Wall clock time and date at job start Tue Mar 31 2020 17:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47696 * 2 1 4 4 C 1.53003 * 109.47085 * 239.99605 * 2 1 3 5 5 N 1.46493 * 109.47477 * 185.00309 * 4 2 1 6 6 C 1.34775 * 120.00107 * 180.28048 * 5 4 2 7 7 O 1.21281 * 120.00289 * 359.71947 * 6 5 4 8 8 C 1.50704 * 119.99995 * 179.72390 * 6 5 4 9 9 C 1.53003 * 109.47148 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.46949 * 179.97438 * 9 8 6 11 11 C 1.38306 * 119.96339 * 269.72944 * 10 9 8 12 12 C 1.38267 * 120.14920 * 179.72683 * 11 10 9 13 13 C 1.38124 * 120.07234 * 0.54828 * 12 11 10 14 14 C 1.38893 * 119.92815 * 359.72631 * 13 12 11 15 15 N 1.39670 * 120.07744 * 179.97438 * 14 13 12 16 16 C 1.46499 * 120.00142 * 173.99030 * 15 14 13 17 17 C 1.46506 * 119.99916 * 353.98823 * 15 14 13 18 18 C 1.38088 * 119.96390 * 90.00119 * 10 9 8 19 19 N 1.46505 * 109.47024 * 120.00338 * 2 1 3 20 20 C 1.46501 * 120.00207 * 59.99421 * 19 2 1 21 21 C 1.36931 * 119.99626 * 239.99772 * 19 2 1 22 22 H 1.07997 * 120.00525 * 24.80481 * 21 19 2 23 23 C 1.38816 * 119.99638 * 204.80234 * 21 19 2 24 24 N 1.31612 * 120.00262 * 6.06538 * 23 21 19 25 25 Si 1.86806 * 119.99872 * 186.06137 * 23 21 19 26 26 H 1.48500 * 109.47094 * 90.00324 * 25 23 21 27 27 H 1.48505 * 109.46886 * 210.00219 * 25 23 21 28 28 H 1.48503 * 109.46901 * 330.00055 * 25 23 21 29 29 H 1.09002 * 109.46727 * 300.00066 * 1 2 3 30 30 H 1.09004 * 109.46826 * 59.99798 * 1 2 3 31 31 H 1.08999 * 109.47696 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46809 * 65.00318 * 4 2 1 33 33 H 1.08998 * 109.47130 * 305.00937 * 4 2 1 34 34 H 0.97005 * 120.00099 * 0.02562 * 5 4 2 35 35 H 1.08997 * 109.47092 * 300.00365 * 8 6 5 36 36 H 1.09008 * 109.46734 * 59.99677 * 8 6 5 37 37 H 1.09000 * 109.46929 * 300.00037 * 9 8 6 38 38 H 1.08995 * 109.46701 * 60.00157 * 9 8 6 39 39 H 1.08001 * 119.92469 * 359.97438 * 11 10 9 40 40 H 1.08002 * 119.96488 * 180.27106 * 12 11 10 41 41 H 1.08004 * 120.03485 * 179.75163 * 13 12 11 42 42 H 1.08994 * 109.46797 * 90.00205 * 16 15 14 43 43 H 1.08997 * 109.47012 * 209.99914 * 16 15 14 44 44 H 1.09000 * 109.46921 * 329.99766 * 16 15 14 45 45 H 1.09002 * 109.47180 * 5.08414 * 17 15 14 46 46 H 1.09000 * 109.47217 * 125.08169 * 17 15 14 47 47 H 1.08999 * 109.47328 * 245.08151 * 17 15 14 48 48 H 1.08000 * 120.03266 * 359.97438 * 18 10 9 49 49 H 1.08996 * 109.47134 * 95.05792 * 20 19 2 50 50 H 1.08996 * 109.46924 * 215.06456 * 20 19 2 51 51 H 1.09002 * 109.46914 * 335.06162 * 20 19 2 52 52 H 0.96997 * 120.00558 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8266 -1.1906 6 6 4.1734 -1.4240 -2.1936 7 8 3.5703 -1.8790 -3.1424 8 6 5.6758 -1.5267 -2.1362 9 6 6.1862 -2.2436 -3.3879 10 6 7.6886 -2.3457 -3.3307 11 6 8.4703 -1.3427 -3.8745 12 6 9.8491 -1.4297 -3.8192 13 6 10.4504 -2.5250 -3.2304 14 6 9.6684 -3.5368 -2.6884 15 7 10.2732 -4.6460 -2.0927 16 6 9.4529 -5.6468 -1.4059 17 6 11.7279 -4.8085 -2.1547 18 6 8.2833 -3.4434 -2.7406 19 7 2.0183 -0.6907 1.1962 20 6 1.6643 -2.0933 1.4280 21 6 2.8056 -0.0252 2.0975 22 1 2.7508 1.0508 2.1714 23 6 3.6742 -0.7338 2.9163 24 7 3.8295 -2.0296 2.7459 25 14 4.6227 0.1519 4.2600 26 1 3.8283 0.1431 5.5147 27 1 5.9175 -0.5383 4.4890 28 1 4.8762 1.5549 3.8444 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7516 -0.1584 -2.1370 33 1 1.6053 -1.7198 -1.2951 34 1 3.9824 -0.4630 -0.4316 35 1 6.1068 -0.5267 -2.0886 36 1 5.9678 -2.0907 -1.2503 37 1 5.7551 -3.2437 -3.4349 38 1 5.8941 -1.6800 -4.2738 39 1 8.0027 -0.4876 -4.3398 40 1 10.4567 -0.6426 -4.2409 41 1 11.5275 -2.5943 -3.1911 42 1 9.1536 -6.4192 -2.1143 43 1 10.0302 -6.0979 -0.5989 44 1 8.5648 -5.1678 -0.9936 45 1 12.1722 -3.9293 -2.6214 46 1 12.1240 -4.9236 -1.1458 47 1 11.9699 -5.6936 -2.7431 48 1 7.6723 -4.2282 -2.3197 49 1 2.4598 -2.7359 1.0508 50 1 1.5356 -2.2635 2.4969 51 1 0.7340 -2.3238 0.9088 52 1 4.4367 -2.5247 3.3178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734052424.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:01 Heat of formation + Delta-G solvation = 12.979415 kcal Electronic energy + Delta-G solvation = -28803.082173 eV Core-core repulsion = 24996.168936 eV Total energy + Delta-G solvation = -3806.913237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.82189 -39.04499 -36.81225 -36.43733 -33.67287 -33.45396 -32.00306 -30.46741 -29.70222 -29.22560 -28.23177 -26.04811 -25.89645 -24.88947 -23.80904 -22.89489 -21.60814 -20.17283 -19.61356 -19.13135 -17.41097 -16.93603 -16.36528 -16.00638 -15.48037 -15.42676 -15.26551 -15.20839 -14.90250 -14.27068 -14.01535 -13.82119 -13.60654 -13.18181 -12.99755 -12.82989 -12.72638 -12.64067 -12.51779 -12.19679 -12.13553 -11.94955 -11.89606 -11.68206 -11.57757 -11.37828 -11.03489 -10.85489 -10.80344 -10.67913 -10.64611 -10.38212 -10.29393 -9.88589 -9.84893 -9.79077 -9.29603 -8.66379 -8.60544 -8.28628 -7.33625 -6.79752 -5.76651 -3.26977 1.45229 1.64306 3.01234 3.25093 3.33187 3.40405 3.41123 3.80269 4.01726 4.42853 4.67494 4.83449 4.95101 5.09103 5.12538 5.18887 5.29968 5.33185 5.35906 5.40684 5.41642 5.45844 5.46975 5.57237 5.61453 5.64637 5.65949 5.75607 5.89743 6.00266 6.04622 6.11042 6.12920 6.18727 6.27007 6.37436 6.39236 6.42563 6.56596 6.71254 6.78397 6.83194 6.90104 6.92909 7.14470 7.21976 7.42190 7.44130 7.73439 7.80397 8.29651 8.35508 8.89927 9.19528 9.81432 10.32101 11.25820 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010383 B = 0.002982 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.021568 B = 9388.515067 C =10885.632155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.067 0.933 4 C 0.108 3.892 5 N -0.701 5.701 6 C 0.509 3.491 7 O -0.567 6.567 8 C -0.133 4.133 9 C -0.063 4.063 10 C -0.029 4.029 11 C -0.174 4.174 12 C -0.072 4.072 13 C -0.208 4.208 14 C 0.214 3.786 15 N -0.641 5.641 16 C 0.093 3.907 17 C 0.091 3.909 18 C -0.190 4.190 19 N -0.595 5.595 20 C 0.165 3.835 21 C -0.260 4.260 22 H 0.067 0.933 23 C 0.008 3.992 24 N -0.903 5.903 25 Si 0.901 3.099 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.414 0.586 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.046 0.954 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.053 0.947 47 H 0.049 0.951 48 H 0.122 0.878 49 H 0.029 0.971 50 H 0.041 0.959 51 H -0.004 1.004 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.651 -2.499 -10.756 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.018 4.018 5 N -0.351 5.351 6 C 0.296 3.704 7 O -0.447 6.447 8 C -0.173 4.173 9 C -0.101 4.101 10 C -0.030 4.030 11 C -0.194 4.194 12 C -0.091 4.091 13 C -0.230 4.230 14 C 0.113 3.887 15 N -0.354 5.354 16 C -0.050 4.050 17 C -0.052 4.052 18 C -0.212 4.212 19 N -0.318 5.318 20 C 0.021 3.979 21 C -0.390 4.390 22 H 0.085 0.915 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.732 3.268 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.251 0.749 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.140 0.860 49 H 0.048 0.952 50 H 0.060 0.940 51 H 0.014 0.986 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.407 -3.107 -11.194 16.281 hybrid contribution 0.862 0.418 1.374 1.675 sum 12.269 -2.690 -9.820 15.943 Atomic orbital electron populations 1.22177 0.97626 1.01419 1.00573 1.20651 0.92507 0.95863 0.86073 0.91428 1.21897 0.80397 1.00808 0.98715 1.45873 1.08014 1.58275 1.22983 1.20547 0.89836 0.77694 0.82361 1.90626 1.70694 1.49092 1.34312 1.21581 0.92616 1.02944 1.00113 1.20326 0.89786 1.02152 0.97807 1.19699 0.95425 0.93128 0.94746 1.20829 0.93486 0.99926 1.05149 1.20829 0.94662 0.96595 0.97030 1.20643 0.99020 0.95799 1.07513 1.17814 0.91897 0.86819 0.92182 1.46278 1.05726 1.23268 1.60100 1.21617 0.95924 0.91258 0.96191 1.21660 0.80274 1.01952 1.01310 1.20602 0.92376 1.00897 1.07304 1.43920 1.58108 1.09668 1.20103 1.20767 0.93904 0.84490 0.98769 1.19223 1.14768 0.91394 1.13580 0.91532 1.25071 0.97854 0.95909 1.00288 1.70063 1.38795 1.06081 1.39828 0.86310 0.79389 0.78901 0.82235 1.21583 1.21751 1.20497 0.92516 0.93602 0.92976 0.93060 0.92573 0.74899 0.89186 0.88690 0.90414 0.90339 0.86421 0.86386 0.86294 0.93505 0.91671 0.90973 0.90474 0.92793 0.93250 0.85986 0.95217 0.93977 0.98560 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.18 37.16 0.34 -2.30 16 2 C 0.16 3.03 2.87 -67.93 -0.19 2.83 16 3 H 0.07 1.28 7.88 -51.93 -0.41 0.88 16 4 C 0.11 2.04 4.97 -4.04 -0.02 2.02 16 5 N -0.70 -13.41 5.39 -60.29 -0.32 -13.73 16 6 C 0.51 9.44 7.83 -10.98 -0.09 9.36 16 7 O -0.57 -11.94 15.98 5.56 0.09 -11.85 16 8 C -0.13 -2.01 5.68 -27.88 -0.16 -2.17 16 9 C -0.06 -0.88 4.63 -27.88 -0.13 -1.01 16 10 C -0.03 -0.39 5.13 -104.65 -0.54 -0.93 16 11 C -0.17 -2.13 9.69 -39.55 -0.38 -2.51 16 12 C -0.07 -0.81 10.04 -39.61 -0.40 -1.21 16 13 C -0.21 -2.37 9.31 -39.38 -0.37 -2.74 16 14 C 0.21 2.67 6.53 -83.79 -0.55 2.12 16 15 N -0.64 -6.91 3.41 -187.55 -0.64 -7.55 16 16 C 0.09 0.88 10.09 59.85 0.60 1.48 16 17 C 0.09 0.72 10.63 59.85 0.64 1.36 16 18 C -0.19 -2.52 8.81 -39.38 -0.35 -2.86 16 19 N -0.59 -13.73 2.29 -173.48 -0.40 -14.13 16 20 C 0.17 3.94 8.08 59.85 0.48 4.42 16 21 C -0.26 -6.57 9.32 -15.06 -0.14 -6.71 16 22 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 23 C 0.01 0.20 5.23 -17.43 -0.09 0.11 16 24 N -0.90 -24.59 10.46 55.49 0.58 -24.01 16 25 Si 0.90 20.77 29.56 -169.99 -5.02 15.75 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.88 6.66 -51.93 -0.35 0.54 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.14 7.84 -51.93 -0.41 0.74 16 34 H 0.41 8.34 7.89 -40.82 -0.32 8.01 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 37 H 0.08 1.15 8.04 -51.93 -0.42 0.74 16 38 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 1.11 5.75 -52.48 -0.30 0.81 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.51 8.07 -51.93 -0.42 0.09 16 44 H 0.07 0.74 6.47 -51.93 -0.34 0.40 16 45 H 0.08 0.55 5.32 -51.93 -0.28 0.28 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.12 1.57 6.32 -52.49 -0.33 1.24 16 49 H 0.03 0.77 7.34 -51.93 -0.38 0.39 16 50 H 0.04 1.09 7.27 -51.93 -0.38 0.71 16 51 H 0.00 -0.09 6.44 -51.93 -0.33 -0.42 16 52 H 0.25 6.77 8.31 -40.82 -0.34 6.44 16 LS Contribution 413.13 15.07 6.23 6.23 Total: -1.00 -29.84 413.13 -9.67 -39.51 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -8.85 Total: 8.52 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.33 Total: 1.26 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.78 Total: -59.42 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -29.84 -9.67 -39.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734052424.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.493 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds