Wall clock time and date at job start Tue Mar 31 2020 18:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47017 * 2 1 4 4 C 1.36938 * 119.99732 * 275.62969 * 3 2 1 5 5 H 1.08001 * 120.00106 * 41.62575 * 4 3 2 6 6 C 1.38812 * 119.99919 * 221.63372 * 4 3 2 7 7 N 1.31619 * 120.00136 * 6.73889 * 6 4 3 8 8 Si 1.86796 * 119.99856 * 186.74451 * 6 4 3 9 9 H 1.48506 * 109.47349 * 89.99845 * 8 6 4 10 10 H 1.48505 * 109.47148 * 209.99684 * 8 6 4 11 11 H 1.48500 * 109.47413 * 329.99488 * 8 6 4 12 12 C 1.46501 * 120.00103 * 95.63071 * 3 2 1 13 13 C 1.52994 * 109.46923 * 269.99762 * 12 3 2 14 14 C 1.53043 * 109.46012 * 175.00263 * 13 12 3 15 15 C 1.53199 * 109.31383 * 181.37429 * 14 13 12 16 16 N 1.46926 * 108.77100 * 305.36597 * 15 14 13 17 17 C 1.34778 * 120.62230 * 233.58355 * 16 15 14 18 18 O 1.21283 * 120.00471 * 4.89901 * 17 16 15 19 19 C 1.50707 * 119.99763 * 184.89594 * 17 16 15 20 20 H 1.09002 * 109.46891 * 34.21021 * 19 17 16 21 21 C 1.52994 * 109.47051 * 154.21303 * 19 17 16 22 22 N 1.46503 * 109.47219 * 274.21492 * 19 17 16 23 23 C 1.36339 * 125.63611 * 119.99708 * 22 19 17 24 24 C 1.34859 * 108.21797 * 180.25283 * 23 22 19 25 25 C 1.40899 * 107.41311 * 359.63956 * 24 23 22 26 26 C 1.34849 * 107.41491 * 0.36236 * 25 24 23 27 27 C 1.46922 * 118.74486 * 53.86021 * 16 15 14 28 28 C 1.53038 * 109.45198 * 295.06347 * 13 12 3 29 29 H 1.09000 * 109.47081 * 60.00620 * 1 2 3 30 30 H 1.09001 * 109.46707 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47163 * 300.00270 * 1 2 3 32 32 H 1.09001 * 109.47163 * 239.99730 * 2 1 3 33 33 H 1.09003 * 109.47041 * 119.99904 * 2 1 3 34 34 H 0.96995 * 120.00496 * 180.02562 * 7 6 4 35 35 H 1.08994 * 109.46976 * 149.99813 * 12 3 2 36 36 H 1.08998 * 109.47121 * 29.99884 * 12 3 2 37 37 H 1.09003 * 109.46414 * 55.02952 * 13 12 3 38 38 H 1.08994 * 109.49908 * 61.42203 * 14 13 12 39 39 H 1.09005 * 109.51938 * 301.33744 * 14 13 12 40 40 H 1.08993 * 109.58599 * 185.57277 * 15 14 13 41 41 H 1.09002 * 109.70268 * 65.21929 * 15 14 13 42 42 H 1.09001 * 109.47203 * 55.21518 * 21 19 17 43 43 H 1.09013 * 109.46817 * 175.20889 * 21 19 17 44 44 H 1.08996 * 109.47595 * 295.21008 * 21 19 17 45 45 H 1.07998 * 125.89324 * 359.97438 * 23 22 19 46 46 H 1.07992 * 126.29076 * 179.77919 * 24 23 22 47 47 H 1.08000 * 126.28780 * 180.14105 * 25 24 23 48 48 H 1.08006 * 125.88310 * 179.74143 * 26 25 24 49 49 H 1.08999 * 109.58496 * 65.92524 * 27 16 15 50 50 H 1.09004 * 109.58855 * 186.35172 * 27 16 15 51 51 H 1.09006 * 109.50095 * 298.57312 * 28 13 12 52 52 H 1.09007 * 109.49977 * 58.66933 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1368 2.0655 -1.1802 5 1 1.3665 1.9820 -1.9326 6 6 3.2472 2.8663 -1.4097 7 7 4.2473 2.8657 -0.5540 8 14 3.3219 3.9451 -2.9329 9 1 2.7355 5.2748 -2.6270 10 1 4.7367 4.1126 -3.3519 11 1 2.5530 3.3056 -4.0306 12 6 2.3799 2.0304 1.2626 13 6 1.1523 2.7349 1.8436 14 6 1.4967 3.3065 3.2208 15 6 0.2558 3.9812 3.8141 16 7 -0.2452 4.9759 2.8559 17 6 -0.4470 6.2535 3.2350 18 8 -0.1315 6.6124 4.3497 19 6 -1.0645 7.2361 2.2736 20 1 -1.7934 6.7221 1.6469 21 6 -1.7617 8.3486 3.0591 22 7 -0.0177 7.8168 1.4291 23 6 0.0440 7.7328 0.0697 24 6 1.1508 8.3834 -0.3432 25 6 1.7915 8.8947 0.8028 26 6 1.0561 8.5302 1.8728 27 6 -0.5280 4.5502 1.4785 28 6 0.7269 3.8704 0.9099 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0230 3.4255 -0.7141 35 1 3.1673 2.7621 1.0824 36 1 2.7359 1.2797 1.9682 37 1 0.3354 2.0198 1.9412 38 1 2.2967 4.0400 3.1206 39 1 1.8223 2.5006 3.8787 40 1 0.5203 4.4751 4.7490 41 1 -0.5149 3.2335 4.0013 42 1 -1.0520 8.8067 3.7480 43 1 -2.1347 9.1034 2.3666 44 1 -2.5951 7.9285 3.6221 45 1 -0.6680 7.2280 -0.5664 46 1 1.4835 8.4942 -1.3646 47 1 2.7056 9.4695 0.8212 48 1 1.2797 8.7627 2.9035 49 1 -1.3604 3.8466 1.4771 50 1 -0.7808 5.4198 0.8718 51 1 1.5342 4.5986 0.8314 52 1 0.5042 3.4656 -0.0774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733917944.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:20 Heat of formation + Delta-G solvation = 21.656220 kcal Electronic energy + Delta-G solvation = -31205.844281 eV Core-core repulsion = 27399.307299 eV Total energy + Delta-G solvation = -3806.536982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.50420 -40.96729 -39.12832 -37.31832 -35.31440 -34.06581 -33.69732 -31.99845 -30.51699 -30.32050 -29.66691 -28.45035 -26.28487 -25.39122 -24.07678 -23.62277 -22.16144 -21.65376 -21.48274 -20.83642 -19.86667 -18.67476 -18.52186 -18.08785 -17.04948 -16.83260 -16.07953 -15.80957 -15.51554 -15.49209 -15.26157 -15.01429 -14.74230 -14.60670 -14.46913 -14.30878 -13.99785 -13.86721 -13.66501 -13.45498 -13.23018 -13.17085 -13.07011 -12.99240 -12.91386 -12.78081 -12.64741 -12.53542 -12.29277 -12.18456 -12.06251 -11.91966 -11.60464 -11.55459 -11.28332 -11.02573 -10.94295 -10.41888 -9.73479 -9.56749 -9.09974 -8.38055 -7.65333 -5.43494 0.99290 1.32287 1.47801 1.50614 1.56072 1.88130 2.11343 2.21257 2.54383 3.20476 3.37498 3.56785 3.71909 3.76305 3.95337 4.04885 4.07404 4.14805 4.19932 4.31989 4.39291 4.47680 4.51598 4.55797 4.62417 4.64109 4.71723 4.75620 4.75820 4.83071 4.87441 4.90274 4.93515 5.08164 5.10197 5.16473 5.26048 5.34004 5.35255 5.37200 5.41026 5.42029 5.53211 5.64536 5.70367 5.80038 6.02326 6.08684 6.20813 6.27331 6.40668 6.62068 6.91014 7.30787 7.98180 8.50813 9.22865 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010780 B = 0.005068 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.730757 B = 5523.042291 C = 7157.987619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.136 3.864 3 N -0.599 5.599 4 C -0.238 4.238 5 H 0.056 0.944 6 C -0.030 4.030 7 N -0.923 5.923 8 Si 0.941 3.059 9 H -0.280 1.280 10 H -0.303 1.303 11 H -0.268 1.268 12 C 0.147 3.853 13 C -0.087 4.087 14 C -0.119 4.119 15 C 0.118 3.882 16 N -0.596 5.596 17 C 0.503 3.497 18 O -0.567 6.567 19 C 0.117 3.883 20 H 0.145 0.855 21 C -0.143 4.143 22 N -0.437 5.437 23 C -0.009 4.009 24 C -0.221 4.221 25 C -0.216 4.216 26 C -0.018 4.018 27 C 0.109 3.891 28 C -0.096 4.096 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.027 0.973 33 H 0.039 0.961 34 H 0.245 0.755 35 H 0.071 0.929 36 H 0.012 0.988 37 H 0.068 0.932 38 H 0.032 0.968 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.188 0.812 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.157 0.843 49 H 0.095 0.905 50 H 0.088 0.912 51 H 0.019 0.981 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.960 5.986 5.642 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.010 3.990 3 N -0.320 5.320 4 C -0.369 4.369 5 H 0.073 0.927 6 C -0.226 4.226 7 N -0.568 5.568 8 Si 0.770 3.230 9 H -0.207 1.207 10 H -0.230 1.230 11 H -0.193 1.193 12 C 0.020 3.980 13 C -0.107 4.107 14 C -0.158 4.158 15 C -0.004 4.004 16 N -0.328 5.328 17 C 0.290 3.710 18 O -0.446 6.446 19 C 0.012 3.988 20 H 0.162 0.838 21 C -0.200 4.200 22 N -0.115 5.115 23 C -0.138 4.138 24 C -0.246 4.246 25 C -0.240 4.240 26 C -0.147 4.147 27 C -0.013 4.013 28 C -0.134 4.134 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.030 0.970 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.205 0.795 46 H 0.154 0.846 47 H 0.156 0.844 48 H 0.175 0.825 49 H 0.113 0.887 50 H 0.106 0.894 51 H 0.038 0.962 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.902 6.052 6.425 17.319 hybrid contribution 1.176 0.534 -0.908 1.579 sum -13.725 6.586 5.516 16.192 Atomic orbital electron populations 1.22155 0.97241 1.00554 1.00861 1.20965 0.93832 0.85975 0.98214 1.43915 1.76505 1.09134 1.02482 1.19028 1.00258 1.22629 0.94972 0.92686 1.25872 0.94934 1.02538 0.99258 1.69899 1.07416 1.42072 1.37408 0.85664 0.76220 0.79813 0.81283 1.20694 1.23035 1.19250 1.21028 0.95901 0.95917 0.85105 1.21574 0.99619 0.96546 0.93008 1.21837 0.96873 0.99606 0.97520 1.21648 0.96196 0.90705 0.91896 1.48296 1.63128 1.08792 1.12590 1.21035 0.78755 0.83012 0.88194 1.90664 1.52430 1.78133 1.23326 1.21699 0.89554 0.94800 0.92751 0.83791 1.21964 1.00812 0.96932 1.00324 1.44006 1.19943 1.41659 1.05932 1.22214 1.02348 1.06470 0.82750 1.21119 0.98129 1.06220 0.99098 1.21103 1.02351 1.07913 0.92674 1.21836 0.91014 1.02433 0.99461 1.22134 0.98406 1.00400 0.80373 1.21624 0.95420 0.96392 0.99944 0.94251 0.92069 0.93067 0.95493 0.94271 0.94551 0.91115 0.96977 0.91390 0.94881 0.90012 0.90282 0.88982 0.92280 0.89483 0.88909 0.79477 0.84615 0.84437 0.82511 0.88733 0.89428 0.96246 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 10.20 71.98 0.73 -3.91 16 2 C 0.14 5.31 6.44 86.38 0.56 5.86 16 3 N -0.60 -27.57 2.31 -702.01 -1.62 -29.19 16 4 C -0.24 -12.03 7.39 84.03 0.62 -11.41 16 5 H 0.06 2.77 7.84 -2.91 -0.02 2.75 16 6 C -0.03 -1.58 5.25 84.86 0.45 -1.13 16 7 N -0.92 -53.04 10.91 21.65 0.24 -52.80 16 8 Si 0.94 43.61 29.56 68.60 2.03 45.64 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 C 0.15 6.54 4.82 86.38 0.42 6.95 16 13 C -0.09 -3.04 2.36 -10.77 -0.03 -3.07 16 14 C -0.12 -3.78 5.36 30.68 0.16 -3.62 16 15 C 0.12 3.15 6.44 86.36 0.56 3.71 16 16 N -0.60 -16.09 2.97 -818.04 -2.43 -18.52 16 17 C 0.50 13.92 6.75 87.66 0.59 14.52 16 18 O -0.57 -19.03 15.42 -3.04 -0.05 -19.08 16 19 C 0.12 2.48 2.40 44.24 0.11 2.58 16 20 H 0.14 2.17 6.60 -2.39 -0.02 2.15 16 21 C -0.14 -2.51 8.82 71.98 0.64 -1.87 16 22 N -0.44 -11.24 2.55 -505.90 -1.29 -12.53 16 23 C -0.01 -0.24 10.31 83.22 0.86 0.62 16 24 C -0.22 -6.63 10.86 22.14 0.24 -6.39 16 25 C -0.22 -6.59 10.86 22.14 0.24 -6.35 16 26 C -0.02 -0.53 10.60 83.21 0.88 0.35 16 27 C 0.11 2.75 6.19 86.51 0.54 3.29 16 28 C -0.10 -3.38 4.97 30.82 0.15 -3.23 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.52 6.50 -2.39 -0.02 1.50 16 32 H 0.03 1.11 8.09 -2.39 -0.02 1.09 16 33 H 0.04 1.46 7.83 -2.39 -0.02 1.44 16 34 H 0.24 14.01 8.31 -92.71 -0.77 13.24 16 35 H 0.07 3.81 5.23 -2.39 -0.01 3.80 16 36 H 0.01 0.53 7.86 -2.39 -0.02 0.51 16 37 H 0.07 2.20 6.50 -2.39 -0.02 2.18 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.08 2.26 7.00 -2.39 -0.02 2.25 16 41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.06 1.28 7.60 -2.39 -0.02 1.26 16 43 H 0.09 1.27 8.14 -2.38 -0.02 1.26 16 44 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.19 3.66 7.95 -2.91 -0.02 3.64 16 46 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 47 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 48 H 0.16 4.48 8.06 -2.91 -0.02 4.45 16 49 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.09 1.95 4.51 -2.39 -0.01 1.94 16 51 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 52 H 0.08 3.05 6.26 -2.38 -0.01 3.04 16 Total: -1.00 -65.56 400.59 5.47 -60.09 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.88 Total: 29.49 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 7.71 Total: -3.09 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -5.10 Total: -113.05 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.05 Total: -19.08 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -65.56 5.47 -60.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733917944.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.745 kcal (2) G-P(sol) polarization free energy of solvation -65.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds