Wall clock time and date at job start Tue Mar 31 2020 18:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47054 * 247.24557 * 3 2 1 5 5 C 1.34773 * 119.99810 * 272.93328 * 4 3 2 6 6 O 1.21286 * 119.99962 * 183.67134 * 5 4 3 7 7 C 1.50697 * 120.00201 * 3.66472 * 5 4 3 8 8 C 1.52994 * 115.55406 * 274.61513 * 7 5 4 9 9 N 1.46904 * 109.47370 * 307.10011 * 8 7 5 10 10 C 1.46894 * 111.00046 * 169.02738 * 9 8 7 11 11 C 1.46900 * 110.99590 * 292.97747 * 9 8 7 12 12 C 1.53008 * 117.49839 * 128.94351 * 7 5 4 13 13 C 1.53000 * 117.49805 * 60.28809 * 7 5 4 14 14 C 1.46500 * 120.00292 * 92.93781 * 4 3 2 15 15 C 1.53041 * 109.46092 * 60.02263 * 14 4 3 16 16 C 1.53196 * 109.31050 * 178.60559 * 15 14 4 17 17 N 1.46924 * 108.76456 * 54.65600 * 16 15 14 18 18 C 1.36939 * 120.62918 * 126.36252 * 17 16 15 19 19 H 1.07993 * 120.00078 * 321.05472 * 18 17 16 20 20 C 1.38819 * 119.99567 * 141.05240 * 18 17 16 21 21 N 1.31609 * 120.00564 * 355.64534 * 20 18 17 22 22 Si 1.86806 * 119.99338 * 175.64377 * 20 18 17 23 23 H 1.48502 * 109.47298 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46686 * 120.00094 * 22 20 18 25 25 H 1.48491 * 109.47150 * 239.99845 * 22 20 18 26 26 C 1.46920 * 118.74150 * 306.37928 * 17 16 15 27 27 C 1.53047 * 109.45668 * 299.97148 * 14 4 3 28 28 H 4.40641 * 5.51473 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.47360 * 127.24093 * 3 2 1 30 30 H 1.09000 * 109.47117 * 7.24585 * 3 2 1 31 31 H 1.09004 * 109.47255 * 67.09725 * 8 7 5 32 32 H 1.09002 * 109.47462 * 187.09597 * 8 7 5 33 33 H 1.08999 * 109.47685 * 64.92727 * 10 9 8 34 34 H 1.09002 * 109.47288 * 184.93364 * 10 9 8 35 35 H 1.09003 * 109.47152 * 304.92353 * 10 9 8 36 36 H 1.08998 * 109.47447 * 65.22037 * 11 9 8 37 37 H 1.08995 * 109.47028 * 185.22312 * 11 9 8 38 38 H 1.09004 * 109.47035 * 305.22429 * 11 9 8 39 39 H 1.08994 * 117.49566 * 0.02562 * 12 7 5 40 40 H 1.09001 * 117.49534 * 145.02355 * 12 7 5 41 41 H 1.09005 * 117.49903 * 214.98362 * 13 7 5 42 42 H 1.09005 * 117.49640 * 359.97438 * 13 7 5 43 43 H 1.08996 * 109.46398 * 179.97438 * 14 4 3 44 44 H 1.08998 * 109.49919 * 298.56741 * 15 14 4 45 45 H 1.09000 * 109.49775 * 58.66499 * 15 14 4 46 46 H 1.09006 * 109.59510 * 294.86721 * 16 15 14 47 47 H 1.08996 * 109.69930 * 174.50462 * 16 15 14 48 48 H 0.96994 * 120.00194 * 179.97438 * 21 20 18 49 49 H 1.08996 * 109.59243 * 293.82650 * 26 17 16 50 50 H 1.09003 * 109.70829 * 173.46726 * 26 17 16 51 51 H 1.09005 * 109.49698 * 301.33555 * 27 14 4 52 52 H 1.09001 * 109.49546 * 61.39949 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.5351 1.2737 5 6 3.3017 1.8635 1.4271 6 8 3.7685 2.3009 2.4576 7 6 2.9095 2.8055 0.3181 8 6 3.9704 3.0334 -0.7605 9 7 5.2334 3.4364 -0.1277 10 6 6.3382 3.4123 -1.0955 11 6 5.1101 4.7599 0.4976 12 6 2.0056 3.9857 0.6803 13 6 1.4438 2.8086 -0.1208 14 6 3.4399 -0.3744 2.3807 15 6 4.5329 -1.3545 1.9482 16 6 4.8746 -2.2812 3.1193 17 7 3.6398 -2.9238 3.5894 18 6 3.5586 -4.2868 3.6934 19 1 4.0166 -4.9139 2.9429 20 6 2.8876 -4.8624 4.7637 21 7 2.4037 -4.1021 5.7228 22 14 2.6715 -6.7162 4.8424 23 1 3.3026 -7.3393 3.6513 24 1 3.3169 -7.2379 6.0739 25 1 1.2236 -7.0452 4.8651 26 6 2.4937 -2.0763 3.9454 27 6 2.1789 -1.1517 2.7652 28 1 -1.0501 0.0001 -0.0002 29 1 3.0091 0.6227 -0.8181 30 1 3.0098 -1.0186 -0.1296 31 1 4.1229 2.1108 -1.3207 32 1 3.6366 3.8191 -1.4383 33 1 6.1631 4.1634 -1.8657 34 1 7.2753 3.6293 -0.5827 35 1 6.3963 2.4261 -1.5562 36 1 4.3979 4.7078 1.3211 37 1 6.0821 5.0744 0.8773 38 1 4.7585 5.4797 -0.2417 39 1 1.6950 4.0810 1.7208 40 1 2.1665 4.9243 0.1499 41 1 1.2354 2.9732 -1.1780 42 1 0.7634 2.1289 0.3922 43 1 3.7877 0.2014 3.2384 44 1 4.1769 -1.9481 1.1062 45 1 5.4230 -0.7993 1.6521 46 1 5.3152 -1.6996 3.9292 47 1 5.5810 -3.0435 2.7905 48 1 1.9346 -4.5043 6.4704 49 1 2.7400 -1.4781 4.8226 50 1 1.6272 -2.7015 4.1610 51 1 1.3932 -0.4521 3.0507 52 1 1.8449 -1.7467 1.9152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754640356.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:05 Heat of formation + Delta-G solvation = 66.428331 kcal Electronic energy + Delta-G solvation = -30691.517187 eV Core-core repulsion = 26886.921670 eV Total energy + Delta-G solvation = -3804.595518 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.69011 -39.54586 -38.32220 -37.02459 -36.60110 -34.56176 -33.43561 -31.91000 -31.34889 -28.98483 -28.41714 -28.13176 -27.10946 -24.91025 -23.85957 -23.39478 -23.25215 -22.48836 -20.79987 -20.09480 -18.85832 -18.59149 -17.76849 -17.51618 -16.85561 -16.62896 -16.22943 -16.02143 -15.64056 -15.59181 -15.38120 -15.17497 -14.85324 -14.66286 -14.48479 -14.20375 -14.13479 -13.96626 -13.41503 -13.38113 -13.20202 -12.97546 -12.96277 -12.77344 -12.74775 -12.59352 -12.52997 -12.47049 -12.20055 -11.96855 -11.91896 -11.58218 -11.42082 -11.37602 -11.21126 -11.03628 -10.77430 -10.60182 -10.56888 -9.73213 -9.21789 -8.54770 -7.88272 -5.48596 1.46491 1.47769 1.52642 1.58943 1.71569 1.98244 2.34985 2.49625 2.64216 3.10037 3.29660 3.51216 3.59993 3.67654 3.72184 3.86392 3.90018 4.04803 4.10372 4.24595 4.30734 4.33564 4.41324 4.46632 4.49157 4.56569 4.59546 4.66445 4.70586 4.76785 4.77670 4.81665 4.86548 4.89098 4.97261 5.04944 5.05213 5.08361 5.12147 5.12888 5.16703 5.20979 5.30228 5.43554 5.61166 5.65700 5.66287 6.10013 6.16132 6.44527 6.47133 6.76584 7.16130 7.26753 7.80638 8.40551 9.18221 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.003205 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.385090 B = 8734.731150 C = 9340.994142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.219 4.219 3 C 0.216 3.784 4 N -0.597 5.597 5 C 0.562 3.438 6 O -0.575 6.575 7 C -0.154 4.154 8 C 0.104 3.896 9 N -0.569 5.569 10 C 0.028 3.972 11 C 0.033 3.967 12 C -0.150 4.150 13 C -0.146 4.146 14 C 0.158 3.842 15 C -0.120 4.120 16 C 0.145 3.855 17 N -0.607 5.607 18 C -0.268 4.268 19 H 0.067 0.933 20 C -0.043 4.043 21 N -0.936 5.936 22 Si 0.971 3.029 23 H -0.261 1.261 24 H -0.292 1.292 25 H -0.289 1.289 26 C 0.189 3.811 27 C -0.118 4.118 28 H 0.240 0.760 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.098 0.902 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.004 0.996 47 H 0.065 0.935 48 H 0.251 0.749 49 H -0.013 1.013 50 H 0.050 0.950 51 H 0.045 0.955 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 16.518 -20.697 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.221 4.221 3 C 0.095 3.905 4 N -0.327 5.327 5 C 0.351 3.649 6 O -0.453 6.453 7 C -0.157 4.157 8 C -0.024 4.024 9 N -0.293 5.293 10 C -0.120 4.120 11 C -0.115 4.115 12 C -0.188 4.188 13 C -0.183 4.183 14 C 0.054 3.946 15 C -0.159 4.159 16 C 0.019 3.981 17 N -0.331 5.331 18 C -0.398 4.398 19 H 0.085 0.915 20 C -0.239 4.239 21 N -0.580 5.580 22 Si 0.798 3.202 23 H -0.185 1.185 24 H -0.219 1.219 25 H -0.216 1.216 26 C 0.063 3.937 27 C -0.158 4.158 28 H 0.256 0.744 29 H 0.141 0.859 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.140 0.860 41 H 0.148 0.852 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.022 0.978 47 H 0.083 0.917 48 H 0.060 0.940 49 H 0.005 0.995 50 H 0.068 0.932 51 H 0.064 0.936 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.043 16.358 -19.646 25.565 hybrid contribution -0.539 -0.441 0.606 0.923 sum -0.581 15.917 -19.040 24.824 Atomic orbital electron populations 1.25555 0.96640 1.00120 0.97913 1.23621 0.95248 1.00852 1.02331 1.18598 0.84060 1.02043 0.85803 1.48086 1.64830 1.05720 1.14073 1.19958 0.75724 0.81980 0.87196 1.90641 1.45764 1.77226 1.31708 1.21305 0.94419 1.01327 0.98686 1.21625 0.86991 1.01739 0.92054 1.61793 1.05256 1.29011 1.33254 1.22380 0.93559 1.01962 0.94059 1.22314 1.02000 0.88292 0.98936 1.23084 1.00992 0.93668 1.01035 1.23515 0.92012 1.00251 1.02569 1.20754 0.95133 0.89725 0.88944 1.22157 0.97821 0.96830 0.99122 1.21006 0.88800 0.94589 0.93695 1.44177 1.08863 1.02342 1.77668 1.19487 1.33569 0.82879 1.03880 0.91505 1.26195 1.00762 1.02188 0.94746 1.70138 1.41006 1.35650 1.11254 0.85166 0.77129 0.80203 0.77702 1.18542 1.21887 1.21605 1.20396 0.90926 0.90789 0.91636 1.22220 0.96324 0.97586 0.99717 0.74396 0.85920 0.87664 0.89003 0.91479 0.94343 0.91642 0.90790 0.92608 0.91981 0.94206 0.90545 0.86030 0.85176 0.88423 0.92025 0.90792 0.90876 0.97832 0.91687 0.94035 0.99508 0.93163 0.93611 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.64 17.89 74.32 1.33 -2.31 16 2 C -0.22 -4.90 9.53 31.12 0.30 -4.60 16 3 C 0.22 4.79 4.90 84.57 0.41 5.21 16 4 N -0.60 -17.70 2.36 -808.16 -1.91 -19.61 16 5 C 0.56 17.44 6.44 87.66 0.56 18.00 16 6 O -0.58 -23.36 16.39 -3.05 -0.05 -23.41 16 7 C -0.15 -3.22 0.39 -52.93 -0.02 -3.24 16 8 C 0.10 1.70 4.74 86.30 0.41 2.11 16 9 N -0.57 -11.59 4.66 -948.85 -4.42 -16.01 16 10 C 0.03 0.42 9.57 127.69 1.22 1.64 16 11 C 0.03 0.64 9.11 127.69 1.16 1.81 16 12 C -0.15 -2.84 8.56 30.62 0.26 -2.58 16 13 C -0.15 -2.41 8.00 30.62 0.24 -2.16 16 14 C 0.16 5.85 2.48 45.02 0.11 5.96 16 15 C -0.12 -4.19 5.32 30.67 0.16 -4.03 16 16 C 0.15 6.32 6.52 86.36 0.56 6.88 16 17 N -0.61 -31.43 2.95 -699.10 -2.06 -33.49 16 18 C -0.27 -14.86 9.50 84.03 0.80 -14.06 16 19 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 20 C -0.04 -2.42 5.15 84.87 0.44 -1.98 16 21 N -0.94 -56.71 11.30 21.65 0.24 -56.47 16 22 Si 0.97 44.94 29.56 68.60 2.03 46.97 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 26 C 0.19 9.67 5.20 86.36 0.45 10.12 16 27 C -0.12 -4.80 4.80 30.68 0.15 -4.65 16 28 H 0.24 3.14 7.80 -4.41 -0.03 3.10 16 29 H 0.12 1.98 5.46 -2.39 -0.01 1.97 16 30 H 0.11 2.32 6.46 -2.39 -0.02 2.31 16 31 H 0.09 1.27 6.51 -2.39 -0.02 1.26 16 32 H 0.07 0.81 7.99 -2.39 -0.02 0.79 16 33 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.00 8.02 -2.39 -0.02 0.98 16 36 H 0.06 1.37 6.64 -2.39 -0.02 1.35 16 37 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 38 H 0.04 0.60 8.06 -2.39 -0.02 0.58 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.10 1.95 4.98 -2.38 -0.01 1.94 16 43 H 0.06 2.74 6.90 -2.39 -0.02 2.72 16 44 H 0.07 2.40 6.72 -2.39 -0.02 2.38 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 47 H 0.06 2.69 7.93 -2.39 -0.02 2.67 16 48 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 49 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 50 H 0.05 2.85 6.52 -2.39 -0.02 2.84 16 51 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 52 H 0.06 2.52 7.17 -2.39 -0.02 2.50 16 Total: -1.00 -73.54 401.30 3.27 -70.27 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.89 Total: 19.64 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 8.55 Total: 12.11 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -8.14 Total: -125.58 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -73.54 3.27 -70.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754640356.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.698 kcal (2) G-P(sol) polarization free energy of solvation -73.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds