Wall clock time and date at job start Tue Mar 31 2020 17:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47222 * 2 1 4 4 C 1.36441 * 124.85101 * 264.97468 * 3 2 1 5 5 C 1.34485 * 108.85634 * 179.73495 * 4 3 2 6 6 C 1.46684 * 106.32995 * 0.43382 * 5 4 3 7 7 C 1.47267 * 126.94210 * 179.82991 * 6 5 4 8 8 O 1.21629 * 119.99943 * 141.23571 * 7 6 5 9 9 N 1.34780 * 119.99684 * 321.23820 * 7 6 5 10 10 C 1.46921 * 120.63292 * 354.62832 * 9 7 6 11 11 C 1.53198 * 108.77439 * 233.60928 * 10 9 7 12 12 C 1.53040 * 109.31449 * 305.36616 * 11 10 9 13 13 C 1.53041 * 109.53731 * 61.36237 * 12 11 10 14 14 H 1.09002 * 109.49354 * 58.62264 * 13 12 11 15 15 C 1.52996 * 109.49370 * 178.68513 * 13 12 11 16 16 H 1.09000 * 109.47307 * 304.99938 * 15 13 12 17 17 C 1.52996 * 109.47644 * 65.00314 * 15 13 12 18 18 N 1.46499 * 109.46881 * 185.00401 * 15 13 12 19 19 C 1.36940 * 120.00345 * 155.00302 * 18 15 13 20 20 H 1.08003 * 119.99703 * 359.97438 * 19 18 15 21 21 C 1.38813 * 120.00193 * 180.02562 * 19 18 15 22 22 N 1.31617 * 119.99943 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99971 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47080 * 89.99346 * 23 21 19 25 25 H 1.48503 * 109.47331 * 209.99538 * 23 21 19 26 26 H 1.48505 * 109.47331 * 329.99771 * 23 21 19 27 27 C 1.46932 * 120.62744 * 174.63150 * 9 7 6 28 28 C 1.34653 * 124.85017 * 85.00203 * 3 2 1 29 29 C 1.50707 * 125.80019 * 359.95699 * 28 3 2 30 30 H 1.08992 * 109.47013 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46527 * 300.00109 * 1 2 3 32 32 H 1.08998 * 109.46839 * 59.99646 * 1 2 3 33 33 H 1.09001 * 109.47013 * 239.99680 * 2 1 3 34 34 H 1.09005 * 109.47176 * 120.00291 * 2 1 3 35 35 H 1.08005 * 125.57399 * 0.02562 * 4 3 2 36 36 H 1.08005 * 126.83439 * 180.26523 * 5 4 3 37 37 H 1.08995 * 109.58482 * 113.82253 * 10 9 7 38 38 H 1.09000 * 109.58454 * 353.39419 * 10 9 7 39 39 H 1.09002 * 109.49808 * 185.41153 * 11 10 9 40 40 H 1.09003 * 109.49309 * 65.31969 * 11 10 9 41 41 H 1.08999 * 109.45490 * 301.34515 * 12 11 10 42 42 H 1.09001 * 109.45025 * 181.38058 * 12 11 10 43 43 H 1.08991 * 109.47542 * 179.97438 * 17 15 13 44 44 H 1.08999 * 109.46732 * 299.99897 * 17 15 13 45 45 H 1.09002 * 109.46570 * 59.99524 * 17 15 13 46 46 H 0.97004 * 120.00042 * 335.00173 * 18 15 13 47 47 H 0.97005 * 119.99783 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.58436 * 6.59837 * 27 9 7 49 49 H 1.09003 * 109.58190 * 246.17610 * 27 9 7 50 50 H 1.08998 * 109.47276 * 269.99613 * 29 28 3 51 51 H 1.08994 * 109.47089 * 30.00135 * 29 28 3 52 52 H 1.09003 * 109.46655 * 150.00152 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3708 2.0836 -1.1154 5 6 2.7656 3.3152 -0.7468 6 6 2.6537 3.3640 0.7150 7 6 2.9758 4.5040 1.5898 8 8 2.2750 4.7481 2.5535 9 7 4.0471 5.2768 1.3225 10 6 4.9694 4.9273 0.2335 11 6 6.3948 4.8742 0.7925 12 6 6.7158 6.1996 1.4870 13 6 5.7476 6.4144 2.6525 14 1 5.8329 5.5844 3.3540 15 6 6.0902 7.7236 3.3662 16 1 7.1374 7.7095 3.6684 17 6 5.8489 8.8998 2.4180 18 7 5.2419 7.8700 4.5516 19 6 5.6639 8.6360 5.6053 20 1 6.6224 9.1320 5.5626 21 6 4.8604 8.7743 6.7288 22 7 3.6926 8.1694 6.7810 23 14 5.4364 9.8187 8.1664 24 1 4.9816 11.2192 7.9743 25 1 4.8665 9.2817 9.4281 26 1 6.9193 9.7855 8.2395 27 6 4.3150 6.4850 2.1147 28 6 2.1841 2.1388 1.1008 29 6 1.9000 1.7096 2.5173 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.3338 1.7129 -2.1291 36 1 3.1012 4.1094 -1.3973 37 1 4.9122 5.6825 -0.5503 38 1 4.7004 3.9530 -0.1745 39 1 7.0994 4.7106 -0.0229 40 1 6.4735 4.0584 1.5111 41 1 6.6128 7.0174 0.7738 42 1 7.7382 6.1734 1.8642 43 1 6.0925 9.8325 2.9267 44 1 6.4800 8.7909 1.5361 45 1 4.8016 8.9139 2.1159 46 1 4.3812 7.4242 4.5902 47 1 3.1309 8.2663 7.5659 48 1 3.6141 6.5385 2.9477 49 1 4.2044 7.3673 1.4842 50 1 0.8666 1.9480 2.7688 51 1 2.0580 0.6351 2.6100 52 1 2.5701 2.2354 3.1975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753816632.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:54 Heat of formation + Delta-G solvation = -3.417699 kcal Electronic energy + Delta-G solvation = -29825.477727 eV Core-core repulsion = 26017.853458 eV Total energy + Delta-G solvation = -3807.624269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.40664 -40.88772 -38.95169 -36.88271 -35.07534 -34.47130 -33.14189 -32.59802 -31.56076 -30.35710 -29.24454 -27.63590 -26.33771 -26.18085 -24.75761 -24.27480 -22.86837 -22.00011 -20.93077 -20.05405 -19.29322 -19.09363 -18.14779 -17.20709 -16.85634 -16.69161 -16.28410 -15.94938 -15.60669 -15.45521 -15.39495 -15.27202 -14.83339 -14.49638 -14.30092 -14.09563 -13.96169 -13.90616 -13.81838 -13.65857 -13.60325 -13.32869 -13.02433 -12.92229 -12.82913 -12.76198 -12.62644 -12.47262 -12.26710 -12.09409 -12.03296 -11.87586 -11.77751 -11.68448 -11.35896 -11.17004 -10.93192 -10.79892 -9.59828 -9.36008 -9.04715 -8.99996 -7.91095 -5.20962 0.87317 1.44182 1.47555 1.55747 1.56755 1.85479 2.20807 2.44220 2.56576 3.41045 3.70326 3.79734 3.83740 3.90090 3.94056 4.00296 4.06652 4.14742 4.18421 4.24074 4.35793 4.40329 4.42659 4.44027 4.59628 4.60683 4.63942 4.67189 4.75021 4.82445 4.85257 4.87636 4.94316 4.97113 4.98441 5.09917 5.11631 5.13436 5.14940 5.22524 5.24791 5.27101 5.39622 5.47416 5.54875 5.64839 5.72801 5.83798 6.16626 6.29579 6.43559 6.61026 7.33826 7.34181 8.12974 8.34872 9.32532 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.002887 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.965996 B = 9696.295814 C =10994.000664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 N -0.435 5.435 4 C 0.002 3.998 5 C -0.181 4.181 6 C -0.258 4.258 7 C 0.575 3.425 8 O -0.602 6.602 9 N -0.604 5.604 10 C 0.100 3.900 11 C -0.127 4.127 12 C -0.107 4.107 13 C -0.090 4.090 14 H 0.038 0.962 15 C 0.172 3.828 16 H 0.047 0.953 17 C -0.157 4.157 18 N -0.742 5.742 19 C -0.235 4.235 20 H 0.079 0.921 21 C -0.084 4.084 22 N -0.974 5.974 23 Si 0.975 3.025 24 H -0.287 1.287 25 H -0.299 1.299 26 H -0.266 1.266 27 C 0.126 3.874 28 C 0.081 3.919 29 C -0.084 4.084 30 H 0.097 0.903 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.208 0.792 36 H 0.160 0.840 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.034 0.966 44 H 0.082 0.918 45 H 0.041 0.959 46 H 0.368 0.632 47 H 0.248 0.752 48 H 0.043 0.957 49 H 0.079 0.921 50 H 0.071 0.929 51 H 0.094 0.906 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 -19.764 -25.027 31.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.030 4.030 3 N -0.111 5.111 4 C -0.125 4.125 5 C -0.205 4.205 6 C -0.268 4.268 7 C 0.366 3.634 8 O -0.484 6.484 9 N -0.335 5.335 10 C -0.021 4.021 11 C -0.165 4.165 12 C -0.144 4.144 13 C -0.110 4.110 14 H 0.057 0.943 15 C 0.064 3.936 16 H 0.065 0.935 17 C -0.216 4.216 18 N -0.382 5.382 19 C -0.367 4.367 20 H 0.097 0.903 21 C -0.276 4.276 22 N -0.625 5.625 23 Si 0.804 3.196 24 H -0.214 1.214 25 H -0.225 1.225 26 H -0.191 1.191 27 C 0.003 3.997 28 C -0.036 4.036 29 C -0.141 4.141 30 H 0.116 0.884 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.115 0.885 35 H 0.224 0.776 36 H 0.178 0.822 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.100 0.900 45 H 0.060 0.940 46 H 0.200 0.800 47 H 0.057 0.943 48 H 0.061 0.939 49 H 0.097 0.903 50 H 0.090 0.910 51 H 0.113 0.887 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.715 -19.886 -24.474 31.543 hybrid contribution -0.586 0.915 1.775 2.081 sum 0.130 -18.971 -22.700 29.584 Atomic orbital electron populations 1.22158 0.94098 1.04091 1.02254 1.22223 0.95739 0.78639 1.06399 1.43933 1.49386 1.12915 1.04864 1.22283 1.05505 0.92249 0.92444 1.22170 1.08490 0.98628 0.91196 1.20087 1.17077 0.94405 0.95199 1.18203 0.79850 0.82041 0.83303 1.90781 1.52549 1.73002 1.32091 1.48067 1.25585 1.25236 1.34604 1.22253 0.88262 1.03368 0.88234 1.21919 0.96600 0.96918 1.01069 1.21594 0.98201 0.98662 0.95984 1.21581 0.94930 0.97027 0.97444 0.94298 1.20477 0.93908 0.92878 0.86341 0.93455 1.22391 1.00948 0.98748 0.99531 1.42799 1.20831 1.58731 1.15852 1.19675 1.01390 1.20975 0.94677 0.90311 1.25649 0.97187 1.03133 1.01631 1.69893 1.12688 1.49646 1.30313 0.85106 0.77910 0.78004 0.78555 1.21407 1.22546 1.19066 1.21491 0.96531 0.86762 0.94883 1.20194 1.01774 0.91318 0.90308 1.20330 1.02335 1.02218 0.89231 0.88442 0.93771 0.92097 0.85801 0.88481 0.77569 0.82201 0.89557 0.87302 0.87150 0.93395 0.89641 0.90800 0.94645 0.89957 0.93985 0.79972 0.94318 0.93850 0.90317 0.91024 0.88730 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 71.98 0.74 -0.66 16 2 C 0.09 0.72 6.45 86.38 0.56 1.27 16 3 N -0.44 -7.06 2.68 -509.90 -1.37 -8.43 16 4 C 0.00 0.03 11.32 83.12 0.94 0.97 16 5 C -0.18 -3.60 8.67 23.62 0.20 -3.39 16 6 C -0.26 -7.51 5.35 -19.04 -0.10 -7.61 16 7 C 0.57 22.00 7.33 86.62 0.63 22.63 16 8 O -0.60 -29.67 15.71 -4.12 -0.06 -29.74 16 9 N -0.60 -19.97 2.97 -822.94 -2.45 -22.41 16 10 C 0.10 2.17 5.53 86.37 0.48 2.65 16 11 C -0.13 -2.56 6.08 30.67 0.19 -2.38 16 12 C -0.11 -2.60 4.89 30.62 0.15 -2.45 16 13 C -0.09 -3.22 2.27 -10.72 -0.02 -3.25 16 14 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 15 C 0.17 7.17 2.67 44.99 0.12 7.29 16 16 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 17 C -0.16 -5.64 8.77 71.98 0.63 -5.01 16 18 N -0.74 -40.74 5.06 -322.95 -1.63 -42.38 16 19 C -0.24 -13.90 9.93 84.03 0.83 -13.06 16 20 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 21 C -0.08 -5.20 5.50 84.86 0.47 -4.73 16 22 N -0.97 -65.09 13.06 21.65 0.28 -64.81 16 23 Si 0.98 49.04 29.55 68.60 2.03 51.07 16 24 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 27 C 0.13 4.84 5.18 86.36 0.45 5.29 16 28 C 0.08 2.04 6.88 41.78 0.29 2.33 16 29 C -0.08 -2.09 9.50 71.24 0.68 -1.41 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.12 0.26 8.11 -2.39 -0.02 0.24 16 34 H 0.10 0.66 7.05 -2.38 -0.02 0.64 16 35 H 0.21 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.16 2.54 7.40 -2.91 -0.02 2.51 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 2.10 4.68 -2.39 -0.01 2.09 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 1.79 6.63 -2.39 -0.02 1.77 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.08 2.23 6.60 -2.39 -0.02 2.21 16 45 H 0.04 1.57 6.23 -2.39 -0.01 1.55 16 46 H 0.37 22.58 6.48 -92.71 -0.60 21.98 16 47 H 0.25 16.08 8.31 -92.70 -0.77 15.31 16 48 H 0.04 2.16 5.82 -2.39 -0.01 2.14 16 49 H 0.08 2.79 6.06 -2.39 -0.01 2.78 16 50 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.09 1.60 7.02 -2.39 -0.02 1.59 16 52 H 0.05 1.68 7.63 -2.39 -0.02 1.66 16 Total: -1.00 -86.42 400.32 4.34 -82.09 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: 0.31 Total: 36.14 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 7.23 Total: -1.53 kcal Atomic # 7 Polarization: -132.86 SS G_CDS: -5.17 Total: -138.03 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.06 Total: -29.74 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 2.03 Total: 51.07 kcal Total: -86.42 4.34 -82.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753816632.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.669 kcal (2) G-P(sol) polarization free energy of solvation -86.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds