Wall clock time and date at job start Tue Mar 31 2020 17:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47438 * 2 1 4 4 C 1.53000 * 109.47142 * 119.99975 * 2 1 3 5 5 N 1.46503 * 109.47175 * 175.00113 * 4 2 1 6 6 C 1.34778 * 119.99896 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00291 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99821 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.46874 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47248 * 180.02562 * 9 8 6 11 11 C 1.38312 * 119.96125 * 270.02163 * 10 9 8 12 12 C 1.38263 * 120.14604 * 179.97438 * 11 10 9 13 13 C 1.38123 * 120.07805 * 359.74877 * 12 11 10 14 14 C 1.38884 * 119.92380 * 0.48120 * 13 12 11 15 15 N 1.39676 * 120.07480 * 179.79406 * 14 13 12 16 16 C 1.46496 * 119.99917 * 179.72250 * 15 14 13 17 17 C 1.46501 * 119.99796 * 359.44869 * 15 14 13 18 18 C 1.38078 * 119.96533 * 89.99480 * 10 9 8 19 19 N 1.46503 * 109.47234 * 239.99922 * 2 1 3 20 20 C 1.46495 * 120.00263 * 300.00161 * 19 2 1 21 21 C 1.36937 * 119.99448 * 120.00135 * 19 2 1 22 22 H 1.08000 * 120.00386 * 327.90784 * 21 19 2 23 23 C 1.38814 * 119.99719 * 147.91228 * 21 19 2 24 24 N 1.31617 * 120.00402 * 152.73665 * 23 21 19 25 25 Si 1.86800 * 119.99861 * 332.73376 * 23 21 19 26 26 H 1.48498 * 109.47278 * 95.39491 * 25 23 21 27 27 H 1.48503 * 109.46980 * 215.39158 * 25 23 21 28 28 H 1.48493 * 109.47245 * 335.39064 * 25 23 21 29 29 H 1.08997 * 109.47053 * 300.00030 * 1 2 3 30 30 H 1.08994 * 109.46905 * 59.99998 * 1 2 3 31 31 H 1.09005 * 109.46957 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46996 * 55.00433 * 4 2 1 33 33 H 1.08999 * 109.47331 * 295.00146 * 4 2 1 34 34 H 0.96996 * 120.00091 * 0.02562 * 5 4 2 35 35 H 1.08997 * 109.47484 * 59.99878 * 8 6 5 36 36 H 1.08999 * 109.47001 * 299.99940 * 8 6 5 37 37 H 1.09003 * 109.47841 * 59.99991 * 9 8 6 38 38 H 1.08999 * 109.47186 * 299.99739 * 9 8 6 39 39 H 1.08001 * 119.92334 * 359.97438 * 11 10 9 40 40 H 1.08004 * 119.95927 * 179.97438 * 12 11 10 41 41 H 1.08001 * 120.03431 * 180.27441 * 13 12 11 42 42 H 1.09006 * 109.46959 * 90.00427 * 16 15 14 43 43 H 1.09005 * 109.47490 * 209.99473 * 16 15 14 44 44 H 1.08996 * 109.47478 * 330.00121 * 16 15 14 45 45 H 1.08997 * 109.47361 * 90.00471 * 17 15 14 46 46 H 1.09005 * 109.46866 * 209.99788 * 17 15 14 47 47 H 1.08991 * 109.47229 * 329.99808 * 17 15 14 48 48 H 1.07999 * 120.03708 * 0.02562 * 18 10 9 49 49 H 1.08996 * 109.47162 * 95.17103 * 20 19 2 50 50 H 1.08998 * 109.47295 * 215.17269 * 20 19 2 51 51 H 1.09007 * 109.46881 * 335.16959 * 20 19 2 52 52 H 0.96993 * 120.00828 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5699 -1.8842 3.1395 8 6 5.6750 -1.5368 2.1307 9 6 6.1848 -2.2592 3.3792 10 6 7.6868 -2.3663 3.3196 11 6 8.2778 -3.4658 2.7237 12 6 9.6555 -3.5677 2.6664 13 6 10.4463 -2.5687 3.1997 14 6 9.8562 -1.4657 3.8030 15 7 10.6529 -0.4557 4.3471 16 6 10.0286 0.7100 4.9777 17 6 12.1128 -0.5650 4.2926 18 6 8.4715 -1.3666 3.8593 19 7 2.0184 -0.6906 -1.1962 20 6 1.6645 -2.0932 -1.4281 21 6 2.8057 -0.0250 -2.0975 22 1 2.6684 1.0345 -2.2554 23 6 3.7801 -0.7122 -2.8082 24 7 4.1577 -0.2810 -3.9930 25 14 4.5557 -2.2491 -2.0830 26 1 3.8490 -3.4499 -2.5969 27 1 5.9871 -2.3125 -2.4731 28 1 4.4475 -2.2068 -0.6026 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1370 34 1 3.9825 -0.4621 0.4320 35 1 6.1093 -0.5381 2.0855 36 1 5.9637 -2.0990 1.2426 37 1 5.7505 -3.2580 3.4240 38 1 5.8961 -1.6974 4.2675 39 1 7.6617 -4.2463 2.3023 40 1 10.1138 -4.4277 2.2007 41 1 11.5224 -2.6469 3.1506 42 1 9.8754 0.5107 6.0384 43 1 10.6782 1.5776 4.8613 44 1 9.0680 0.9091 4.5029 45 1 12.4775 -0.1062 3.3736 46 1 12.5477 -0.0536 5.1514 47 1 12.3994 -1.6164 4.3124 48 1 8.0094 -0.5083 4.3244 49 1 0.7897 -2.1448 -2.0762 50 1 2.5005 -2.6048 -1.9048 51 1 1.4400 -2.5735 -0.4756 52 1 4.8388 -0.7609 -4.4895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734052423.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:57 Heat of formation + Delta-G solvation = 20.128417 kcal Electronic energy + Delta-G solvation = -28971.893722 eV Core-core repulsion = 25165.290489 eV Total energy + Delta-G solvation = -3806.603233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.90643 -39.22723 -37.05083 -36.56576 -33.77505 -33.57447 -32.13773 -30.59275 -30.21455 -29.63796 -28.34038 -26.22126 -26.05426 -24.96935 -23.94473 -23.09181 -21.66849 -20.28545 -19.85837 -19.26571 -17.44779 -17.01175 -16.50204 -16.10505 -15.68663 -15.54899 -15.53478 -15.30675 -15.28119 -14.42035 -14.21322 -13.93634 -13.74008 -13.23851 -13.13398 -12.91364 -12.87065 -12.77302 -12.54498 -12.34782 -12.31113 -12.20839 -12.17272 -12.04491 -11.84816 -11.79660 -11.44967 -11.15087 -10.93264 -10.82091 -10.76063 -10.48820 -10.14340 -10.02109 -9.91639 -9.58579 -9.44083 -8.73718 -8.54487 -8.43053 -7.41361 -6.99333 -6.08636 -3.42115 1.38599 1.58273 2.92058 3.07670 3.27886 3.41076 3.46227 3.69070 3.90818 4.45717 4.65738 4.72665 4.84961 4.90956 4.96937 4.99324 5.13731 5.18635 5.21999 5.22377 5.30346 5.37331 5.39242 5.45003 5.46586 5.51520 5.56872 5.65092 5.76954 5.81616 5.96264 5.97346 6.01091 6.05826 6.13369 6.17847 6.26075 6.27585 6.33637 6.51463 6.52863 6.68398 6.72141 6.73171 6.79085 6.82126 7.03561 7.06248 7.36079 7.92814 8.09555 8.27485 8.71141 8.89272 9.64022 10.03707 11.06766 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.002893 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.117569 B = 9676.684014 C =10454.017486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.077 0.923 4 C 0.103 3.897 5 N -0.707 5.707 6 C 0.510 3.490 7 O -0.562 6.562 8 C -0.137 4.137 9 C -0.063 4.063 10 C -0.032 4.032 11 C -0.173 4.173 12 C -0.071 4.071 13 C -0.204 4.204 14 C 0.212 3.788 15 N -0.641 5.641 16 C 0.093 3.907 17 C 0.095 3.905 18 C -0.192 4.192 19 N -0.603 5.603 20 C 0.113 3.887 21 C -0.276 4.276 22 H 0.080 0.920 23 C 0.036 3.964 24 N -0.892 5.892 25 Si 0.870 3.130 26 H -0.290 1.290 27 H -0.305 1.305 28 H -0.258 1.258 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.413 0.587 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.046 0.954 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.122 0.878 49 H 0.017 0.983 50 H 0.038 0.962 51 H 0.033 0.967 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.434 -1.039 16.638 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.095 0.905 4 C -0.023 4.023 5 N -0.359 5.359 6 C 0.296 3.704 7 O -0.442 6.442 8 C -0.177 4.177 9 C -0.100 4.100 10 C -0.032 4.032 11 C -0.192 4.192 12 C -0.090 4.090 13 C -0.226 4.226 14 C 0.111 3.889 15 N -0.354 5.354 16 C -0.050 4.050 17 C -0.048 4.048 18 C -0.214 4.214 19 N -0.327 5.327 20 C -0.031 4.031 21 C -0.404 4.404 22 H 0.098 0.902 23 C -0.165 4.165 24 N -0.532 5.532 25 Si 0.701 3.299 26 H -0.219 1.219 27 H -0.233 1.233 28 H -0.183 1.183 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.251 0.749 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.140 0.860 49 H 0.035 0.965 50 H 0.056 0.944 51 H 0.052 0.948 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.220 -1.193 17.201 20.571 hybrid contribution 0.841 -0.784 -0.282 1.184 sum 12.061 -1.977 16.919 20.871 Atomic orbital electron populations 1.22140 0.96999 1.01386 1.01031 1.20774 0.92822 0.96383 0.85105 0.90463 1.21948 0.80247 1.00975 0.99172 1.46091 1.08147 1.58308 1.23354 1.20551 0.89860 0.77707 0.82291 1.90633 1.70617 1.49005 1.33978 1.21663 0.92622 1.03111 1.00311 1.20324 0.89933 1.02147 0.97630 1.19679 0.95193 0.93358 0.95004 1.20871 0.94712 0.99362 1.04301 1.20859 0.93572 0.97544 0.97006 1.20617 0.99520 0.95660 1.06789 1.17793 0.90308 0.88200 0.92554 1.46277 1.04581 1.20932 1.63620 1.21622 0.98969 0.87319 0.97064 1.21594 0.79813 1.02266 1.01142 1.20552 0.91309 1.01190 1.08337 1.44117 1.58322 1.08874 1.21360 1.21269 0.98227 0.85927 0.97709 1.18795 1.11174 0.95270 1.15175 0.90229 1.25347 0.97497 0.97706 0.95973 1.69935 1.31744 1.41573 1.09970 0.87158 0.77685 0.83837 0.81227 1.21852 1.23318 1.18256 0.93323 0.92123 0.93193 0.92445 0.92406 0.74942 0.88990 0.88836 0.90225 0.90371 0.86372 0.86270 0.86353 0.93533 0.91679 0.91115 0.93483 0.91756 0.91409 0.86042 0.96505 0.94399 0.94811 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.19 37.16 0.34 -2.10 16 2 C 0.16 2.84 2.87 -67.93 -0.19 2.65 16 3 H 0.08 1.41 7.89 -51.93 -0.41 1.01 16 4 C 0.10 1.79 4.93 -4.04 -0.02 1.77 16 5 N -0.71 -12.88 4.54 -60.29 -0.27 -13.15 16 6 C 0.51 9.07 7.83 -10.98 -0.09 8.98 16 7 O -0.56 -11.29 15.98 5.55 0.09 -11.20 16 8 C -0.14 -2.04 5.68 -27.88 -0.16 -2.20 16 9 C -0.06 -0.85 4.63 -27.88 -0.13 -0.98 16 10 C -0.03 -0.41 5.13 -104.65 -0.54 -0.95 16 11 C -0.17 -2.19 9.70 -39.55 -0.38 -2.57 16 12 C -0.07 -0.82 10.04 -39.61 -0.40 -1.22 16 13 C -0.20 -2.30 9.20 -39.38 -0.36 -2.66 16 14 C 0.21 2.50 6.55 -83.79 -0.55 1.95 16 15 N -0.64 -6.22 3.41 -187.55 -0.64 -6.86 16 16 C 0.09 0.72 10.19 59.84 0.61 1.33 16 17 C 0.10 0.68 10.18 59.85 0.61 1.28 16 18 C -0.19 -2.36 8.86 -39.38 -0.35 -2.70 16 19 N -0.60 -13.18 1.93 -173.49 -0.33 -13.51 16 20 C 0.11 2.41 8.77 59.84 0.52 2.94 16 21 C -0.28 -7.13 9.56 -15.06 -0.14 -7.28 16 22 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 23 C 0.04 0.97 5.27 -17.43 -0.09 0.88 16 24 N -0.89 -26.12 13.97 55.49 0.78 -25.35 16 25 Si 0.87 20.72 24.74 -169.99 -4.21 16.51 16 26 H -0.29 -7.09 6.62 56.52 0.37 -6.72 16 27 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 28 H -0.26 -5.61 5.40 56.52 0.31 -5.30 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.77 7.67 -51.93 -0.40 0.37 16 32 H 0.06 1.05 6.86 -51.93 -0.36 0.70 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.41 7.90 6.71 -40.82 -0.27 7.63 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.45 8.11 -51.93 -0.42 1.03 16 37 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 38 H 0.08 1.05 8.04 -51.93 -0.42 0.64 16 39 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 41 H 0.12 1.10 6.16 -52.49 -0.32 0.78 16 42 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.40 8.07 -51.93 -0.42 -0.02 16 44 H 0.07 0.57 6.20 -51.93 -0.32 0.25 16 45 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.35 8.07 -51.93 -0.42 -0.07 16 47 H 0.07 0.45 6.22 -51.93 -0.32 0.13 16 48 H 0.12 1.35 6.14 -52.49 -0.32 1.02 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.04 0.88 2.75 -51.93 -0.14 0.74 16 51 H 0.03 0.65 6.54 -51.93 -0.34 0.31 16 52 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -31.33 405.23 -8.59 -39.92 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -8.79 Total: 8.41 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.32 Total: -0.88 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.47 Total: -58.87 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.21 Total: 16.51 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.33 -8.59 -39.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734052423.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.045 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds