Wall clock time and date at job start Tue Mar 31 2020 18:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47054 * 247.24557 * 3 2 1 5 5 C 1.34773 * 119.99810 * 272.93328 * 4 3 2 6 6 O 1.21286 * 119.99962 * 183.67134 * 5 4 3 7 7 C 1.50697 * 120.00201 * 3.66472 * 5 4 3 8 8 C 1.52994 * 115.55406 * 274.61513 * 7 5 4 9 9 N 1.46904 * 109.47370 * 307.10011 * 8 7 5 10 10 C 1.46894 * 111.00046 * 169.02738 * 9 8 7 11 11 C 1.46900 * 110.99590 * 292.97747 * 9 8 7 12 12 C 1.53008 * 117.49839 * 128.94351 * 7 5 4 13 13 C 1.53000 * 117.49805 * 60.28809 * 7 5 4 14 14 C 1.46500 * 120.00292 * 92.93781 * 4 3 2 15 15 C 1.53041 * 109.46092 * 60.02263 * 14 4 3 16 16 C 1.53196 * 109.31050 * 178.60559 * 15 14 4 17 17 N 1.46924 * 108.76456 * 54.65600 * 16 15 14 18 18 C 1.36939 * 120.62918 * 126.36252 * 17 16 15 19 19 H 1.07993 * 120.00078 * 321.05472 * 18 17 16 20 20 C 1.38819 * 119.99567 * 141.05240 * 18 17 16 21 21 N 1.31609 * 120.00564 * 355.64534 * 20 18 17 22 22 Si 1.86806 * 119.99338 * 175.64377 * 20 18 17 23 23 H 1.48502 * 109.47298 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46686 * 120.00094 * 22 20 18 25 25 H 1.48491 * 109.47150 * 239.99845 * 22 20 18 26 26 C 1.46920 * 118.74150 * 306.37928 * 17 16 15 27 27 C 1.53047 * 109.45668 * 299.97148 * 14 4 3 28 28 H 4.40641 * 5.51473 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.47360 * 127.24093 * 3 2 1 30 30 H 1.09000 * 109.47117 * 7.24585 * 3 2 1 31 31 H 1.09004 * 109.47255 * 67.09725 * 8 7 5 32 32 H 1.09002 * 109.47462 * 187.09597 * 8 7 5 33 33 H 1.08999 * 109.47685 * 64.92727 * 10 9 8 34 34 H 1.09002 * 109.47288 * 184.93364 * 10 9 8 35 35 H 1.09003 * 109.47152 * 304.92353 * 10 9 8 36 36 H 1.08998 * 109.47447 * 65.22037 * 11 9 8 37 37 H 1.08995 * 109.47028 * 185.22312 * 11 9 8 38 38 H 1.09004 * 109.47035 * 305.22429 * 11 9 8 39 39 H 1.08994 * 117.49566 * 0.02562 * 12 7 5 40 40 H 1.09001 * 117.49534 * 145.02355 * 12 7 5 41 41 H 1.09005 * 117.49903 * 214.98362 * 13 7 5 42 42 H 1.09005 * 117.49640 * 359.97438 * 13 7 5 43 43 H 1.08996 * 109.46398 * 179.97438 * 14 4 3 44 44 H 1.08998 * 109.49919 * 298.56741 * 15 14 4 45 45 H 1.09000 * 109.49775 * 58.66499 * 15 14 4 46 46 H 1.09006 * 109.59510 * 294.86721 * 16 15 14 47 47 H 1.08996 * 109.69930 * 174.50462 * 16 15 14 48 48 H 0.96994 * 120.00194 * 179.97438 * 21 20 18 49 49 H 1.08996 * 109.59243 * 293.82650 * 26 17 16 50 50 H 1.09003 * 109.70829 * 173.46726 * 26 17 16 51 51 H 1.09005 * 109.49698 * 301.33555 * 27 14 4 52 52 H 1.09001 * 109.49546 * 61.39949 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.5351 1.2737 5 6 3.3017 1.8635 1.4271 6 8 3.7685 2.3009 2.4576 7 6 2.9095 2.8055 0.3181 8 6 3.9704 3.0334 -0.7605 9 7 5.2334 3.4364 -0.1277 10 6 6.3382 3.4123 -1.0955 11 6 5.1101 4.7599 0.4976 12 6 2.0056 3.9857 0.6803 13 6 1.4438 2.8086 -0.1208 14 6 3.4399 -0.3744 2.3807 15 6 4.5329 -1.3545 1.9482 16 6 4.8746 -2.2812 3.1193 17 7 3.6398 -2.9238 3.5894 18 6 3.5586 -4.2868 3.6934 19 1 4.0166 -4.9139 2.9429 20 6 2.8876 -4.8624 4.7637 21 7 2.4037 -4.1021 5.7228 22 14 2.6715 -6.7162 4.8424 23 1 3.3026 -7.3393 3.6513 24 1 3.3169 -7.2379 6.0739 25 1 1.2236 -7.0452 4.8651 26 6 2.4937 -2.0763 3.9454 27 6 2.1789 -1.1517 2.7652 28 1 -1.0501 0.0001 -0.0002 29 1 3.0091 0.6227 -0.8181 30 1 3.0098 -1.0186 -0.1296 31 1 4.1229 2.1108 -1.3207 32 1 3.6366 3.8191 -1.4383 33 1 6.1631 4.1634 -1.8657 34 1 7.2753 3.6293 -0.5827 35 1 6.3963 2.4261 -1.5562 36 1 4.3979 4.7078 1.3211 37 1 6.0821 5.0744 0.8773 38 1 4.7585 5.4797 -0.2417 39 1 1.6950 4.0810 1.7208 40 1 2.1665 4.9243 0.1499 41 1 1.2354 2.9732 -1.1780 42 1 0.7634 2.1289 0.3922 43 1 3.7877 0.2014 3.2384 44 1 4.1769 -1.9481 1.1062 45 1 5.4230 -0.7993 1.6521 46 1 5.3152 -1.6996 3.9292 47 1 5.5810 -3.0435 2.7905 48 1 1.9346 -4.5043 6.4704 49 1 2.7400 -1.4781 4.8226 50 1 1.6272 -2.7015 4.1610 51 1 1.3932 -0.4521 3.0507 52 1 1.8449 -1.7467 1.9152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754640356.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:06 Heat of formation + Delta-G solvation = 85.989565 kcal Electronic energy + Delta-G solvation = -30690.668949 eV Core-core repulsion = 26886.921670 eV Total energy + Delta-G solvation = -3803.747279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.56056 -38.28471 -37.01821 -35.94993 -35.38575 -33.03338 -32.03160 -30.14495 -29.56536 -28.19097 -27.70870 -27.05249 -25.32405 -23.50456 -22.59499 -22.26034 -22.09647 -21.11528 -19.35755 -18.79880 -17.80023 -16.89503 -16.55772 -16.26609 -15.75537 -15.44649 -15.07480 -14.83393 -14.63372 -14.39984 -13.88928 -13.63878 -13.56302 -13.25597 -13.13475 -12.89256 -12.73428 -12.60946 -12.38630 -12.32847 -12.17320 -12.01089 -11.80506 -11.73312 -11.40718 -11.09142 -10.88193 -10.76234 -10.58503 -10.45250 -10.35380 -10.17497 -10.09673 -10.06564 -9.85458 -9.78263 -9.55740 -9.30298 -8.50751 -8.49638 -8.33144 -6.46690 -5.76881 -3.32434 2.57402 2.86386 2.88794 3.28689 3.37307 3.44867 3.46839 3.55762 3.84237 4.39161 4.49886 4.50074 4.57706 4.66808 4.84187 4.99518 5.08864 5.16058 5.25833 5.27931 5.40081 5.40932 5.44342 5.46002 5.49971 5.53216 5.59706 5.65419 5.67111 5.72911 5.77982 5.92689 5.94724 5.95341 6.00917 6.17010 6.32733 6.41742 6.58669 6.67793 6.71049 6.80854 6.86234 6.86727 7.00436 7.05071 7.40557 7.61128 7.65995 7.73845 7.83442 8.47887 8.55988 9.26936 9.85126 10.48977 11.31285 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.003205 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.385090 B = 8734.731150 C = 9340.994142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.188 4.188 3 C 0.218 3.782 4 N -0.599 5.599 5 C 0.567 3.433 6 O -0.525 6.525 7 C -0.148 4.148 8 C 0.101 3.899 9 N -0.540 5.540 10 C 0.026 3.974 11 C 0.028 3.972 12 C -0.150 4.150 13 C -0.166 4.166 14 C 0.148 3.852 15 C -0.138 4.138 16 C 0.149 3.851 17 N -0.591 5.591 18 C -0.258 4.258 19 H 0.061 0.939 20 C 0.012 3.988 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.179 3.821 27 C -0.142 4.142 28 H 0.215 0.785 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.022 0.978 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.019 0.981 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.020 0.980 47 H 0.057 0.943 48 H 0.254 0.746 49 H 0.020 0.980 50 H 0.081 0.919 51 H 0.046 0.954 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.060 16.229 -16.938 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.189 4.189 3 C 0.095 3.905 4 N -0.330 5.330 5 C 0.354 3.646 6 O -0.400 6.400 7 C -0.152 4.152 8 C -0.027 4.027 9 N -0.263 5.263 10 C -0.122 4.122 11 C -0.120 4.120 12 C -0.187 4.187 13 C -0.204 4.204 14 C 0.046 3.954 15 C -0.178 4.178 16 C 0.022 3.978 17 N -0.314 5.314 18 C -0.388 4.388 19 H 0.079 0.921 20 C -0.187 4.187 21 N -0.543 5.543 22 Si 0.731 3.269 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.216 1.216 26 C 0.053 3.947 27 C -0.182 4.182 28 H 0.232 0.768 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.114 0.886 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.038 0.962 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.038 0.962 50 H 0.099 0.901 51 H 0.065 0.935 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.281 16.065 -15.827 22.553 hybrid contribution -0.636 -0.389 -0.613 0.965 sum -0.355 15.675 -16.440 22.718 Atomic orbital electron populations 1.24846 0.95844 1.01440 0.99469 1.23512 0.94879 0.99571 1.00957 1.18378 0.83729 1.01538 0.86842 1.48157 1.64915 1.06042 1.13918 1.19175 0.76957 0.81694 0.86776 1.90664 1.43559 1.76427 1.29386 1.21374 0.92783 1.01754 0.99303 1.21568 0.88093 1.00409 0.92678 1.61829 1.03990 1.28631 1.31838 1.22385 0.94537 1.01094 0.94228 1.22423 1.02720 0.87752 0.99150 1.23038 1.01384 0.92561 1.01747 1.23476 0.94055 1.01638 1.01200 1.21196 0.96054 0.89711 0.88435 1.22379 0.97277 0.97570 1.00553 1.20887 0.90019 0.94041 0.92894 1.43949 1.07504 1.02540 1.77402 1.19125 1.34103 0.81733 1.03854 0.92133 1.25396 1.00636 0.97697 0.95001 1.69956 1.39928 1.33832 1.10586 0.86244 0.77435 0.85629 0.77585 1.20151 1.21529 1.21612 1.20680 0.92128 0.91112 0.90815 1.22560 0.95494 0.98473 1.01713 0.76849 0.88832 0.87735 0.90146 0.93900 0.95935 0.91164 0.91389 0.90169 0.91725 0.96203 0.88187 0.88419 0.88275 0.86972 0.88644 0.92337 0.92673 0.96237 0.92496 0.93590 0.96194 0.90062 0.93519 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.22 17.89 29.55 0.53 -1.70 16 2 C -0.19 -2.33 9.53 -37.12 -0.35 -2.68 16 3 C 0.22 2.68 4.90 -6.83 -0.03 2.65 16 4 N -0.60 -9.13 2.36 -169.37 -0.40 -9.53 16 5 C 0.57 8.89 6.44 -10.99 -0.07 8.82 16 6 O -0.53 -10.29 16.39 5.55 0.09 -10.20 16 7 C -0.15 -1.71 0.39 -155.66 -0.06 -1.77 16 8 C 0.10 0.99 4.74 -3.82 -0.02 0.97 16 9 N -0.54 -6.04 4.66 -251.26 -1.17 -7.21 16 10 C 0.03 0.22 9.57 60.06 0.57 0.80 16 11 C 0.03 0.29 9.11 60.06 0.55 0.84 16 12 C -0.15 -1.55 8.56 -26.69 -0.23 -1.77 16 13 C -0.17 -1.62 8.00 -26.69 -0.21 -1.84 16 14 C 0.15 2.70 2.48 -67.88 -0.17 2.53 16 15 C -0.14 -2.46 5.32 -26.61 -0.14 -2.61 16 16 C 0.15 3.20 6.52 -3.71 -0.02 3.17 16 17 N -0.59 -14.95 2.95 -172.32 -0.51 -15.45 16 18 C -0.26 -7.09 9.50 -15.06 -0.14 -7.24 16 19 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 20 C 0.01 0.35 5.15 -17.43 -0.09 0.26 16 21 N -0.90 -26.34 11.30 55.49 0.63 -25.71 16 22 Si 0.90 21.66 29.56 -169.99 -5.02 16.63 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.18 4.37 5.20 -3.71 -0.02 4.35 16 27 C -0.14 -2.83 4.80 -26.61 -0.13 -2.95 16 28 H 0.21 1.75 7.80 -54.08 -0.42 1.33 16 29 H 0.09 0.93 5.46 -51.93 -0.28 0.64 16 30 H 0.10 1.30 6.46 -51.93 -0.34 0.96 16 31 H 0.08 0.72 6.51 -51.93 -0.34 0.39 16 32 H 0.04 0.36 7.99 -51.93 -0.41 -0.05 16 33 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.55 8.02 -51.93 -0.42 0.14 16 36 H 0.08 0.99 6.64 -51.93 -0.34 0.64 16 37 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.02 0.17 8.06 -51.93 -0.42 -0.25 16 39 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.11 1.26 4.98 -51.93 -0.26 1.00 16 43 H 0.10 2.01 6.90 -51.93 -0.36 1.65 16 44 H 0.06 1.01 6.72 -51.93 -0.35 0.66 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.08 2.20 6.52 -51.93 -0.34 1.86 16 51 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 52 H 0.06 1.13 7.17 -51.93 -0.37 0.76 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -32.28 401.30 -9.21 -41.49 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.83 Total: 2.10 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -0.04 Total: 1.84 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -1.45 Total: -57.90 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.28 -9.21 -41.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754640356.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.482 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds