Wall clock time and date at job start Tue Mar 31 2020 17:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47447 * 2 1 4 4 C 1.36447 * 124.84741 * 89.97736 * 3 2 1 5 5 C 1.50700 * 125.57409 * 359.97438 * 4 3 2 6 6 C 1.34485 * 108.85745 * 179.97438 * 4 3 2 7 7 C 1.46689 * 106.33090 * 359.97438 * 6 4 3 8 8 C 1.47266 * 126.94185 * 179.73628 * 7 6 4 9 9 O 1.21628 * 119.99961 * 186.34859 * 8 7 6 10 10 N 1.34777 * 120.00138 * 6.34349 * 8 7 6 11 11 C 1.47429 * 125.64580 * 5.91328 * 10 8 7 12 12 C 1.55127 * 104.71859 * 155.81347 * 11 10 8 13 13 C 1.55156 * 101.48750 * 37.29548 * 12 11 10 14 14 C 1.47014 * 125.65051 * 186.22000 * 10 8 7 15 15 H 1.09011 * 109.88097 * 300.44201 * 14 10 8 16 16 C 1.53002 * 109.88493 * 61.60574 * 14 10 8 17 17 N 1.46503 * 109.46998 * 304.25401 * 16 14 10 18 18 C 1.46500 * 119.99890 * 278.01484 * 17 16 14 19 19 C 1.36931 * 119.99796 * 98.01458 * 17 16 14 20 20 H 1.08004 * 120.00322 * 0.69868 * 19 17 16 21 21 C 1.38817 * 119.99851 * 180.69724 * 19 17 16 22 22 N 1.31612 * 120.00115 * 32.27861 * 21 19 17 23 23 Si 1.86801 * 119.99824 * 212.28750 * 21 19 17 24 24 H 1.48497 * 109.47475 * 94.99399 * 23 21 19 25 25 H 1.48511 * 109.46656 * 214.99660 * 23 21 19 26 26 H 1.48498 * 109.47183 * 334.98736 * 23 21 19 27 27 C 1.34652 * 124.85330 * 269.97524 * 3 2 1 28 28 C 1.50703 * 125.80250 * 0.02562 * 27 3 2 29 29 H 1.09011 * 109.47125 * 59.99321 * 1 2 3 30 30 H 1.08995 * 109.47545 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46918 * 300.00215 * 1 2 3 32 32 H 1.09005 * 109.46768 * 240.00129 * 2 1 3 33 33 H 1.08998 * 109.46873 * 120.00627 * 2 1 3 34 34 H 1.09001 * 109.46799 * 269.99941 * 5 4 3 35 35 H 1.08997 * 109.46836 * 30.00126 * 5 4 3 36 36 H 1.08996 * 109.47256 * 149.99912 * 5 4 3 37 37 H 1.08002 * 126.84029 * 180.02562 * 6 4 3 38 38 H 1.08995 * 110.36271 * 274.74583 * 11 10 8 39 39 H 1.09003 * 110.36381 * 37.06838 * 11 10 8 40 40 H 1.08997 * 111.19808 * 279.19068 * 12 11 10 41 41 H 1.09008 * 110.93751 * 155.29142 * 12 11 10 42 42 H 1.09002 * 110.71854 * 205.96227 * 13 12 11 43 43 H 1.09004 * 110.71830 * 82.69100 * 13 12 11 44 44 H 1.09000 * 109.46884 * 64.25392 * 16 14 10 45 45 H 1.09000 * 109.47224 * 184.25150 * 16 14 10 46 46 H 1.09002 * 109.46836 * 95.27134 * 18 17 16 47 47 H 1.08992 * 109.47040 * 215.27078 * 18 17 16 48 48 H 1.09002 * 109.47452 * 335.27426 * 18 17 16 49 49 H 0.96995 * 120.00118 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.47122 * 269.99946 * 28 27 3 51 51 H 1.08995 * 109.47254 * 30.00003 * 28 27 3 52 52 H 1.09003 * 109.47190 * 149.99998 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2779 2.1163 1.1198 5 6 2.1085 1.6406 2.5397 6 6 2.7095 3.3349 0.7493 7 6 2.7139 3.3426 -0.7175 8 6 3.1041 4.4587 -1.5956 9 8 2.9507 4.3682 -2.7988 10 7 3.6313 5.5803 -1.0660 11 6 3.9849 5.7771 0.3517 12 6 5.0684 6.8872 0.3371 13 6 4.5495 7.8107 -0.7966 14 6 3.9429 6.8124 -1.8050 15 1 4.6637 6.5989 -2.5945 16 6 2.6633 7.3951 -2.4085 17 7 2.0133 6.3833 -3.2453 18 6 2.4704 6.1662 -4.6201 19 6 0.9787 5.6406 -2.7423 20 1 0.6344 5.8084 -1.7325 21 6 0.3724 4.6719 -3.5304 22 7 1.0793 4.0138 -4.4245 23 14 -1.4469 4.3028 -3.3220 24 1 -2.2280 5.0895 -4.3100 25 1 -1.6862 2.8537 -3.5425 26 1 -1.8725 4.6712 -1.9479 27 6 2.2753 2.1065 -1.1050 28 6 2.1090 1.6358 -2.5269 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8932 -0.5139 0.8899 34 1 1.0988 1.8689 2.8813 35 1 2.2723 0.5639 2.5840 36 1 2.8316 2.1449 3.1805 37 1 2.9967 4.1462 1.4018 38 1 3.1127 6.1024 0.9185 39 1 4.3906 4.8571 0.7726 40 1 6.0482 6.4785 0.0903 41 1 5.0968 7.4163 1.2898 42 1 5.3717 8.3648 -1.2493 43 1 3.7854 8.4910 -0.4204 44 1 1.9869 7.6932 -1.6074 45 1 2.9117 8.2648 -3.0167 46 1 3.1841 5.3427 -4.6399 47 1 1.6168 5.9225 -5.2525 48 1 2.9503 7.0720 -4.9908 49 1 0.6557 3.3367 -4.9749 50 1 3.0376 1.1794 -2.8696 51 1 1.3042 0.9023 -2.5751 52 1 1.8648 2.4854 -3.1647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733931894.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:33 Heat of formation + Delta-G solvation = 71.899076 kcal Electronic energy + Delta-G solvation = -32318.834280 eV Core-core repulsion = 28514.475991 eV Total energy + Delta-G solvation = -3804.358289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.21319 -40.42231 -37.59284 -36.82512 -34.87689 -33.45649 -33.11365 -32.11605 -30.60222 -30.01357 -29.55359 -27.72911 -26.56534 -25.73684 -24.54253 -23.85613 -22.50181 -21.91812 -21.34506 -19.96451 -18.59299 -18.46052 -17.59655 -17.01345 -16.67670 -16.51750 -16.13559 -15.66609 -15.52352 -15.11819 -14.93163 -14.41652 -14.36057 -14.11627 -14.03967 -13.92628 -13.71147 -13.64293 -13.44486 -13.42366 -13.12266 -13.05553 -12.88406 -12.77510 -12.73519 -12.65521 -12.39576 -12.31224 -12.19981 -12.15775 -11.95939 -11.84067 -11.78531 -11.54455 -11.45468 -11.39767 -10.10022 -9.65501 -9.22351 -8.99613 -8.61237 -8.18775 -7.53160 -4.69644 1.25806 1.39105 1.45194 1.47514 1.71693 2.07030 2.65761 2.80286 3.35276 3.51806 3.77971 3.83967 3.93221 3.96487 4.08397 4.14901 4.18827 4.25789 4.29056 4.45764 4.47965 4.56954 4.59639 4.66009 4.69538 4.76400 4.81682 4.82977 4.85887 4.88308 4.93131 4.99576 5.01812 5.06627 5.08429 5.17466 5.19337 5.23742 5.25202 5.37449 5.43936 5.56676 5.65259 5.79361 5.89164 6.02219 6.12902 6.27256 6.45766 6.53678 6.65532 7.41860 7.42344 8.20599 8.41706 8.61667 9.49444 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009782 B = 0.007057 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.781843 B = 3966.626602 C = 5933.461598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 N -0.444 5.444 4 C 0.004 3.996 5 C -0.072 4.072 6 C -0.202 4.202 7 C -0.230 4.230 8 C 0.558 3.442 9 O -0.452 6.452 10 N -0.623 5.623 11 C 0.100 3.900 12 C -0.120 4.120 13 C -0.115 4.115 14 C 0.118 3.882 15 H 0.031 0.969 16 C 0.141 3.859 17 N -0.596 5.596 18 C 0.188 3.812 19 C -0.204 4.204 20 H 0.042 0.958 21 C -0.017 4.017 22 N -0.859 5.859 23 Si 0.888 3.112 24 H -0.301 1.301 25 H -0.303 1.303 26 H -0.291 1.291 27 C 0.077 3.923 28 C -0.114 4.114 29 H 0.028 0.972 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.160 0.840 38 H 0.052 0.948 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.042 0.958 45 H 0.053 0.947 46 H 0.005 0.995 47 H 0.022 0.978 48 H 0.007 0.993 49 H 0.229 0.771 50 H 0.054 0.946 51 H 0.047 0.953 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.094 -3.288 15.903 17.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.122 5.122 4 C -0.105 4.105 5 C -0.129 4.129 6 C -0.226 4.226 7 C -0.240 4.240 8 C 0.346 3.654 9 O -0.322 6.322 10 N -0.362 5.362 11 C -0.022 4.022 12 C -0.158 4.158 13 C -0.154 4.154 14 C 0.011 3.989 15 H 0.050 0.950 16 C 0.014 3.986 17 N -0.318 5.318 18 C 0.043 3.957 19 C -0.333 4.333 20 H 0.060 0.940 21 C -0.213 4.213 22 N -0.506 5.506 23 Si 0.720 3.280 24 H -0.230 1.230 25 H -0.231 1.231 26 H -0.218 1.218 27 C -0.038 4.038 28 C -0.171 4.171 29 H 0.047 0.953 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.177 0.823 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.024 0.976 47 H 0.041 0.959 48 H 0.025 0.975 49 H 0.039 0.961 50 H 0.073 0.927 51 H 0.066 0.934 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.793 -3.903 15.059 16.975 hybrid contribution -1.471 -0.443 -0.493 1.614 sum 5.322 -4.346 14.566 16.105 Atomic orbital electron populations 1.22131 0.94518 1.03939 1.01638 1.22031 0.95504 0.79828 1.05471 1.43808 1.51204 1.12602 1.04569 1.20794 1.07206 0.92555 0.89928 1.20366 1.03322 1.02066 0.87195 1.22361 1.09596 0.97962 0.92700 1.20536 1.14398 0.94830 0.94212 1.17282 0.78801 0.81434 0.87906 1.91074 1.47931 1.79158 1.14014 1.48077 1.66074 1.12970 1.09099 1.22563 0.97171 0.99362 0.83146 1.22787 0.97523 0.95692 0.99760 1.22613 1.00754 0.96586 0.95447 1.22223 0.96823 0.85514 0.94308 0.95033 1.21381 0.92712 0.91100 0.93418 1.44119 1.37529 1.40076 1.10097 1.20506 0.96585 0.93912 0.84723 1.18647 1.04356 1.13583 0.96753 0.94049 1.24615 0.97924 0.97960 1.00826 1.70523 1.31228 1.22723 1.26116 0.86368 0.89167 0.76005 0.76440 1.22950 1.23083 1.21759 1.20234 1.02292 0.92011 0.89238 1.20924 0.99657 1.04746 0.91791 0.95283 0.87952 0.91901 0.89469 0.86103 0.90816 0.90262 0.88791 0.82306 0.92943 0.90588 0.90954 0.87592 0.89072 0.90046 0.94005 0.92911 0.97632 0.95928 0.97465 0.96061 0.92735 0.93415 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 10.24 71.98 0.74 -3.11 16 2 C 0.09 2.18 6.09 86.38 0.53 2.70 16 3 N -0.44 -14.62 2.68 -495.50 -1.33 -15.95 16 4 C 0.00 0.11 6.85 40.98 0.28 0.39 16 5 C -0.07 -1.33 10.06 71.24 0.72 -0.61 16 6 C -0.20 -7.08 9.16 23.62 0.22 -6.87 16 7 C -0.23 -10.20 6.18 -19.04 -0.12 -10.32 16 8 C 0.56 27.04 5.74 86.62 0.50 27.54 16 9 O -0.45 -25.20 6.82 -4.12 -0.03 -25.22 16 10 N -0.62 -25.14 3.06 -791.63 -2.42 -27.56 16 11 C 0.10 2.97 5.12 86.93 0.45 3.41 16 12 C -0.12 -2.62 7.10 32.06 0.23 -2.39 16 13 C -0.12 -2.88 6.47 31.78 0.21 -2.68 16 14 C 0.12 4.40 3.30 45.34 0.15 4.55 16 15 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 16 C 0.14 5.98 5.33 86.38 0.46 6.44 16 17 N -0.60 -31.27 1.70 -726.93 -1.24 -32.51 16 18 C 0.19 10.07 8.64 127.77 1.10 11.17 16 19 C -0.20 -11.71 6.16 84.04 0.52 -11.19 16 20 H 0.04 2.52 7.94 -2.91 -0.02 2.50 16 21 C -0.02 -1.00 4.25 84.86 0.36 -0.64 16 22 N -0.86 -51.14 7.05 21.65 0.15 -50.99 16 23 Si 0.89 47.73 29.66 68.60 2.03 49.76 16 24 H -0.30 -16.27 7.11 99.48 0.71 -15.56 16 25 H -0.30 -16.33 7.11 99.48 0.71 -15.62 16 26 H -0.29 -15.70 7.11 99.48 0.71 -14.99 16 27 C 0.08 3.29 6.89 41.78 0.29 3.58 16 28 C -0.11 -5.13 9.33 71.24 0.66 -4.47 16 29 H 0.03 0.88 8.14 -2.38 -0.02 0.87 16 30 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 2.04 7.49 -2.38 -0.02 2.02 16 33 H 0.12 1.95 6.90 -2.39 -0.02 1.94 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.13 6.94 -2.39 -0.02 1.11 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.16 4.76 5.14 -2.91 -0.01 4.74 16 38 H 0.05 1.53 7.76 -2.39 -0.02 1.52 16 39 H 0.08 2.18 5.91 -2.39 -0.01 2.16 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.08 1.89 7.78 -2.38 -0.02 1.87 16 44 H 0.04 1.78 7.83 -2.39 -0.02 1.76 16 45 H 0.05 2.02 7.99 -2.39 -0.02 2.00 16 46 H 0.01 0.33 6.29 -2.39 -0.02 0.31 16 47 H 0.02 1.30 6.38 -2.39 -0.02 1.29 16 48 H 0.01 0.33 7.92 -2.39 -0.02 0.31 16 49 H 0.23 13.58 8.31 -92.71 -0.77 12.81 16 50 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 51 H 0.05 1.95 7.58 -2.39 -0.02 1.93 16 52 H 0.13 6.98 3.71 -2.39 -0.01 6.98 16 Total: -1.00 -75.99 382.50 5.35 -70.65 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.90 Total: 14.32 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 7.28 Total: 17.51 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -4.84 Total: -127.01 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.03 Total: -25.22 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -75.99 5.35 -70.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733931894.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.546 kcal (2) G-P(sol) polarization free energy of solvation -75.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds