Wall clock time and date at job start Tue Mar 31 2020 17:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47696 * 2 1 4 4 C 1.53003 * 109.47085 * 239.99605 * 2 1 3 5 5 N 1.46493 * 109.47477 * 185.00309 * 4 2 1 6 6 C 1.34775 * 120.00107 * 180.28048 * 5 4 2 7 7 O 1.21281 * 120.00289 * 359.71947 * 6 5 4 8 8 C 1.50704 * 119.99995 * 179.72390 * 6 5 4 9 9 C 1.53003 * 109.47148 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.46949 * 179.97438 * 9 8 6 11 11 C 1.38306 * 119.96339 * 269.72944 * 10 9 8 12 12 C 1.38267 * 120.14920 * 179.72683 * 11 10 9 13 13 C 1.38124 * 120.07234 * 0.54828 * 12 11 10 14 14 C 1.38893 * 119.92815 * 359.72631 * 13 12 11 15 15 N 1.39670 * 120.07744 * 179.97438 * 14 13 12 16 16 C 1.46499 * 120.00142 * 173.99030 * 15 14 13 17 17 C 1.46506 * 119.99916 * 353.98823 * 15 14 13 18 18 C 1.38088 * 119.96390 * 90.00119 * 10 9 8 19 19 N 1.46505 * 109.47024 * 120.00338 * 2 1 3 20 20 C 1.46501 * 120.00207 * 59.99421 * 19 2 1 21 21 C 1.36931 * 119.99626 * 239.99772 * 19 2 1 22 22 H 1.07997 * 120.00525 * 24.80481 * 21 19 2 23 23 C 1.38816 * 119.99638 * 204.80234 * 21 19 2 24 24 N 1.31612 * 120.00262 * 6.06538 * 23 21 19 25 25 Si 1.86806 * 119.99872 * 186.06137 * 23 21 19 26 26 H 1.48500 * 109.47094 * 90.00324 * 25 23 21 27 27 H 1.48505 * 109.46886 * 210.00219 * 25 23 21 28 28 H 1.48503 * 109.46901 * 330.00055 * 25 23 21 29 29 H 1.09002 * 109.46727 * 300.00066 * 1 2 3 30 30 H 1.09004 * 109.46826 * 59.99798 * 1 2 3 31 31 H 1.08999 * 109.47696 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46809 * 65.00318 * 4 2 1 33 33 H 1.08998 * 109.47130 * 305.00937 * 4 2 1 34 34 H 0.97005 * 120.00099 * 0.02562 * 5 4 2 35 35 H 1.08997 * 109.47092 * 300.00365 * 8 6 5 36 36 H 1.09008 * 109.46734 * 59.99677 * 8 6 5 37 37 H 1.09000 * 109.46929 * 300.00037 * 9 8 6 38 38 H 1.08995 * 109.46701 * 60.00157 * 9 8 6 39 39 H 1.08001 * 119.92469 * 359.97438 * 11 10 9 40 40 H 1.08002 * 119.96488 * 180.27106 * 12 11 10 41 41 H 1.08004 * 120.03485 * 179.75163 * 13 12 11 42 42 H 1.08994 * 109.46797 * 90.00205 * 16 15 14 43 43 H 1.08997 * 109.47012 * 209.99914 * 16 15 14 44 44 H 1.09000 * 109.46921 * 329.99766 * 16 15 14 45 45 H 1.09002 * 109.47180 * 5.08414 * 17 15 14 46 46 H 1.09000 * 109.47217 * 125.08169 * 17 15 14 47 47 H 1.08999 * 109.47328 * 245.08151 * 17 15 14 48 48 H 1.08000 * 120.03266 * 359.97438 * 18 10 9 49 49 H 1.08996 * 109.47134 * 95.05792 * 20 19 2 50 50 H 1.08996 * 109.46924 * 215.06456 * 20 19 2 51 51 H 1.09002 * 109.46914 * 335.06162 * 20 19 2 52 52 H 0.96997 * 120.00558 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8266 -1.1906 6 6 4.1734 -1.4240 -2.1936 7 8 3.5703 -1.8790 -3.1424 8 6 5.6758 -1.5267 -2.1362 9 6 6.1862 -2.2436 -3.3879 10 6 7.6886 -2.3457 -3.3307 11 6 8.4703 -1.3427 -3.8745 12 6 9.8491 -1.4297 -3.8192 13 6 10.4504 -2.5250 -3.2304 14 6 9.6684 -3.5368 -2.6884 15 7 10.2732 -4.6460 -2.0927 16 6 9.4529 -5.6468 -1.4059 17 6 11.7279 -4.8085 -2.1547 18 6 8.2833 -3.4434 -2.7406 19 7 2.0183 -0.6907 1.1962 20 6 1.6643 -2.0933 1.4280 21 6 2.8056 -0.0252 2.0975 22 1 2.7508 1.0508 2.1714 23 6 3.6742 -0.7338 2.9163 24 7 3.8295 -2.0296 2.7459 25 14 4.6227 0.1519 4.2600 26 1 3.8283 0.1431 5.5147 27 1 5.9175 -0.5383 4.4890 28 1 4.8762 1.5549 3.8444 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7516 -0.1584 -2.1370 33 1 1.6053 -1.7198 -1.2951 34 1 3.9824 -0.4630 -0.4316 35 1 6.1068 -0.5267 -2.0886 36 1 5.9678 -2.0907 -1.2503 37 1 5.7551 -3.2437 -3.4349 38 1 5.8941 -1.6800 -4.2738 39 1 8.0027 -0.4876 -4.3398 40 1 10.4567 -0.6426 -4.2409 41 1 11.5275 -2.5943 -3.1911 42 1 9.1536 -6.4192 -2.1143 43 1 10.0302 -6.0979 -0.5989 44 1 8.5648 -5.1678 -0.9936 45 1 12.1722 -3.9293 -2.6214 46 1 12.1240 -4.9236 -1.1458 47 1 11.9699 -5.6936 -2.7431 48 1 7.6723 -4.2282 -2.3197 49 1 2.4598 -2.7359 1.0508 50 1 1.5356 -2.2635 2.4969 51 1 0.7340 -2.3238 0.9088 52 1 4.4367 -2.5247 3.3178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734052424.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:00 Heat of formation + Delta-G solvation = -2.325424 kcal Electronic energy + Delta-G solvation = -28803.745840 eV Core-core repulsion = 24996.168936 eV Total energy + Delta-G solvation = -3807.576904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.89848 -40.38194 -38.41259 -37.39380 -35.32741 -34.61345 -33.71284 -31.46242 -31.07127 -30.52434 -29.05024 -27.99193 -27.24623 -25.69334 -25.17332 -24.57586 -22.51903 -21.27844 -21.04213 -20.67045 -18.82799 -18.35198 -17.73553 -17.17193 -16.96150 -16.80693 -16.37599 -16.30768 -15.94884 -15.80067 -15.24079 -14.98941 -14.74730 -14.63528 -14.37779 -14.22074 -13.99461 -13.76313 -13.63532 -13.49623 -13.38710 -13.11948 -12.93421 -12.87165 -12.76258 -12.65490 -12.60954 -12.44352 -12.34901 -12.23825 -12.08167 -11.92240 -11.73502 -11.60787 -11.46148 -10.85291 -10.65554 -10.58973 -9.85729 -9.63299 -8.72413 -8.17839 -7.75015 -5.26480 0.51461 0.72713 1.49640 1.52476 1.59019 1.74715 2.25613 2.45429 2.54522 2.98337 3.38901 3.66638 3.74479 3.95190 4.03501 4.09173 4.12124 4.20118 4.26998 4.35284 4.44853 4.48574 4.51030 4.58876 4.63143 4.63922 4.67727 4.74423 4.74552 4.78548 4.85936 4.86306 4.89053 4.92459 5.06486 5.10398 5.12114 5.20081 5.29538 5.33961 5.40041 5.50944 5.67159 5.67279 5.73528 5.79545 5.84187 6.00613 6.35862 6.38967 6.58480 6.74127 7.21510 7.36664 7.91865 8.38433 9.26028 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010383 B = 0.002982 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.021568 B = 9388.515067 C =10885.632155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.074 0.926 4 C 0.114 3.886 5 N -0.705 5.705 6 C 0.507 3.493 7 O -0.593 6.593 8 C -0.122 4.122 9 C -0.052 4.052 10 C -0.041 4.041 11 C -0.184 4.184 12 C -0.071 4.071 13 C -0.211 4.211 14 C 0.202 3.798 15 N -0.648 5.648 16 C 0.091 3.909 17 C 0.086 3.914 18 C -0.210 4.210 19 N -0.603 5.603 20 C 0.184 3.816 21 C -0.259 4.259 22 H 0.073 0.927 23 C -0.039 4.039 24 N -0.931 5.931 25 Si 0.959 3.041 26 H -0.294 1.294 27 H -0.300 1.300 28 H -0.267 1.267 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.410 0.590 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.051 0.949 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.114 0.886 49 H 0.001 0.999 50 H 0.014 0.986 51 H 0.019 0.981 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.819 -0.993 -11.443 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.049 3.951 3 H 0.092 0.908 4 C -0.012 4.012 5 N -0.354 5.354 6 C 0.295 3.705 7 O -0.475 6.475 8 C -0.162 4.162 9 C -0.090 4.090 10 C -0.042 4.042 11 C -0.204 4.204 12 C -0.090 4.090 13 C -0.233 4.233 14 C 0.100 3.900 15 N -0.361 5.361 16 C -0.053 4.053 17 C -0.056 4.056 18 C -0.233 4.233 19 N -0.326 5.326 20 C 0.039 3.961 21 C -0.389 4.389 22 H 0.090 0.910 23 C -0.235 4.235 24 N -0.577 5.577 25 Si 0.788 3.212 26 H -0.222 1.222 27 H -0.227 1.227 28 H -0.192 1.192 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.246 0.754 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.148 0.852 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.075 0.925 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.132 0.868 49 H 0.019 0.981 50 H 0.033 0.967 51 H 0.037 0.963 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.567 -1.581 -11.893 17.375 hybrid contribution 0.482 -0.058 1.554 1.628 sum 13.049 -1.639 -10.339 16.729 Atomic orbital electron populations 1.22069 0.95252 1.01565 1.01991 1.20839 0.94137 0.95570 0.84506 0.90809 1.21835 0.80267 0.99948 0.99177 1.45964 1.08228 1.58322 1.22874 1.21063 0.91060 0.76747 0.81633 1.90606 1.71541 1.50108 1.35273 1.21538 0.90251 1.04037 1.00352 1.20187 0.90672 1.01028 0.97143 1.19645 0.94741 0.93914 0.95857 1.21032 0.94165 0.99980 1.05229 1.21175 0.94473 0.97106 0.96235 1.20970 1.00181 0.95372 1.06807 1.18029 0.91772 0.87791 0.92430 1.46534 1.06978 1.22879 1.59674 1.21666 0.95725 0.91098 0.96764 1.21840 0.78596 1.02857 1.02297 1.20660 0.93178 1.01113 1.08322 1.44046 1.58008 1.09292 1.21301 1.20418 0.93877 0.84860 0.96952 1.19503 1.14148 0.91715 1.13529 0.90963 1.25671 0.99069 0.96422 1.02342 1.70228 1.39568 1.07272 1.40631 0.85402 0.77622 0.78434 0.79724 1.22161 1.22669 1.19151 0.92804 0.90480 0.93447 0.91306 0.94337 0.75432 0.87268 0.89525 0.91976 0.90241 0.85229 0.83624 0.84088 0.93061 0.89946 0.92504 0.89662 0.91769 0.92137 0.86803 0.98103 0.96732 0.96276 0.94595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 9.18 71.98 0.66 -3.98 16 2 C 0.16 5.78 2.87 44.99 0.13 5.91 16 3 H 0.07 2.65 7.88 -2.39 -0.02 2.63 16 4 C 0.11 4.19 4.97 86.38 0.43 4.62 16 5 N -0.70 -26.85 5.39 -463.06 -2.49 -29.35 16 6 C 0.51 18.90 7.83 87.66 0.69 19.59 16 7 O -0.59 -25.15 15.98 -3.03 -0.05 -25.20 16 8 C -0.12 -3.74 5.68 29.85 0.17 -3.57 16 9 C -0.05 -1.50 4.63 29.85 0.14 -1.36 16 10 C -0.04 -1.09 5.13 -19.89 -0.10 -1.19 16 11 C -0.18 -4.27 9.69 22.29 0.22 -4.05 16 12 C -0.07 -1.44 10.04 22.25 0.22 -1.22 16 13 C -0.21 -4.42 9.31 22.40 0.21 -4.21 16 14 C 0.20 4.91 6.53 38.21 0.25 5.15 16 15 N -0.65 -13.40 3.41 -747.29 -2.55 -15.94 16 16 C 0.09 1.70 10.09 127.77 1.29 2.99 16 17 C 0.09 1.20 10.63 127.77 1.36 2.56 16 18 C -0.21 -5.70 8.81 22.40 0.20 -5.50 16 19 N -0.60 -27.61 2.29 -702.78 -1.61 -29.21 16 20 C 0.18 8.89 8.08 127.77 1.03 9.93 16 21 C -0.26 -12.92 9.32 84.04 0.78 -12.14 16 22 H 0.07 3.49 7.81 -2.91 -0.02 3.47 16 23 C -0.04 -2.04 5.23 84.86 0.44 -1.59 16 24 N -0.93 -51.77 10.46 21.65 0.23 -51.54 16 25 Si 0.96 42.72 29.56 68.60 2.03 44.75 16 26 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 27 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.05 1.51 6.66 -2.39 -0.02 1.50 16 32 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.04 1.55 7.84 -2.39 -0.02 1.53 16 34 H 0.41 16.47 7.89 -92.70 -0.73 15.74 16 35 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 37 H 0.06 1.94 8.04 -2.39 -0.02 1.92 16 38 H 0.08 2.23 8.04 -2.39 -0.02 2.21 16 39 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 40 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.14 2.23 5.75 -2.91 -0.02 2.22 16 42 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 1.22 8.07 -2.39 -0.02 1.21 16 44 H 0.06 1.23 6.47 -2.39 -0.02 1.21 16 45 H 0.08 1.02 5.32 -2.39 -0.01 1.01 16 46 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 47 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.11 3.14 6.32 -2.91 -0.02 3.12 16 49 H 0.00 0.04 7.34 -2.39 -0.02 0.02 16 50 H 0.01 0.75 7.27 -2.39 -0.02 0.73 16 51 H 0.02 0.81 6.44 -2.39 -0.02 0.80 16 52 H 0.24 13.50 8.31 -92.71 -0.77 12.73 16 Total: -1.00 -63.95 413.13 3.84 -60.11 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: 0.17 Total: 34.47 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 8.11 Total: 11.92 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -6.42 Total: -126.05 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -63.95 3.84 -60.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734052424.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.783 kcal (2) G-P(sol) polarization free energy of solvation -63.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds