Wall clock time and date at job start Tue Mar 31 2020 18:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47131 * 2 1 4 4 C 1.36443 * 124.85237 * 264.97935 * 3 2 1 5 5 C 1.34486 * 108.85937 * 180.02562 * 4 3 2 6 6 C 1.46691 * 106.33082 * 359.97438 * 5 4 3 7 7 C 1.47266 * 126.94412 * 179.97438 * 6 5 4 8 8 O 1.21619 * 120.00155 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99519 * 359.75639 * 7 6 5 10 10 C 1.46503 * 119.99932 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47268 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47005 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47096 * 174.94619 * 12 11 10 14 14 H 1.08997 * 109.87638 * 306.26008 * 13 12 11 15 15 C 1.54323 * 109.88095 * 67.43501 * 13 12 11 16 16 C 1.55155 * 102.94623 * 141.60964 * 15 13 12 17 17 C 1.54917 * 101.57826 * 324.49920 * 16 15 13 18 18 N 1.47017 * 109.88529 * 185.24296 * 13 12 11 19 19 C 1.36934 * 125.64968 * 61.60279 * 18 13 12 20 20 H 1.08004 * 120.00263 * 14.68501 * 19 18 13 21 21 C 1.38809 * 120.00266 * 194.68434 * 19 18 13 22 22 N 1.31620 * 119.99924 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00266 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46975 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47220 * 119.99431 * 23 21 19 26 26 H 1.48490 * 109.47048 * 239.99955 * 23 21 19 27 27 C 1.34664 * 124.84985 * 85.28296 * 3 2 1 28 28 C 1.50697 * 125.80304 * 0.02562 * 27 3 2 29 29 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47067 * 299.99796 * 1 2 3 31 31 H 1.09000 * 109.47435 * 60.00054 * 1 2 3 32 32 H 1.08996 * 109.47067 * 240.00204 * 2 1 3 33 33 H 1.09000 * 109.47435 * 119.99946 * 2 1 3 34 34 H 1.08004 * 125.57462 * 0.06514 * 4 3 2 35 35 H 1.08004 * 126.83988 * 180.02562 * 5 4 3 36 36 H 0.96999 * 120.00885 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.46621 * 299.99740 * 10 9 7 38 38 H 1.08995 * 109.47128 * 59.99482 * 10 9 7 39 39 H 1.08996 * 109.47297 * 299.99859 * 11 10 9 40 40 H 1.09004 * 109.47151 * 59.99976 * 11 10 9 41 41 H 1.08996 * 109.47348 * 294.95307 * 12 11 10 42 42 H 1.09000 * 109.46809 * 54.95154 * 12 11 10 43 43 H 1.09004 * 110.71994 * 259.97644 * 15 13 12 44 44 H 1.09000 * 110.71952 * 23.24631 * 15 13 12 45 45 H 1.08994 * 111.00862 * 206.42782 * 16 15 13 46 46 H 1.08999 * 111.03719 * 82.58109 * 16 15 13 47 47 H 1.08995 * 110.36383 * 278.16727 * 17 16 15 48 48 H 1.09001 * 110.36431 * 155.84364 * 17 16 15 49 49 H 0.97000 * 119.99808 * 180.02562 * 22 21 19 50 50 H 1.09005 * 109.47235 * 270.15105 * 28 27 3 51 51 H 1.09006 * 109.46915 * 30.14829 * 28 27 3 52 52 H 1.08994 * 109.47469 * 150.14664 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3706 2.0837 -1.1154 5 6 2.7715 3.3132 -0.7462 6 6 2.6531 3.3642 0.7150 7 6 2.9756 4.5041 1.5899 8 8 2.8294 4.4074 2.7934 9 7 3.4379 5.6526 1.0573 10 6 3.7593 6.7864 1.9276 11 6 4.2604 7.9557 1.0777 12 6 4.5955 9.1401 1.9866 13 6 5.2143 10.2638 1.1528 14 1 6.0623 9.8804 0.5855 15 6 4.1570 10.8478 0.1923 16 6 4.4716 12.3670 0.2111 17 6 4.9055 12.5764 1.6835 18 7 5.6544 11.3557 2.0334 19 6 6.6022 11.2553 3.0166 20 1 7.2603 10.3995 3.0469 21 6 6.7173 12.2535 3.9743 22 7 5.9157 13.2968 3.9371 23 14 8.0109 12.1169 5.3151 24 1 8.7798 10.8593 5.1348 25 1 8.9342 13.2771 5.2322 26 1 7.3475 12.1060 6.6435 27 6 2.1891 2.1370 1.1014 28 6 1.9130 1.7051 2.5185 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.3330 1.7132 -2.1292 35 1 3.1120 4.1057 -1.3962 36 1 3.5586 5.7283 0.0978 37 1 2.8660 7.0901 2.4734 38 1 4.5350 6.4931 2.6349 39 1 5.1538 7.6518 0.5322 40 1 3.4850 8.2492 0.3701 41 1 3.6844 9.5010 2.4638 42 1 5.3045 8.8222 2.7510 43 1 4.2809 10.4407 -0.8113 44 1 3.1505 10.6578 0.5650 45 1 3.5825 12.9531 -0.0212 46 1 5.2850 12.6067 -0.4737 47 1 4.0308 12.6821 2.3253 48 1 5.5477 13.4530 1.7686 49 1 5.9964 13.9945 4.6061 50 1 0.8798 1.9396 2.7750 51 1 2.0750 0.6310 2.6090 52 1 2.5843 2.2322 3.1963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753034343.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:53 Heat of formation + Delta-G solvation = 13.742669 kcal Electronic energy + Delta-G solvation = -28075.739534 eV Core-core repulsion = 24268.859395 eV Total energy + Delta-G solvation = -3806.880140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.65680 -39.09366 -37.74392 -35.31805 -34.47961 -32.83894 -32.06920 -31.78054 -29.86428 -29.28293 -27.99138 -26.52047 -24.90560 -24.33770 -23.55160 -22.13336 -21.38895 -20.17316 -20.06436 -19.15831 -18.96460 -17.61519 -16.68824 -16.12885 -15.73332 -15.57832 -15.26919 -14.99509 -14.94822 -14.28290 -14.07055 -13.80371 -13.70208 -13.63782 -13.28384 -13.15700 -12.90619 -12.72526 -12.59337 -12.26820 -12.18080 -11.95589 -11.85346 -11.80724 -11.71590 -11.58720 -11.33275 -10.94489 -10.76396 -10.64132 -10.45186 -9.99927 -9.92361 -9.77657 -9.68751 -9.54917 -9.50430 -8.99354 -8.77995 -8.50682 -8.34329 -6.68893 -5.67368 -3.01927 1.63227 2.19846 2.45874 3.43863 3.48900 3.50487 3.52364 3.60365 4.13633 4.40346 4.46019 4.55583 4.60690 4.67300 4.96925 4.98150 5.04660 5.12543 5.23327 5.32141 5.34035 5.43740 5.47938 5.49134 5.52570 5.67154 5.68903 5.73198 5.77126 5.83557 5.94356 5.99547 6.10794 6.18176 6.26430 6.36823 6.43709 6.52323 6.54679 6.61948 6.67509 6.78887 6.81421 6.83343 6.97577 7.05964 7.26624 7.62500 7.71152 7.72835 7.87994 8.37369 8.45585 9.28446 9.90080 10.59726 11.45217 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.001933 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.063665 B =14484.169487 C =15460.521135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.095 3.905 3 N -0.443 5.443 4 C -0.019 4.019 5 C -0.167 4.167 6 C -0.235 4.235 7 C 0.588 3.412 8 O -0.554 6.554 9 N -0.725 5.725 10 C 0.121 3.879 11 C -0.126 4.126 12 C -0.121 4.121 13 C 0.162 3.838 14 H 0.031 0.969 15 C -0.124 4.124 16 C -0.151 4.151 17 C 0.173 3.827 18 N -0.597 5.597 19 C -0.223 4.223 20 H 0.075 0.925 21 C -0.007 4.007 22 N -0.918 5.918 23 Si 0.908 3.092 24 H -0.279 1.279 25 H -0.292 1.292 26 H -0.290 1.290 27 C 0.105 3.895 28 C -0.094 4.094 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.165 0.835 35 H 0.145 0.855 36 H 0.398 0.602 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.023 0.977 48 H 0.068 0.932 49 H 0.251 0.749 50 H 0.076 0.924 51 H 0.060 0.940 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.910 -25.946 -12.999 31.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 N -0.120 5.120 4 C -0.145 4.145 5 C -0.191 4.191 6 C -0.245 4.245 7 C 0.376 3.624 8 O -0.434 6.434 9 N -0.376 5.376 10 C -0.003 4.003 11 C -0.165 4.165 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.189 4.189 17 C 0.048 3.952 18 N -0.321 5.321 19 C -0.352 4.352 20 H 0.092 0.908 21 C -0.204 4.204 22 N -0.566 5.566 23 Si 0.738 3.262 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.217 1.217 27 C -0.011 4.011 28 C -0.151 4.151 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.182 0.818 35 H 0.163 0.837 36 H 0.232 0.768 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.041 0.959 48 H 0.086 0.914 49 H 0.062 0.938 50 H 0.094 0.906 51 H 0.079 0.921 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.035 -26.186 -11.974 30.836 hybrid contribution 0.654 -0.007 0.126 0.666 sum -10.381 -26.193 -11.848 30.565 Atomic orbital electron populations 1.22170 0.94145 1.03096 1.03445 1.21889 0.95731 0.80488 1.04494 1.43741 1.50402 1.11979 1.05851 1.21655 1.08213 0.93363 0.91232 1.22014 1.06572 0.97228 0.93313 1.20169 1.15952 0.94942 0.93457 1.17353 0.76321 0.81747 0.86935 1.90731 1.54745 1.82874 1.15014 1.45855 1.67229 1.13525 1.10943 1.21453 1.00618 0.85014 0.93174 1.21823 1.00865 0.94937 0.98869 1.22020 1.01302 0.94319 0.98537 1.20931 0.93508 0.89115 0.90981 0.95172 1.22587 0.98818 0.96607 0.98175 1.23012 0.99679 0.95303 1.00926 1.21399 0.95096 0.90855 0.87843 1.44554 1.44282 1.04482 1.38764 1.19016 1.07890 1.05977 1.02315 0.90760 1.24900 0.99254 0.97844 0.98367 1.69953 1.39752 1.10561 1.36291 0.86106 0.80712 0.77295 0.82063 1.20444 1.21869 1.21747 1.20301 1.00806 0.90661 0.89350 1.20567 1.03786 1.00828 0.89905 0.90621 0.91656 0.91741 0.88951 0.89185 0.81767 0.83733 0.76812 0.91642 0.91547 0.91826 0.91815 0.92288 0.91643 0.92667 0.92037 0.92610 0.92538 0.95855 0.91354 0.93849 0.90585 0.92116 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.24 37.16 0.38 -0.28 16 2 C 0.10 0.42 6.46 -4.04 -0.03 0.39 16 3 N -0.44 -3.52 2.69 -112.52 -0.30 -3.82 16 4 C -0.02 -0.15 11.32 -16.83 -0.19 -0.34 16 5 C -0.17 -1.58 10.56 -37.50 -0.40 -1.98 16 6 C -0.24 -2.87 6.29 -103.35 -0.65 -3.52 16 7 C 0.59 8.60 7.81 -12.59 -0.10 8.51 16 8 O -0.55 -9.84 14.82 5.26 0.08 -9.76 16 9 N -0.73 -9.32 5.55 -61.44 -0.34 -9.66 16 10 C 0.12 1.74 5.67 -4.04 -0.02 1.71 16 11 C -0.13 -1.77 5.10 -26.73 -0.14 -1.90 16 12 C -0.12 -2.24 4.72 -26.73 -0.13 -2.36 16 13 C 0.16 3.31 3.16 -66.96 -0.21 3.10 16 14 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 15 C -0.12 -2.17 5.71 -24.90 -0.14 -2.31 16 16 C -0.15 -2.89 7.09 -24.58 -0.17 -3.07 16 17 C 0.17 4.27 5.41 -2.52 -0.01 4.25 16 18 N -0.60 -15.25 3.13 -162.57 -0.51 -15.75 16 19 C -0.22 -6.25 9.71 -15.06 -0.15 -6.40 16 20 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 21 C -0.01 -0.20 5.47 -17.43 -0.10 -0.30 16 22 N -0.92 -27.37 10.58 55.49 0.59 -26.79 16 23 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 C 0.11 1.12 6.89 -81.88 -0.56 0.55 16 28 C -0.09 -0.88 9.51 36.00 0.34 -0.53 16 29 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.24 8.11 -51.93 -0.42 -0.18 16 33 H 0.09 0.32 7.04 -51.93 -0.37 -0.04 16 34 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 35 H 0.14 1.07 7.70 -52.48 -0.40 0.66 16 36 H 0.40 4.06 7.60 -40.82 -0.31 3.75 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.81 7.64 -51.93 -0.40 0.41 16 41 H 0.06 1.15 8.02 -51.93 -0.42 0.74 16 42 H 0.06 1.33 7.84 -51.93 -0.41 0.93 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.04 7.76 -51.93 -0.40 0.63 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.02 0.63 8.06 -51.93 -0.42 0.21 16 48 H 0.07 1.87 6.93 -51.93 -0.36 1.51 16 49 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 50 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.06 0.40 7.02 -51.93 -0.36 0.04 16 52 H 0.10 1.20 6.47 -51.93 -0.34 0.86 16 LS Contribution 412.70 15.07 6.22 6.22 Total: -1.00 -34.25 412.70 -10.78 -45.03 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -9.22 Total: 1.52 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -2.27 Total: -4.47 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.56 Total: -56.02 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.25 -10.78 -45.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753034343.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.775 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds