64493 5.68314 5.76309 5.97925 6.10245 6.25672 6.32326 6.49027 6.50334 6.97526 7.22920 7.95329 8.44453 9.13895 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.003353 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.318525 B = 8349.215256 C = 9337.797725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.136 3.864 3 N -0.599 5.599 4 C -0.241 4.241 5 H 0.050 0.950 6 C -0.023 4.023 7 N -0.913 5.913 8 Si 0.926 3.074 9 H -0.296 1.296 10 H -0.296 1.296 11 H -0.269 1.269 12 C 0.152 3.848 13 C -0.089 4.089 14 C -0.101 4.101 15 C 0.119 3.881 16 N -0.597 5.597 17 C 0.495 3.505 18 O -0.577 6.577 19 C 0.118 3.882 20 H 0.146 0.854 21 C -0.154 4.154 22 N -0.438 5.438 23 C 0.002 3.998 24 C -0.229 4.229 25 C -0.216 4.216 26 C -0.026 4.026 27 C 0.104 3.896 28 C -0.126 4.126 29 H 0.031 0.969 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.024 0.976 33 H 0.047 0.953 34 H 0.247 0.753 35 H 0.056 0.944 36 H 0.028 0.972 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.016 0.984 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.110 0.890 45 H 0.152 0.848 46 H 0.141 0.859 47 H 0.148 0.852 48 H 0.185 0.815 49 H 0.114 0.886 50 H 0.101 0.899 51 H 0.044 0.956 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.659 2.346 18.086 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.011 3.989 3 N -0.320 5.320 4 C -0.372 4.372 5 H 0.067 0.933 6 C -0.220 4.220 7 N -0.558 5.558 8 Si 0.756 3.244 9 H -0.223 1.223 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.026 3.974 13 C -0.110 4.110 14 C -0.140 4.140 15 C -0.004 4.004 16 N -0.330 5.330 17 C 0.282 3.718 18 O -0.457 6.457 19 C 0.012 3.988 20 H 0.163 0.837 21 C -0.211 4.211 22 N -0.115 5.115 23 C -0.128 4.128 24 C -0.253 4.253 25 C -0.240 4.240 26 C -0.155 4.155 27 C -0.017 4.017 28 C -0.165 4.165 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.035 0.965 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.129 0.871 45 H 0.170 0.830 46 H 0.159 0.841 47 H 0.166 0.834 48 H 0.202 0.798 49 H 0.132 0.868 50 H 0.119 0.881 51 H 0.063 0.937 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.640 2.435 17.597 20.707 hybrid contribution 0.484 1.078 -1.644 2.025 sum -10.156 3.513 15.952 19.234 Atomic orbital electron populations 1.22167 0.97429 1.00585 1.00766 1.20962 0.93673 0.85772 0.98540 1.43997 1.76224 1.09447 1.02368 1.18986 1.03991 1.19732 0.94499 0.93266 1.25456 0.94348 1.02863 0.99345 1.70081 1.04158 1.37640 1.43932 0.85905 0.76583 0.81216 0.80704 1.22343 1.22269 1.19349 1.20910 0.95528 0.95764 0.85197 1.21606 0.99583 0.96032 0.93739 1.21642 0.95237 0.96792 1.00315 1.21586 0.97949 0.98816 0.82000 1.48199 1.64100 1.08754 1.11909 1.21249 0.77217 0.82075 0.91230 1.90736 1.49086 1.51238 1.54620 1.21495 1.05620 0.79407 0.92294 0.83651 1.22237 0.96808 1.02489 0.99568 1.43941 1.12090 1.05602 1.49858 1.21756 0.92652 0.92056 1.06351 1.21124 0.98539 0.95858 1.09767 1.21151 0.96329 0.97215 1.09351 1.22286 0.95689 0.89662 1.07845 1.22246 0.96566 0.91508 0.91410 1.21933 0.97309 1.00545 0.96710 0.94939 0.91885 0.92746 0.95703 0.93428 0.94345 0.92602 0.95339 0.90991 0.91356 0.96526 0.89597 0.92310 0.88949 0.92199 0.87118 0.83024 0.84123 0.83432 0.79836 0.86785 0.88104 0.93700 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 10.21 71.98 0.73 -3.96 16 2 C 0.14 5.21 6.44 86.38 0.56 5.77 16 3 N -0.60 -27.27 2.32 -701.99 -1.63 -28.89 16 4 C -0.24 -12.52 7.37 84.04 0.62 -11.90 16 5 H 0.05 2.62 7.92 -2.91 -0.02 2.59 16 6 C -0.02 -1.23 4.96 84.86 0.42 -0.81 16 7 N -0.91 -52.15 11.43 21.65 0.25 -51.91 16 8 Si 0.93 45.21 29.61 68.60 2.03 47.24 16 9 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 10 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 11 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 12 C 0.15 6.35 4.84 86.38 0.42 6.77 16 13 C -0.09 -2.87 2.36 -10.77 -0.03 -2.89 16 14 C -0.10 -3.81 4.95 30.67 0.15 -3.65 16 15 C 0.12 3.70 6.44 86.36 0.56 4.26 16 16 N -0.60 -15.10 2.97 -818.90 -2.43 -17.53 16 17 C 0.49 13.75 7.00 87.66 0.61 14.37 16 18 O -0.58 -21.97 14.73 -3.04 -0.04 -22.02 16 19 C 0.12 2.23 2.51 44.24 0.11 2.34 16 20 H 0.15 2.00 7.13 -2.38 -0.02 1.99 16 21 C -0.15 -1.82 8.81 71.98 0.63 -1.19 16 22 N -0.44 -10.50 2.44 -505.91 -1.24 -11.73 16 23 C 0.00 0.05 9.54 83.21 0.79 0.84 16 24 C -0.23 -5.92 10.86 22.14 0.24 -5.68 16 25 C -0.22 -5.20 10.86 22.14 0.24 -4.96 16 26 C -0.03 -0.60 11.39 83.21 0.95 0.35 16 27 C 0.10 1.74 5.05 86.36 0.44 2.18 16 28 C -0.13 -2.99 5.36 30.67 0.16 -2.82 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.58 6.48 -2.39 -0.02 1.57 16 32 H 0.02 1.01 8.08 -2.38 -0.02 1.00 16 33 H 0.05 1.67 7.83 -2.39 -0.02 1.65 16 34 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 35 H 0.06 2.83 5.46 -2.38 -0.01 2.82 16 36 H 0.03 1.12 7.86 -2.39 -0.02 1.10 16 37 H 0.07 2.13 6.48 -2.38 -0.02 2.12 16 38 H 0.07 2.95 6.26 -2.39 -0.01 2.94 16 39 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.06 2.14 7.00 -2.39 -0.02 2.12 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.87 8.08 -2.39 -0.02 0.85 16 44 H 0.11 0.76 5.84 -2.39 -0.01 0.75 16 45 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 46 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 47 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 48 H 0.18 2.99 8.06 -2.91 -0.02 2.96 16 49 H 0.11 1.13 4.84 -2.39 -0.01 1.12 16 50 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 51 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 52 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -71.75 398.67 5.43 -66.31 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.88 Total: 19.52 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 7.61 Total: -0.99 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -5.05 Total: -110.07 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.04 Total: -22.02 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -71.75 5.43 -66.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733917943.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.088 kcal (2) G-P(sol) polarization free energy of solvation -71.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds