Wall clock time and date at job start Tue Mar 31 2020 17:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47438 * 2 1 4 4 C 1.53000 * 109.47142 * 119.99975 * 2 1 3 5 5 N 1.46503 * 109.47175 * 175.00113 * 4 2 1 6 6 C 1.34778 * 119.99896 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00291 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99821 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.46874 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47248 * 180.02562 * 9 8 6 11 11 C 1.38312 * 119.96125 * 270.02163 * 10 9 8 12 12 C 1.38263 * 120.14604 * 179.97438 * 11 10 9 13 13 C 1.38123 * 120.07805 * 359.74877 * 12 11 10 14 14 C 1.38884 * 119.92380 * 0.48120 * 13 12 11 15 15 N 1.39676 * 120.07480 * 179.79406 * 14 13 12 16 16 C 1.46496 * 119.99917 * 179.72250 * 15 14 13 17 17 C 1.46501 * 119.99796 * 359.44869 * 15 14 13 18 18 C 1.38078 * 119.96533 * 89.99480 * 10 9 8 19 19 N 1.46503 * 109.47234 * 239.99922 * 2 1 3 20 20 C 1.46495 * 120.00263 * 300.00161 * 19 2 1 21 21 C 1.36937 * 119.99448 * 120.00135 * 19 2 1 22 22 H 1.08000 * 120.00386 * 327.90784 * 21 19 2 23 23 C 1.38814 * 119.99719 * 147.91228 * 21 19 2 24 24 N 1.31617 * 120.00402 * 152.73665 * 23 21 19 25 25 Si 1.86800 * 119.99861 * 332.73376 * 23 21 19 26 26 H 1.48498 * 109.47278 * 95.39491 * 25 23 21 27 27 H 1.48503 * 109.46980 * 215.39158 * 25 23 21 28 28 H 1.48493 * 109.47245 * 335.39064 * 25 23 21 29 29 H 1.08997 * 109.47053 * 300.00030 * 1 2 3 30 30 H 1.08994 * 109.46905 * 59.99998 * 1 2 3 31 31 H 1.09005 * 109.46957 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46996 * 55.00433 * 4 2 1 33 33 H 1.08999 * 109.47331 * 295.00146 * 4 2 1 34 34 H 0.96996 * 120.00091 * 0.02562 * 5 4 2 35 35 H 1.08997 * 109.47484 * 59.99878 * 8 6 5 36 36 H 1.08999 * 109.47001 * 299.99940 * 8 6 5 37 37 H 1.09003 * 109.47841 * 59.99991 * 9 8 6 38 38 H 1.08999 * 109.47186 * 299.99739 * 9 8 6 39 39 H 1.08001 * 119.92334 * 359.97438 * 11 10 9 40 40 H 1.08004 * 119.95927 * 179.97438 * 12 11 10 41 41 H 1.08001 * 120.03431 * 180.27441 * 13 12 11 42 42 H 1.09006 * 109.46959 * 90.00427 * 16 15 14 43 43 H 1.09005 * 109.47490 * 209.99473 * 16 15 14 44 44 H 1.08996 * 109.47478 * 330.00121 * 16 15 14 45 45 H 1.08997 * 109.47361 * 90.00471 * 17 15 14 46 46 H 1.09005 * 109.46866 * 209.99788 * 17 15 14 47 47 H 1.08991 * 109.47229 * 329.99808 * 17 15 14 48 48 H 1.07999 * 120.03708 * 0.02562 * 18 10 9 49 49 H 1.08996 * 109.47162 * 95.17103 * 20 19 2 50 50 H 1.08998 * 109.47295 * 215.17269 * 20 19 2 51 51 H 1.09007 * 109.46881 * 335.16959 * 20 19 2 52 52 H 0.96993 * 120.00828 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5699 -1.8842 3.1395 8 6 5.6750 -1.5368 2.1307 9 6 6.1848 -2.2592 3.3792 10 6 7.6868 -2.3663 3.3196 11 6 8.2778 -3.4658 2.7237 12 6 9.6555 -3.5677 2.6664 13 6 10.4463 -2.5687 3.1997 14 6 9.8562 -1.4657 3.8030 15 7 10.6529 -0.4557 4.3471 16 6 10.0286 0.7100 4.9777 17 6 12.1128 -0.5650 4.2926 18 6 8.4715 -1.3666 3.8593 19 7 2.0184 -0.6906 -1.1962 20 6 1.6645 -2.0932 -1.4281 21 6 2.8057 -0.0250 -2.0975 22 1 2.6684 1.0345 -2.2554 23 6 3.7801 -0.7122 -2.8082 24 7 4.1577 -0.2810 -3.9930 25 14 4.5557 -2.2491 -2.0830 26 1 3.8490 -3.4499 -2.5969 27 1 5.9871 -2.3125 -2.4731 28 1 4.4475 -2.2068 -0.6026 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1370 34 1 3.9825 -0.4621 0.4320 35 1 6.1093 -0.5381 2.0855 36 1 5.9637 -2.0990 1.2426 37 1 5.7505 -3.2580 3.4240 38 1 5.8961 -1.6974 4.2675 39 1 7.6617 -4.2463 2.3023 40 1 10.1138 -4.4277 2.2007 41 1 11.5224 -2.6469 3.1506 42 1 9.8754 0.5107 6.0384 43 1 10.6782 1.5776 4.8613 44 1 9.0680 0.9091 4.5029 45 1 12.4775 -0.1062 3.3736 46 1 12.5477 -0.0536 5.1514 47 1 12.3994 -1.6164 4.3124 48 1 8.0094 -0.5083 4.3244 49 1 0.7897 -2.1448 -2.0762 50 1 2.5005 -2.6048 -1.9048 51 1 1.4400 -2.5735 -0.4756 52 1 4.8388 -0.7609 -4.4895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734052423.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:56 Heat of formation + Delta-G solvation = 2.578555 kcal Electronic energy + Delta-G solvation = -28972.654741 eV Core-core repulsion = 25165.290489 eV Total energy + Delta-G solvation = -3807.364252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.96487 -40.43460 -38.60850 -37.40962 -35.36255 -34.66005 -33.92627 -31.97505 -31.34285 -30.58122 -29.04791 -28.05613 -27.28922 -25.69661 -25.30530 -24.68957 -22.53264 -21.40268 -21.11715 -20.71115 -18.93773 -18.35532 -17.79891 -17.44710 -17.09630 -16.96641 -16.57397 -16.38326 -15.94198 -15.87411 -15.36549 -15.08873 -14.75908 -14.70112 -14.43404 -14.22848 -14.15850 -14.05041 -13.77059 -13.70851 -13.60226 -13.43918 -13.20748 -12.93404 -12.90692 -12.73831 -12.61293 -12.49795 -12.37641 -12.24105 -12.02354 -11.95371 -11.68554 -11.64146 -11.40735 -10.90633 -10.67228 -10.57779 -9.89640 -9.65887 -8.86538 -8.18862 -8.18553 -5.47853 0.48641 0.69414 1.35034 1.45321 1.55928 1.68138 2.25250 2.37875 2.45841 2.95056 3.02878 3.36981 3.69559 3.93025 4.00742 4.03876 4.08499 4.18007 4.26396 4.32577 4.36019 4.42323 4.51647 4.52195 4.55434 4.56674 4.61256 4.61934 4.72884 4.75551 4.79976 4.80498 4.88986 4.89325 4.90110 5.02227 5.02850 5.04769 5.09152 5.16854 5.28425 5.37576 5.42080 5.61137 5.63375 5.81279 5.92809 5.96135 6.19688 6.36666 6.56596 6.64114 6.96200 7.28346 7.65923 8.07009 9.00866 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.002893 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.117569 B = 9676.684014 C =10454.017486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 H 0.073 0.927 4 C 0.109 3.891 5 N -0.713 5.713 6 C 0.509 3.491 7 O -0.585 6.585 8 C -0.132 4.132 9 C -0.052 4.052 10 C -0.042 4.042 11 C -0.192 4.192 12 C -0.075 4.075 13 C -0.210 4.210 14 C 0.204 3.796 15 N -0.647 5.647 16 C 0.088 3.912 17 C 0.090 3.910 18 C -0.204 4.204 19 N -0.609 5.609 20 C 0.113 3.887 21 C -0.255 4.255 22 H 0.049 0.951 23 C -0.016 4.016 24 N -0.943 5.943 25 Si 0.933 3.067 26 H -0.297 1.297 27 H -0.318 1.318 28 H -0.231 1.231 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.408 0.592 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.128 0.872 49 H 0.019 0.981 50 H 0.020 0.980 51 H 0.058 0.942 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.015 -1.344 18.721 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.050 3.950 3 H 0.091 0.909 4 C -0.017 4.017 5 N -0.364 5.364 6 C 0.297 3.703 7 O -0.466 6.466 8 C -0.172 4.172 9 C -0.090 4.090 10 C -0.043 4.043 11 C -0.212 4.212 12 C -0.094 4.094 13 C -0.232 4.232 14 C 0.101 3.899 15 N -0.359 5.359 16 C -0.054 4.054 17 C -0.053 4.053 18 C -0.226 4.226 19 N -0.334 5.334 20 C -0.031 4.031 21 C -0.384 4.384 22 H 0.067 0.933 23 C -0.213 4.213 24 N -0.587 5.587 25 Si 0.764 3.236 26 H -0.226 1.226 27 H -0.248 1.248 28 H -0.155 1.155 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.245 0.755 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.146 0.854 49 H 0.037 0.963 50 H 0.038 0.962 51 H 0.077 0.923 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.783 -1.484 19.344 22.699 hybrid contribution 0.617 -0.584 -0.890 1.231 sum 12.400 -2.068 18.454 22.329 Atomic orbital electron populations 1.22041 0.94634 1.02017 1.02019 1.20913 0.94448 0.95772 0.83877 0.90901 1.21895 0.79907 1.00766 0.99112 1.46208 1.08527 1.58383 1.23278 1.20969 0.90850 0.76878 0.81622 1.90622 1.71335 1.49924 1.34755 1.21672 0.90656 1.04125 1.00756 1.20196 0.90541 1.01362 0.96930 1.19649 0.94695 0.94013 0.95905 1.21023 0.95510 0.99602 1.05105 1.21130 0.93232 0.98286 0.96716 1.20896 1.00573 0.95389 1.06384 1.18001 0.90477 0.88910 0.92478 1.46557 1.05538 1.20748 1.63017 1.21749 0.99110 0.87376 0.97202 1.21762 0.78422 1.02931 1.02167 1.20672 0.91828 1.01382 1.08742 1.44171 1.57825 1.09179 1.22180 1.21272 0.97504 0.85390 0.98930 1.18674 1.10718 0.94129 1.14886 0.93283 1.25860 0.98408 1.00925 0.96091 1.70052 1.33149 1.43853 1.11623 0.86164 0.75589 0.80042 0.81819 1.22609 1.24763 1.15463 0.90305 0.93213 0.92719 0.92802 0.90708 0.75496 0.87485 0.89185 0.91121 0.90453 0.86258 0.84342 0.84506 0.92889 0.89905 0.91717 0.93202 0.89865 0.90991 0.85386 0.96260 0.96183 0.92332 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 9.19 71.98 0.66 -3.56 16 2 C 0.16 5.35 2.87 44.99 0.13 5.48 16 3 H 0.07 2.57 7.89 -2.39 -0.02 2.55 16 4 C 0.11 3.53 4.93 86.38 0.43 3.95 16 5 N -0.71 -24.60 4.54 -463.05 -2.10 -26.71 16 6 C 0.51 17.26 7.83 87.66 0.69 17.94 16 7 O -0.58 -22.53 15.98 -3.04 -0.05 -22.58 16 8 C -0.13 -3.76 5.68 29.85 0.17 -3.59 16 9 C -0.05 -1.39 4.63 29.85 0.14 -1.25 16 10 C -0.04 -1.06 5.13 -19.88 -0.10 -1.16 16 11 C -0.19 -4.73 9.70 22.29 0.22 -4.51 16 12 C -0.08 -1.63 10.04 22.25 0.22 -1.40 16 13 C -0.21 -4.38 9.20 22.40 0.21 -4.18 16 14 C 0.20 4.49 6.55 38.21 0.25 4.75 16 15 N -0.65 -11.30 3.41 -747.29 -2.55 -13.85 16 16 C 0.09 1.20 10.19 127.77 1.30 2.50 16 17 C 0.09 1.06 10.18 127.77 1.30 2.36 16 18 C -0.20 -4.81 8.86 22.40 0.20 -4.61 16 19 N -0.61 -25.91 1.93 -702.78 -1.35 -27.26 16 20 C 0.11 4.62 8.77 127.77 1.12 5.74 16 21 C -0.25 -13.22 9.56 84.03 0.80 -12.41 16 22 H 0.05 2.82 8.06 -2.91 -0.02 2.79 16 23 C -0.02 -0.87 5.27 84.86 0.45 -0.42 16 24 N -0.94 -56.66 13.97 21.65 0.30 -56.36 16 25 Si 0.93 43.44 24.74 68.60 1.70 45.14 16 26 H -0.30 -14.11 6.62 99.48 0.66 -13.45 16 27 H -0.32 -15.44 7.11 99.48 0.71 -14.73 16 28 H -0.23 -9.54 5.40 99.48 0.54 -9.00 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.52 7.67 -2.38 -0.02 1.50 16 32 H 0.05 1.81 6.86 -2.39 -0.02 1.80 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.41 14.98 6.71 -92.71 -0.62 14.36 16 35 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.09 2.65 8.11 -2.39 -0.02 2.63 16 37 H 0.07 1.97 8.04 -2.39 -0.02 1.95 16 38 H 0.08 2.02 8.04 -2.39 -0.02 2.00 16 39 H 0.12 2.79 8.06 -2.91 -0.02 2.76 16 40 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 41 H 0.14 2.24 6.16 -2.91 -0.02 2.22 16 42 H 0.05 0.65 8.14 -2.38 -0.02 0.64 16 43 H 0.08 0.82 8.07 -2.38 -0.02 0.80 16 44 H 0.06 0.95 6.20 -2.39 -0.01 0.94 16 45 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.08 0.67 8.07 -2.38 -0.02 0.65 16 47 H 0.07 0.79 6.22 -2.39 -0.01 0.77 16 48 H 0.13 2.72 6.14 -2.91 -0.02 2.70 16 49 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.02 0.90 2.75 -2.39 -0.01 0.89 16 51 H 0.06 2.09 6.54 -2.38 -0.02 2.07 16 52 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -67.29 405.23 4.19 -63.10 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.07 Total: 32.89 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 8.18 Total: 5.63 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -5.70 Total: -124.18 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.70 Total: 45.14 kcal Total: -67.29 4.19 -63.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734052423.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.674 kcal (2) G-P(sol) polarization free energy of solvation -67.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds