Wall clock time and date at job start Tue Mar 31 2020 18:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47131 * 2 1 4 4 C 1.36443 * 124.85237 * 264.97935 * 3 2 1 5 5 C 1.34486 * 108.85937 * 180.02562 * 4 3 2 6 6 C 1.46691 * 106.33082 * 359.97438 * 5 4 3 7 7 C 1.47266 * 126.94412 * 179.97438 * 6 5 4 8 8 O 1.21619 * 120.00155 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99519 * 359.75639 * 7 6 5 10 10 C 1.46503 * 119.99932 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47268 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47005 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47096 * 174.94619 * 12 11 10 14 14 H 1.08997 * 109.87638 * 306.26008 * 13 12 11 15 15 C 1.54323 * 109.88095 * 67.43501 * 13 12 11 16 16 C 1.55155 * 102.94623 * 141.60964 * 15 13 12 17 17 C 1.54917 * 101.57826 * 324.49920 * 16 15 13 18 18 N 1.47017 * 109.88529 * 185.24296 * 13 12 11 19 19 C 1.36934 * 125.64968 * 61.60279 * 18 13 12 20 20 H 1.08004 * 120.00263 * 14.68501 * 19 18 13 21 21 C 1.38809 * 120.00266 * 194.68434 * 19 18 13 22 22 N 1.31620 * 119.99924 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00266 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46975 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47220 * 119.99431 * 23 21 19 26 26 H 1.48490 * 109.47048 * 239.99955 * 23 21 19 27 27 C 1.34664 * 124.84985 * 85.28296 * 3 2 1 28 28 C 1.50697 * 125.80304 * 0.02562 * 27 3 2 29 29 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47067 * 299.99796 * 1 2 3 31 31 H 1.09000 * 109.47435 * 60.00054 * 1 2 3 32 32 H 1.08996 * 109.47067 * 240.00204 * 2 1 3 33 33 H 1.09000 * 109.47435 * 119.99946 * 2 1 3 34 34 H 1.08004 * 125.57462 * 0.06514 * 4 3 2 35 35 H 1.08004 * 126.83988 * 180.02562 * 5 4 3 36 36 H 0.96999 * 120.00885 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.46621 * 299.99740 * 10 9 7 38 38 H 1.08995 * 109.47128 * 59.99482 * 10 9 7 39 39 H 1.08996 * 109.47297 * 299.99859 * 11 10 9 40 40 H 1.09004 * 109.47151 * 59.99976 * 11 10 9 41 41 H 1.08996 * 109.47348 * 294.95307 * 12 11 10 42 42 H 1.09000 * 109.46809 * 54.95154 * 12 11 10 43 43 H 1.09004 * 110.71994 * 259.97644 * 15 13 12 44 44 H 1.09000 * 110.71952 * 23.24631 * 15 13 12 45 45 H 1.08994 * 111.00862 * 206.42782 * 16 15 13 46 46 H 1.08999 * 111.03719 * 82.58109 * 16 15 13 47 47 H 1.08995 * 110.36383 * 278.16727 * 17 16 15 48 48 H 1.09001 * 110.36431 * 155.84364 * 17 16 15 49 49 H 0.97000 * 119.99808 * 180.02562 * 22 21 19 50 50 H 1.09005 * 109.47235 * 270.15105 * 28 27 3 51 51 H 1.09006 * 109.46915 * 30.14829 * 28 27 3 52 52 H 1.08994 * 109.47469 * 150.14664 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3706 2.0837 -1.1154 5 6 2.7715 3.3132 -0.7462 6 6 2.6531 3.3642 0.7150 7 6 2.9756 4.5041 1.5899 8 8 2.8294 4.4074 2.7934 9 7 3.4379 5.6526 1.0573 10 6 3.7593 6.7864 1.9276 11 6 4.2604 7.9557 1.0777 12 6 4.5955 9.1401 1.9866 13 6 5.2143 10.2638 1.1528 14 1 6.0623 9.8804 0.5855 15 6 4.1570 10.8478 0.1923 16 6 4.4716 12.3670 0.2111 17 6 4.9055 12.5764 1.6835 18 7 5.6544 11.3557 2.0334 19 6 6.6022 11.2553 3.0166 20 1 7.2603 10.3995 3.0469 21 6 6.7173 12.2535 3.9743 22 7 5.9157 13.2968 3.9371 23 14 8.0109 12.1169 5.3151 24 1 8.7798 10.8593 5.1348 25 1 8.9342 13.2771 5.2322 26 1 7.3475 12.1060 6.6435 27 6 2.1891 2.1370 1.1014 28 6 1.9130 1.7051 2.5185 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.3330 1.7132 -2.1292 35 1 3.1120 4.1057 -1.3962 36 1 3.5586 5.7283 0.0978 37 1 2.8660 7.0901 2.4734 38 1 4.5350 6.4931 2.6349 39 1 5.1538 7.6518 0.5322 40 1 3.4850 8.2492 0.3701 41 1 3.6844 9.5010 2.4638 42 1 5.3045 8.8222 2.7510 43 1 4.2809 10.4407 -0.8113 44 1 3.1505 10.6578 0.5650 45 1 3.5825 12.9531 -0.0212 46 1 5.2850 12.6067 -0.4737 47 1 4.0308 12.6821 2.3253 48 1 5.5477 13.4530 1.7686 49 1 5.9964 13.9945 4.6061 50 1 0.8798 1.9396 2.7750 51 1 2.0750 0.6310 2.6090 52 1 2.5843 2.2322 3.1963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753034343.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:52 Heat of formation + Delta-G solvation = -6.464708 kcal Electronic energy + Delta-G solvation = -28076.615792 eV Core-core repulsion = 24268.859395 eV Total energy + Delta-G solvation = -3807.756397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.32474 -40.20559 -39.41640 -36.60545 -34.99534 -34.63201 -33.57694 -32.51270 -31.25282 -30.52215 -29.29925 -27.36151 -26.59848 -25.71872 -24.38321 -22.98983 -22.64689 -21.85059 -21.11775 -20.63021 -19.82521 -18.69173 -18.32270 -17.01201 -16.90788 -16.80598 -16.58223 -16.13879 -15.96372 -15.69542 -15.45248 -15.15424 -14.61822 -14.31177 -14.16691 -14.12041 -13.86558 -13.77182 -13.68800 -13.63662 -13.49963 -13.11175 -12.98772 -12.95536 -12.77140 -12.73429 -12.62832 -12.40210 -12.22226 -12.09810 -11.95402 -11.81061 -11.65854 -11.52910 -11.30218 -11.14384 -10.84156 -10.65018 -10.09229 -9.49743 -9.07291 -8.76113 -7.84728 -5.20114 0.76577 1.43884 1.45223 1.55099 1.55506 1.87510 2.46500 2.51647 2.60796 3.33898 3.71880 3.81795 3.83014 3.96205 4.02440 4.04306 4.12602 4.16000 4.20591 4.27984 4.35336 4.39717 4.43089 4.46195 4.60813 4.64879 4.67380 4.80602 4.84111 4.84666 4.87301 4.87967 4.99499 5.02513 5.06067 5.08988 5.15451 5.23310 5.25742 5.29542 5.36971 5.50741 5.52767 5.57088 5.69488 5.72255 5.81259 5.83842 6.14992 6.29055 6.40216 6.73930 7.14159 7.40153 7.83803 8.51092 9.27110 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.001933 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.063665 B =14484.169487 C =15460.521135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.088 3.912 3 N -0.437 5.437 4 C -0.008 4.008 5 C -0.181 4.181 6 C -0.271 4.271 7 C 0.579 3.421 8 O -0.598 6.598 9 N -0.713 5.713 10 C 0.128 3.872 11 C -0.106 4.106 12 C -0.112 4.112 13 C 0.152 3.848 14 H 0.036 0.964 15 C -0.111 4.111 16 C -0.137 4.137 17 C 0.175 3.825 18 N -0.619 5.619 19 C -0.228 4.228 20 H 0.075 0.925 21 C -0.068 4.068 22 N -0.950 5.950 23 Si 0.971 3.029 24 H -0.267 1.267 25 H -0.291 1.291 26 H -0.295 1.295 27 C 0.094 3.906 28 C -0.090 4.090 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.202 0.798 35 H 0.163 0.837 36 H 0.413 0.587 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.041 0.959 42 H 0.036 0.964 43 H 0.097 0.903 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.064 0.936 47 H -0.010 1.010 48 H 0.030 0.970 49 H 0.245 0.755 50 H 0.076 0.924 51 H 0.088 0.912 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.418 -28.799 -16.356 35.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.032 4.032 3 N -0.113 5.113 4 C -0.135 4.135 5 C -0.205 4.205 6 C -0.281 4.281 7 C 0.370 3.630 8 O -0.481 6.481 9 N -0.364 5.364 10 C 0.004 3.996 11 C -0.144 4.144 12 C -0.152 4.152 13 C 0.046 3.954 14 H 0.054 0.946 15 C -0.149 4.149 16 C -0.175 4.175 17 C 0.049 3.951 18 N -0.343 5.343 19 C -0.358 4.358 20 H 0.093 0.907 21 C -0.261 4.261 22 N -0.599 5.599 23 Si 0.800 3.200 24 H -0.191 1.191 25 H -0.218 1.218 26 H -0.222 1.222 27 C -0.025 4.025 28 C -0.147 4.147 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.218 0.782 35 H 0.180 0.820 36 H 0.250 0.750 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.116 0.884 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.009 0.991 48 H 0.048 0.952 49 H 0.055 0.945 50 H 0.094 0.906 51 H 0.106 0.894 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.545 -29.082 -15.402 34.876 hybrid contribution 0.785 0.786 1.128 1.583 sum -10.761 -28.296 -14.274 33.470 Atomic orbital electron populations 1.22144 0.93763 1.04149 1.02407 1.22228 0.95996 0.78678 1.06283 1.44021 1.49191 1.13002 1.05074 1.22254 1.06052 0.92670 0.92477 1.22278 1.07453 0.98780 0.91950 1.20193 1.18324 0.94783 0.94810 1.17867 0.75672 0.82632 0.86796 1.90701 1.56720 1.83695 1.16973 1.45670 1.66654 1.12605 1.11510 1.21209 0.99304 0.85831 0.93261 1.21614 1.02319 0.92513 0.97960 1.21823 0.99491 0.95520 0.98364 1.21222 0.94814 0.88421 0.90962 0.94592 1.22585 0.98035 0.94796 0.99467 1.22882 1.00904 0.97233 0.96510 1.21207 0.92983 0.89583 0.91291 1.44870 1.44070 1.06567 1.38838 1.19332 1.08269 1.05473 1.02734 0.90680 1.25686 1.01688 0.97911 1.00781 1.70160 1.41592 1.11225 1.36909 0.85116 0.78397 0.77547 0.78988 1.19106 1.21813 1.22200 1.20439 1.00757 0.90868 0.90408 1.20486 1.02952 1.02140 0.89111 0.88539 0.93271 0.92169 0.86325 0.88321 0.78161 0.81996 0.74982 0.93181 0.93607 0.90166 0.89238 0.94035 0.94549 0.88448 0.91162 0.90097 0.91695 0.99148 0.95200 0.94535 0.90572 0.89377 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.24 71.98 0.74 -0.12 16 2 C 0.09 0.48 6.46 86.38 0.56 1.04 16 3 N -0.44 -5.85 2.69 -509.91 -1.37 -7.22 16 4 C -0.01 -0.10 11.32 83.12 0.94 0.84 16 5 C -0.18 -3.01 10.56 23.62 0.25 -2.76 16 6 C -0.27 -6.48 6.29 -19.04 -0.12 -6.60 16 7 C 0.58 17.32 7.81 86.62 0.68 18.00 16 8 O -0.60 -22.43 14.82 -4.09 -0.06 -22.49 16 9 N -0.71 -17.93 5.55 -466.53 -2.59 -20.52 16 10 C 0.13 3.70 5.67 86.38 0.49 4.19 16 11 C -0.11 -2.76 5.10 30.60 0.16 -2.60 16 12 C -0.11 -4.10 4.72 30.60 0.14 -3.96 16 13 C 0.15 6.02 3.16 45.34 0.14 6.17 16 14 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 15 C -0.11 -3.53 5.71 31.78 0.18 -3.34 16 16 C -0.14 -4.99 7.09 31.99 0.23 -4.77 16 17 C 0.17 8.84 5.41 86.86 0.47 9.31 16 18 N -0.62 -32.18 3.13 -668.27 -2.09 -34.27 16 19 C -0.23 -13.11 9.71 84.03 0.82 -12.30 16 20 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 21 C -0.07 -3.99 5.47 84.86 0.46 -3.52 16 22 N -0.95 -59.06 10.58 21.65 0.23 -58.84 16 23 Si 0.97 47.63 29.55 68.60 2.03 49.66 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 26 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 27 C 0.09 1.92 6.89 41.78 0.29 2.20 16 28 C -0.09 -1.69 9.51 71.23 0.68 -1.01 16 29 H 0.10 0.10 8.14 -2.39 -0.02 0.09 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.12 0.08 8.11 -2.39 -0.02 0.06 16 33 H 0.10 0.40 7.04 -2.39 -0.02 0.38 16 34 H 0.20 0.89 8.06 -2.91 -0.02 0.86 16 35 H 0.16 1.92 7.70 -2.91 -0.02 1.90 16 36 H 0.41 7.62 7.60 -92.71 -0.70 6.91 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.09 1.94 7.64 -2.39 -0.02 1.92 16 41 H 0.04 1.64 8.02 -2.39 -0.02 1.62 16 42 H 0.04 1.52 7.84 -2.39 -0.02 1.50 16 43 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.07 2.13 7.76 -2.39 -0.02 2.12 16 45 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 47 H -0.01 -0.53 8.06 -2.39 -0.02 -0.55 16 48 H 0.03 1.71 6.93 -2.39 -0.02 1.69 16 49 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 50 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 51 H 0.09 1.08 7.02 -2.38 -0.02 1.06 16 52 H 0.07 1.82 6.47 -2.39 -0.02 1.80 16 Total: -1.00 -80.13 412.70 3.43 -76.70 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.18 Total: 16.22 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 7.10 Total: 0.76 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -5.82 Total: -120.85 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.06 Total: -22.49 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -80.13 3.43 -76.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753034343.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.240 kcal (2) G-P(sol) polarization free energy of solvation -80.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds