Wall clock time and date at job start Tue Mar 31 2020 17:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47447 * 2 1 4 4 C 1.36447 * 124.84741 * 89.97736 * 3 2 1 5 5 C 1.50700 * 125.57409 * 359.97438 * 4 3 2 6 6 C 1.34485 * 108.85745 * 179.97438 * 4 3 2 7 7 C 1.46689 * 106.33090 * 359.97438 * 6 4 3 8 8 C 1.47266 * 126.94185 * 179.73628 * 7 6 4 9 9 O 1.21628 * 119.99961 * 186.34859 * 8 7 6 10 10 N 1.34777 * 120.00138 * 6.34349 * 8 7 6 11 11 C 1.47429 * 125.64580 * 5.91328 * 10 8 7 12 12 C 1.55127 * 104.71859 * 155.81347 * 11 10 8 13 13 C 1.55156 * 101.48750 * 37.29548 * 12 11 10 14 14 C 1.47014 * 125.65051 * 186.22000 * 10 8 7 15 15 H 1.09011 * 109.88097 * 300.44201 * 14 10 8 16 16 C 1.53002 * 109.88493 * 61.60574 * 14 10 8 17 17 N 1.46503 * 109.46998 * 304.25401 * 16 14 10 18 18 C 1.46500 * 119.99890 * 278.01484 * 17 16 14 19 19 C 1.36931 * 119.99796 * 98.01458 * 17 16 14 20 20 H 1.08004 * 120.00322 * 0.69868 * 19 17 16 21 21 C 1.38817 * 119.99851 * 180.69724 * 19 17 16 22 22 N 1.31612 * 120.00115 * 32.27861 * 21 19 17 23 23 Si 1.86801 * 119.99824 * 212.28750 * 21 19 17 24 24 H 1.48497 * 109.47475 * 94.99399 * 23 21 19 25 25 H 1.48511 * 109.46656 * 214.99660 * 23 21 19 26 26 H 1.48498 * 109.47183 * 334.98736 * 23 21 19 27 27 C 1.34652 * 124.85330 * 269.97524 * 3 2 1 28 28 C 1.50703 * 125.80250 * 0.02562 * 27 3 2 29 29 H 1.09011 * 109.47125 * 59.99321 * 1 2 3 30 30 H 1.08995 * 109.47545 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46918 * 300.00215 * 1 2 3 32 32 H 1.09005 * 109.46768 * 240.00129 * 2 1 3 33 33 H 1.08998 * 109.46873 * 120.00627 * 2 1 3 34 34 H 1.09001 * 109.46799 * 269.99941 * 5 4 3 35 35 H 1.08997 * 109.46836 * 30.00126 * 5 4 3 36 36 H 1.08996 * 109.47256 * 149.99912 * 5 4 3 37 37 H 1.08002 * 126.84029 * 180.02562 * 6 4 3 38 38 H 1.08995 * 110.36271 * 274.74583 * 11 10 8 39 39 H 1.09003 * 110.36381 * 37.06838 * 11 10 8 40 40 H 1.08997 * 111.19808 * 279.19068 * 12 11 10 41 41 H 1.09008 * 110.93751 * 155.29142 * 12 11 10 42 42 H 1.09002 * 110.71854 * 205.96227 * 13 12 11 43 43 H 1.09004 * 110.71830 * 82.69100 * 13 12 11 44 44 H 1.09000 * 109.46884 * 64.25392 * 16 14 10 45 45 H 1.09000 * 109.47224 * 184.25150 * 16 14 10 46 46 H 1.09002 * 109.46836 * 95.27134 * 18 17 16 47 47 H 1.08992 * 109.47040 * 215.27078 * 18 17 16 48 48 H 1.09002 * 109.47452 * 335.27426 * 18 17 16 49 49 H 0.96995 * 120.00118 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.47122 * 269.99946 * 28 27 3 51 51 H 1.08995 * 109.47254 * 30.00003 * 28 27 3 52 52 H 1.09003 * 109.47190 * 149.99998 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2779 2.1163 1.1198 5 6 2.1085 1.6406 2.5397 6 6 2.7095 3.3349 0.7493 7 6 2.7139 3.3426 -0.7175 8 6 3.1041 4.4587 -1.5956 9 8 2.9507 4.3682 -2.7988 10 7 3.6313 5.5803 -1.0660 11 6 3.9849 5.7771 0.3517 12 6 5.0684 6.8872 0.3371 13 6 4.5495 7.8107 -0.7966 14 6 3.9429 6.8124 -1.8050 15 1 4.6637 6.5989 -2.5945 16 6 2.6633 7.3951 -2.4085 17 7 2.0133 6.3833 -3.2453 18 6 2.4704 6.1662 -4.6201 19 6 0.9787 5.6406 -2.7423 20 1 0.6344 5.8084 -1.7325 21 6 0.3724 4.6719 -3.5304 22 7 1.0793 4.0138 -4.4245 23 14 -1.4469 4.3028 -3.3220 24 1 -2.2280 5.0895 -4.3100 25 1 -1.6862 2.8537 -3.5425 26 1 -1.8725 4.6712 -1.9479 27 6 2.2753 2.1065 -1.1050 28 6 2.1090 1.6358 -2.5269 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8932 -0.5139 0.8899 34 1 1.0988 1.8689 2.8813 35 1 2.2723 0.5639 2.5840 36 1 2.8316 2.1449 3.1805 37 1 2.9967 4.1462 1.4018 38 1 3.1127 6.1024 0.9185 39 1 4.3906 4.8571 0.7726 40 1 6.0482 6.4785 0.0903 41 1 5.0968 7.4163 1.2898 42 1 5.3717 8.3648 -1.2493 43 1 3.7854 8.4910 -0.4204 44 1 1.9869 7.6932 -1.6074 45 1 2.9117 8.2648 -3.0167 46 1 3.1841 5.3427 -4.6399 47 1 1.6168 5.9225 -5.2525 48 1 2.9503 7.0720 -4.9908 49 1 0.6557 3.3367 -4.9749 50 1 3.0376 1.1794 -2.8696 51 1 1.3042 0.9023 -2.5751 52 1 1.8648 2.4854 -3.1647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733931894.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:35 Heat of formation + Delta-G solvation = 88.949187 kcal Electronic energy + Delta-G solvation = -32318.094931 eV Core-core repulsion = 28514.475991 eV Total energy + Delta-G solvation = -3803.618940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.85721 -38.91397 -36.02635 -34.91376 -33.65879 -32.05310 -31.27862 -30.71149 -29.05341 -28.69702 -28.19594 -25.61479 -24.98989 -24.25246 -23.34291 -22.36344 -20.86262 -20.59153 -19.91417 -18.53122 -17.06101 -16.52283 -16.22032 -15.57104 -15.18494 -14.86013 -14.66287 -14.21498 -13.71956 -13.50676 -13.37081 -13.08485 -12.93975 -12.82570 -12.75354 -12.63774 -12.40463 -12.31325 -12.17725 -11.80301 -11.71686 -11.46956 -11.35939 -11.30811 -11.13127 -11.08954 -10.79799 -10.69600 -10.55293 -10.49602 -10.45000 -10.31690 -10.18902 -9.82610 -9.74422 -9.44107 -8.09054 -7.93490 -7.83923 -7.21442 -7.11180 -6.25568 -5.39423 -2.56502 2.73550 3.10275 3.31308 3.55815 3.63096 3.66781 4.24420 4.78347 4.80435 4.96994 5.06771 5.07867 5.11706 5.17724 5.23008 5.37048 5.41480 5.55699 5.64824 5.68477 5.71186 5.76484 5.81017 5.85942 5.91728 6.00398 6.02326 6.09359 6.13473 6.17609 6.21044 6.30106 6.33563 6.39020 6.51041 6.52217 6.59591 6.62538 6.73291 6.84312 7.02538 7.08776 7.49160 7.57655 7.69365 7.83143 7.86866 8.04290 8.05681 8.24694 8.65672 9.00980 9.55530 10.08974 10.27167 10.71481 11.64991 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009782 B = 0.007057 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.781843 B = 3966.626602 C = 5933.461598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.100 3.900 3 N -0.446 5.446 4 C -0.012 4.012 5 C -0.075 4.075 6 C -0.183 4.183 7 C -0.196 4.196 8 C 0.571 3.429 9 O -0.406 6.406 10 N -0.615 5.615 11 C 0.106 3.894 12 C -0.135 4.135 13 C -0.128 4.128 14 C 0.119 3.881 15 H 0.056 0.944 16 C 0.145 3.855 17 N -0.587 5.587 18 C 0.166 3.834 19 C -0.214 4.214 20 H 0.062 0.938 21 C 0.014 3.986 22 N -0.853 5.853 23 Si 0.849 3.151 24 H -0.296 1.296 25 H -0.299 1.299 26 H -0.287 1.287 27 C 0.105 3.895 28 C -0.121 4.121 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.142 0.858 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.045 0.955 45 H 0.035 0.965 46 H 0.035 0.965 47 H 0.050 0.950 48 H -0.018 1.018 49 H 0.238 0.762 50 H 0.054 0.946 51 H 0.039 0.961 52 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.204 -3.361 12.212 14.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.125 5.125 4 C -0.119 4.119 5 C -0.133 4.133 6 C -0.207 4.207 7 C -0.205 4.205 8 C 0.358 3.642 9 O -0.272 6.272 10 N -0.355 5.355 11 C -0.019 4.019 12 C -0.173 4.173 13 C -0.166 4.166 14 C 0.012 3.988 15 H 0.074 0.926 16 C 0.016 3.984 17 N -0.308 5.308 18 C 0.021 3.979 19 C -0.343 4.343 20 H 0.080 0.920 21 C -0.183 4.183 22 N -0.499 5.499 23 Si 0.680 3.320 24 H -0.224 1.224 25 H -0.226 1.226 26 H -0.213 1.213 27 C -0.009 4.009 28 C -0.178 4.178 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.159 0.841 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.001 0.999 49 H 0.048 0.952 50 H 0.072 0.928 51 H 0.058 0.942 52 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.886 -3.998 11.314 13.365 hybrid contribution -1.229 -0.396 0.587 1.418 sum 4.657 -4.394 11.900 13.513 Atomic orbital electron populations 1.22165 0.94806 1.02332 1.03505 1.21674 0.95320 0.81717 1.03479 1.43555 1.52230 1.11350 1.05391 1.20009 1.10347 0.93402 0.88176 1.20202 1.02067 1.00415 0.90581 1.22168 1.07979 0.96217 0.94372 1.20312 1.13132 0.94824 0.92238 1.16761 0.79249 0.80279 0.87890 1.91100 1.45830 1.77940 1.12327 1.47958 1.67079 1.13521 1.06987 1.22360 0.96015 0.97794 0.85705 1.22803 0.98707 0.97167 0.98599 1.22660 0.99987 0.97543 0.96449 1.22316 0.98630 0.84622 0.93258 0.92635 1.21185 0.91981 0.91545 0.93681 1.44029 1.37256 1.39796 1.09730 1.20890 0.98530 0.93937 0.84520 1.18882 1.03885 1.13677 0.97862 0.92022 1.24324 0.96449 0.97484 1.00085 1.70379 1.31294 1.22591 1.25633 0.86987 0.91127 0.76647 0.77203 1.22418 1.22640 1.21290 1.20356 1.00649 0.91188 0.88689 1.21190 0.99438 1.06059 0.91064 0.91522 0.91270 0.92061 0.89603 0.89923 0.91863 0.92581 0.90819 0.84051 0.93146 0.91055 0.91407 0.91209 0.91381 0.91204 0.93677 0.94730 0.94725 0.93118 0.99909 0.95157 0.92777 0.94231 0.81851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.10 1.30 6.09 -4.05 -0.02 1.27 16 3 N -0.45 -7.60 2.68 -107.97 -0.29 -7.89 16 4 C -0.01 -0.20 6.85 -81.87 -0.56 -0.76 16 5 C -0.08 -0.86 10.06 36.01 0.36 -0.50 16 6 C -0.18 -3.29 9.16 -37.50 -0.34 -3.64 16 7 C -0.20 -4.24 6.18 -103.35 -0.64 -4.88 16 8 C 0.57 13.35 5.74 -12.59 -0.07 13.28 16 9 O -0.41 -10.70 6.82 5.25 0.04 -10.67 16 10 N -0.62 -12.35 3.06 -164.19 -0.50 -12.86 16 11 C 0.11 1.65 5.12 -2.41 -0.01 1.64 16 12 C -0.13 -1.72 7.10 -24.46 -0.17 -1.89 16 13 C -0.13 -1.79 6.47 -24.90 -0.16 -1.95 16 14 C 0.12 2.24 3.30 -66.96 -0.22 2.02 16 15 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 16 C 0.15 3.08 5.33 -4.04 -0.02 3.05 16 17 N -0.59 -14.94 1.70 -181.12 -0.31 -15.25 16 18 C 0.17 4.27 8.64 59.85 0.52 4.79 16 19 C -0.21 -5.94 6.16 -15.06 -0.09 -6.03 16 20 H 0.06 1.81 7.94 -52.48 -0.42 1.39 16 21 C 0.01 0.38 4.25 -17.43 -0.07 0.31 16 22 N -0.85 -24.04 7.05 55.49 0.39 -23.65 16 23 Si 0.85 22.37 29.66 -169.99 -5.04 17.33 16 24 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 25 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 26 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 27 C 0.11 2.18 6.89 -81.88 -0.56 1.62 16 28 C -0.12 -2.57 9.33 36.01 0.34 -2.23 16 29 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.06 7.49 -51.93 -0.39 0.67 16 33 H 0.08 0.85 6.90 -51.93 -0.36 0.49 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.55 6.94 -51.93 -0.36 0.19 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.14 2.25 5.14 -52.49 -0.27 1.98 16 38 H 0.05 0.79 7.76 -51.93 -0.40 0.39 16 39 H 0.07 1.08 5.91 -51.93 -0.31 0.78 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.94 7.78 -51.93 -0.40 0.53 16 44 H 0.04 0.97 7.83 -51.93 -0.41 0.56 16 45 H 0.03 0.68 7.99 -51.93 -0.42 0.26 16 46 H 0.03 0.97 6.29 -51.93 -0.33 0.65 16 47 H 0.05 1.42 6.38 -51.93 -0.33 1.09 16 48 H -0.02 -0.42 7.92 -51.93 -0.41 -0.83 16 49 H 0.24 6.65 8.31 -40.82 -0.34 6.31 16 50 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 51 H 0.04 0.76 7.58 -51.93 -0.39 0.37 16 52 H 0.16 4.14 3.71 -51.93 -0.19 3.95 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -32.05 382.50 -10.06 -42.12 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.75 Total: 0.77 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -1.36 Total: 4.33 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.71 Total: -59.65 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.04 Total: -10.67 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.04 Total: 17.33 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.05 -10.06 -42.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733931894.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.067 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds