Wall clock time and date at job start Tue Mar 31 2020 17:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47222 * 2 1 4 4 C 1.36441 * 124.85101 * 264.97468 * 3 2 1 5 5 C 1.34485 * 108.85634 * 179.73495 * 4 3 2 6 6 C 1.46684 * 106.32995 * 0.43382 * 5 4 3 7 7 C 1.47267 * 126.94210 * 179.82991 * 6 5 4 8 8 O 1.21629 * 119.99943 * 141.23571 * 7 6 5 9 9 N 1.34780 * 119.99684 * 321.23820 * 7 6 5 10 10 C 1.46921 * 120.63292 * 354.62832 * 9 7 6 11 11 C 1.53198 * 108.77439 * 233.60928 * 10 9 7 12 12 C 1.53040 * 109.31449 * 305.36616 * 11 10 9 13 13 C 1.53041 * 109.53731 * 61.36237 * 12 11 10 14 14 H 1.09002 * 109.49354 * 58.62264 * 13 12 11 15 15 C 1.52996 * 109.49370 * 178.68513 * 13 12 11 16 16 H 1.09000 * 109.47307 * 304.99938 * 15 13 12 17 17 C 1.52996 * 109.47644 * 65.00314 * 15 13 12 18 18 N 1.46499 * 109.46881 * 185.00401 * 15 13 12 19 19 C 1.36940 * 120.00345 * 155.00302 * 18 15 13 20 20 H 1.08003 * 119.99703 * 359.97438 * 19 18 15 21 21 C 1.38813 * 120.00193 * 180.02562 * 19 18 15 22 22 N 1.31617 * 119.99943 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99971 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47080 * 89.99346 * 23 21 19 25 25 H 1.48503 * 109.47331 * 209.99538 * 23 21 19 26 26 H 1.48505 * 109.47331 * 329.99771 * 23 21 19 27 27 C 1.46932 * 120.62744 * 174.63150 * 9 7 6 28 28 C 1.34653 * 124.85017 * 85.00203 * 3 2 1 29 29 C 1.50707 * 125.80019 * 359.95699 * 28 3 2 30 30 H 1.08992 * 109.47013 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46527 * 300.00109 * 1 2 3 32 32 H 1.08998 * 109.46839 * 59.99646 * 1 2 3 33 33 H 1.09001 * 109.47013 * 239.99680 * 2 1 3 34 34 H 1.09005 * 109.47176 * 120.00291 * 2 1 3 35 35 H 1.08005 * 125.57399 * 0.02562 * 4 3 2 36 36 H 1.08005 * 126.83439 * 180.26523 * 5 4 3 37 37 H 1.08995 * 109.58482 * 113.82253 * 10 9 7 38 38 H 1.09000 * 109.58454 * 353.39419 * 10 9 7 39 39 H 1.09002 * 109.49808 * 185.41153 * 11 10 9 40 40 H 1.09003 * 109.49309 * 65.31969 * 11 10 9 41 41 H 1.08999 * 109.45490 * 301.34515 * 12 11 10 42 42 H 1.09001 * 109.45025 * 181.38058 * 12 11 10 43 43 H 1.08991 * 109.47542 * 179.97438 * 17 15 13 44 44 H 1.08999 * 109.46732 * 299.99897 * 17 15 13 45 45 H 1.09002 * 109.46570 * 59.99524 * 17 15 13 46 46 H 0.97004 * 120.00042 * 335.00173 * 18 15 13 47 47 H 0.97005 * 119.99783 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.58436 * 6.59837 * 27 9 7 49 49 H 1.09003 * 109.58190 * 246.17610 * 27 9 7 50 50 H 1.08998 * 109.47276 * 269.99613 * 29 28 3 51 51 H 1.08994 * 109.47089 * 30.00135 * 29 28 3 52 52 H 1.09003 * 109.46655 * 150.00152 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3708 2.0836 -1.1154 5 6 2.7656 3.3152 -0.7468 6 6 2.6537 3.3640 0.7150 7 6 2.9758 4.5040 1.5898 8 8 2.2750 4.7481 2.5535 9 7 4.0471 5.2768 1.3225 10 6 4.9694 4.9273 0.2335 11 6 6.3948 4.8742 0.7925 12 6 6.7158 6.1996 1.4870 13 6 5.7476 6.4144 2.6525 14 1 5.8329 5.5844 3.3540 15 6 6.0902 7.7236 3.3662 16 1 7.1374 7.7095 3.6684 17 6 5.8489 8.8998 2.4180 18 7 5.2419 7.8700 4.5516 19 6 5.6639 8.6360 5.6053 20 1 6.6224 9.1320 5.5626 21 6 4.8604 8.7743 6.7288 22 7 3.6926 8.1694 6.7810 23 14 5.4364 9.8187 8.1664 24 1 4.9816 11.2192 7.9743 25 1 4.8665 9.2817 9.4281 26 1 6.9193 9.7855 8.2395 27 6 4.3150 6.4850 2.1147 28 6 2.1841 2.1388 1.1008 29 6 1.9000 1.7096 2.5173 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.3338 1.7129 -2.1291 36 1 3.1012 4.1094 -1.3973 37 1 4.9122 5.6825 -0.5503 38 1 4.7004 3.9530 -0.1745 39 1 7.0994 4.7106 -0.0229 40 1 6.4735 4.0584 1.5111 41 1 6.6128 7.0174 0.7738 42 1 7.7382 6.1734 1.8642 43 1 6.0925 9.8325 2.9267 44 1 6.4800 8.7909 1.5361 45 1 4.8016 8.9139 2.1159 46 1 4.3812 7.4242 4.5902 47 1 3.1309 8.2663 7.5659 48 1 3.6141 6.5385 2.9477 49 1 4.2044 7.3673 1.4842 50 1 0.8666 1.9480 2.7688 51 1 2.0580 0.6351 2.6100 52 1 2.5701 2.2354 3.1975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753816632.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:55 Heat of formation + Delta-G solvation = 18.880010 kcal Electronic energy + Delta-G solvation = -29824.510826 eV Core-core repulsion = 26017.853458 eV Total energy + Delta-G solvation = -3806.657368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.55899 -39.61447 -37.48958 -35.27874 -34.32938 -32.75327 -31.77947 -31.63566 -30.07973 -29.25344 -27.71167 -26.63294 -25.18601 -24.46670 -23.69014 -22.98437 -21.84413 -20.78174 -19.93524 -18.64761 -18.17147 -17.35720 -16.94478 -16.05664 -15.75042 -15.30515 -14.79147 -14.74884 -14.68271 -14.31380 -13.84138 -13.68071 -13.62398 -13.54034 -13.19825 -13.05096 -12.90066 -12.73621 -12.54543 -12.45147 -12.39432 -12.29187 -12.12514 -11.74409 -11.67084 -11.60042 -11.38835 -10.93413 -10.86427 -10.77368 -10.47458 -10.29768 -10.14312 -10.07749 -9.76295 -9.48908 -9.38530 -8.79536 -8.61147 -8.28149 -8.07591 -6.82807 -5.62592 -2.91850 1.90107 2.37379 2.62035 3.36672 3.51181 3.55640 3.57865 3.63566 4.26525 4.54039 4.60092 4.68229 4.74568 4.79963 4.94661 5.02535 5.11205 5.15595 5.17683 5.20507 5.31386 5.41033 5.49761 5.54666 5.59460 5.62592 5.68358 5.74689 5.80730 5.86979 5.88951 5.93457 6.01975 6.04113 6.08040 6.12094 6.24680 6.28063 6.37971 6.51713 6.58190 6.70143 6.73563 6.80681 6.94621 7.02843 7.04782 7.14084 7.25271 7.81167 7.84413 8.55132 8.66013 9.65814 10.25431 10.59714 11.59529 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.002887 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.965996 B = 9696.295814 C =10994.000664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 N -0.443 5.443 4 C -0.019 4.019 5 C -0.168 4.168 6 C -0.223 4.223 7 C 0.586 3.414 8 O -0.537 6.537 9 N -0.605 5.605 10 C 0.104 3.896 11 C -0.134 4.134 12 C -0.113 4.113 13 C -0.103 4.103 14 H 0.073 0.927 15 C 0.180 3.820 16 H 0.047 0.953 17 C -0.169 4.169 18 N -0.725 5.725 19 C -0.237 4.237 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.929 5.929 23 Si 0.904 3.096 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.117 3.883 28 C 0.094 3.906 29 C -0.088 4.088 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.164 0.836 36 H 0.145 0.855 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.038 0.962 45 H 0.049 0.951 46 H 0.385 0.615 47 H 0.254 0.746 48 H 0.099 0.901 49 H 0.068 0.932 50 H 0.080 0.920 51 H 0.061 0.939 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.002 -18.237 -21.038 27.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.025 4.025 3 N -0.120 5.120 4 C -0.146 4.146 5 C -0.192 4.192 6 C -0.232 4.232 7 C 0.375 3.625 8 O -0.415 6.415 9 N -0.338 5.338 10 C -0.019 4.019 11 C -0.172 4.172 12 C -0.151 4.151 13 C -0.123 4.123 14 H 0.091 0.909 15 C 0.070 3.930 16 H 0.065 0.935 17 C -0.229 4.229 18 N -0.367 5.367 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.577 5.577 23 Si 0.735 3.265 24 H -0.219 1.219 25 H -0.219 1.219 26 H -0.209 1.209 27 C -0.004 4.004 28 C -0.021 4.021 29 C -0.145 4.145 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.181 0.819 36 H 0.163 0.837 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.220 0.780 47 H 0.064 0.936 48 H 0.117 0.883 49 H 0.086 0.914 50 H 0.098 0.902 51 H 0.080 0.920 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.414 -18.346 -20.400 27.472 hybrid contribution 0.050 0.531 0.628 0.823 sum -1.364 -17.815 -19.772 26.649 Atomic orbital electron populations 1.22175 0.94247 1.02969 1.03505 1.21859 0.95675 0.80599 1.04329 1.43656 1.50728 1.11838 1.05795 1.21625 1.08493 0.93306 0.91135 1.21992 1.07150 0.96959 0.93145 1.20157 1.14448 0.94956 0.93676 1.17474 0.80194 0.81243 0.83607 1.90828 1.50334 1.71185 1.29150 1.47954 1.25299 1.26388 1.34177 1.21908 0.89095 1.01719 0.89177 1.21923 0.96099 0.98808 1.00353 1.21604 0.99273 0.96686 0.97580 1.21760 0.94009 0.99976 0.96519 0.90899 1.20172 0.95049 0.90411 0.87390 0.93472 1.22571 1.00509 1.01046 0.98784 1.42509 1.20761 1.59147 1.14299 1.19220 1.01464 1.21985 0.94195 0.91320 1.24745 0.96844 1.01015 0.98444 1.69684 1.11065 1.47241 1.29735 0.86238 0.77657 0.79999 0.82574 1.21865 1.21893 1.20899 1.21803 0.97501 0.85085 0.96033 1.20191 1.01615 0.91003 0.89331 1.20430 1.03811 1.00658 0.89642 0.90737 0.91574 0.91799 0.89082 0.89274 0.81892 0.83739 0.92079 0.88820 0.91316 0.91794 0.91646 0.91893 0.92990 0.94356 0.93197 0.78008 0.93578 0.88314 0.91406 0.90183 0.92005 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 10.24 37.16 0.38 -0.54 16 2 C 0.10 0.55 6.45 -4.04 -0.03 0.52 16 3 N -0.44 -4.14 2.68 -112.52 -0.30 -4.44 16 4 C -0.02 -0.17 11.32 -16.83 -0.19 -0.36 16 5 C -0.17 -1.85 8.67 -37.50 -0.33 -2.18 16 6 C -0.22 -3.19 5.35 -103.35 -0.55 -3.74 16 7 C 0.59 10.41 7.33 -12.59 -0.09 10.32 16 8 O -0.54 -11.84 15.71 5.25 0.08 -11.76 16 9 N -0.61 -9.67 2.97 -174.09 -0.52 -10.18 16 10 C 0.10 1.24 5.53 -3.71 -0.02 1.22 16 11 C -0.13 -1.54 6.08 -26.61 -0.16 -1.70 16 12 C -0.11 -1.52 4.89 -26.69 -0.13 -1.65 16 13 C -0.10 -1.79 2.27 -90.50 -0.21 -2.00 16 14 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 15 C 0.18 3.68 2.67 -67.93 -0.18 3.50 16 16 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 17 C -0.17 -3.11 8.77 37.16 0.33 -2.79 16 18 N -0.73 -18.92 5.06 -53.43 -0.27 -19.19 16 19 C -0.24 -6.81 9.93 -15.06 -0.15 -6.96 16 20 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -29.41 13.06 55.49 0.72 -28.68 16 23 Si 0.90 23.17 29.55 -169.99 -5.02 18.15 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 26 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 27 C 0.12 2.13 5.18 -3.71 -0.02 2.11 16 28 C 0.09 1.17 6.88 -81.88 -0.56 0.61 16 29 C -0.09 -1.02 9.50 36.01 0.34 -0.68 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.33 8.11 -51.93 -0.42 -0.09 16 34 H 0.09 0.44 7.05 -51.93 -0.37 0.07 16 35 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.14 1.37 7.40 -52.48 -0.39 0.98 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.02 4.68 -51.93 -0.24 0.78 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.83 6.63 -51.93 -0.34 0.48 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.04 0.58 6.60 -51.93 -0.34 0.24 16 45 H 0.05 0.93 6.23 -51.93 -0.32 0.61 16 46 H 0.39 10.89 6.48 -40.82 -0.26 10.63 16 47 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 48 H 0.10 2.20 5.82 -51.93 -0.30 1.90 16 49 H 0.07 1.17 6.06 -51.93 -0.31 0.86 16 50 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.06 0.53 7.02 -51.93 -0.36 0.16 16 52 H 0.09 1.23 7.63 -51.93 -0.40 0.83 16 LS Contribution 400.32 15.07 6.03 6.03 Total: -1.00 -35.49 400.32 -9.63 -45.12 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -8.69 Total: 9.80 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.67 Total: -4.84 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.37 Total: -62.50 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.49 -9.63 -45.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753816632.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.997 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds