Wall clock time and date at job start Tue Mar 31 2020 18:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47017 * 2 1 4 4 C 1.46503 * 120.00021 * 269.99445 * 3 2 1 5 5 C 1.53001 * 109.47395 * 270.00408 * 4 3 2 6 6 C 1.39041 * 120.00261 * 90.00213 * 3 2 1 7 7 C 1.39223 * 119.93453 * 180.02562 * 6 3 2 8 8 C 1.37608 * 120.07095 * 180.02562 * 7 6 3 9 9 C 1.39795 * 119.92984 * 0.25369 * 8 7 6 10 10 C 1.47522 * 120.06831 * 179.72818 * 9 8 7 11 11 O 1.21590 * 119.99980 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99841 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99772 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47147 * 325.00969 * 13 12 10 15 15 C 1.53002 * 109.46838 * 85.00708 * 13 12 10 16 16 C 1.53002 * 109.47238 * 205.00318 * 13 12 10 17 17 H 1.09000 * 109.46857 * 65.00714 * 16 13 12 18 18 C 1.52996 * 109.46982 * 305.00170 * 16 13 12 19 19 N 1.46504 * 109.46939 * 185.00187 * 16 13 12 20 20 C 1.36932 * 119.99884 * 204.99682 * 19 16 13 21 21 H 1.07999 * 120.00074 * 0.02562 * 20 19 16 22 22 C 1.38812 * 119.99915 * 180.02562 * 20 19 16 23 23 N 1.31611 * 120.00184 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99925 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47018 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47031 * 119.99934 * 24 22 20 27 27 H 1.48500 * 109.47141 * 240.00370 * 24 22 20 28 28 C 1.39803 * 119.86119 * 359.51083 * 9 8 7 29 29 C 1.37604 * 119.92747 * 0.46708 * 28 9 8 30 30 H 1.08998 * 109.47066 * 300.00172 * 1 2 3 31 31 H 1.09004 * 109.46743 * 60.00258 * 1 2 3 32 32 H 1.08999 * 109.47122 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47751 * 240.00125 * 2 1 3 34 34 H 1.08997 * 109.47578 * 119.99716 * 2 1 3 35 35 H 1.09005 * 109.47183 * 30.00382 * 4 3 2 36 36 H 1.08997 * 109.47115 * 149.99850 * 4 3 2 37 37 H 1.09003 * 109.46980 * 179.97438 * 5 4 3 38 38 H 1.08993 * 109.46778 * 299.99709 * 5 4 3 39 39 H 1.09001 * 109.46753 * 59.99819 * 5 4 3 40 40 H 1.07999 * 119.96314 * 0.03738 * 7 6 3 41 41 H 1.08002 * 120.03162 * 179.97438 * 8 7 6 42 42 H 0.96998 * 120.00131 * 0.02562 * 12 10 9 43 43 H 1.09001 * 109.47346 * 59.99520 * 15 13 12 44 44 H 1.08994 * 109.47315 * 180.02562 * 15 13 12 45 45 H 1.09007 * 109.47237 * 299.99547 * 15 13 12 46 46 H 1.09002 * 109.46693 * 179.97438 * 18 16 13 47 47 H 1.09000 * 109.47768 * 299.99985 * 18 16 13 48 48 H 1.09007 * 109.46990 * 60.00242 * 18 16 13 49 49 H 0.97003 * 119.99810 * 25.00338 * 19 16 13 50 50 H 0.96998 * 120.00620 * 179.97438 * 23 22 20 51 51 H 1.07999 * 120.03308 * 180.23399 * 28 9 8 52 52 H 1.08007 * 119.95904 * 179.76477 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8314 -1.7104 6 6 2.2501 2.0367 1.2041 7 6 2.7136 3.3495 1.2024 8 6 2.9444 4.0008 2.3925 9 6 2.7181 3.3410 3.6040 10 6 2.9703 4.0342 4.8815 11 8 3.3759 5.1804 4.8815 12 7 2.7510 3.3969 6.0487 13 6 3.0020 4.0852 7.3174 14 1 3.8611 4.7470 7.2079 15 6 1.7708 4.9072 7.7038 16 6 3.2893 3.0529 8.4095 17 1 4.2159 2.5276 8.1783 18 6 2.1370 2.0486 8.4778 19 7 3.4221 3.7322 9.7007 20 6 4.1558 3.1578 10.7042 21 1 4.6368 2.2043 10.5437 22 6 4.2813 3.8012 11.9278 23 7 3.6947 4.9630 12.1236 24 14 5.2827 3.0180 13.2965 25 1 5.8347 1.7220 12.8265 26 1 6.3973 3.9235 13.6746 27 1 4.4116 2.7856 14.4765 28 6 2.2479 2.0244 3.6023 29 6 2.0186 1.3788 2.4089 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.5818 1.6877 -2.0285 36 1 2.0955 3.1410 -1.1385 37 1 3.8891 2.3449 -2.6546 38 1 4.3883 2.2155 -0.9508 39 1 3.8745 0.7621 -1.8407 40 1 2.8920 3.8574 0.2662 41 1 3.3044 5.0190 2.3905 42 1 2.4278 2.4824 6.0487 43 1 0.9117 4.2454 7.8132 44 1 1.9576 5.4197 8.6475 45 1 1.5661 5.6428 6.9258 46 1 2.3419 1.3129 9.2555 47 1 1.2104 2.5739 8.7090 48 1 2.0382 1.5432 7.5170 49 1 2.9903 4.5888 9.8448 50 1 3.7820 5.4125 12.9788 51 1 2.0685 1.5133 4.5367 52 1 1.6589 0.3604 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755266372.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:09 Heat of formation + Delta-G solvation = 5.360570 kcal Electronic energy + Delta-G solvation = -28505.079088 eV Core-core repulsion = 24697.835473 eV Total energy + Delta-G solvation = -3807.243615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.36521 -39.28669 -37.16321 -36.43494 -33.87419 -32.98953 -32.02685 -31.19432 -30.76570 -29.34112 -28.17014 -28.07953 -24.56480 -24.45127 -24.10868 -22.97425 -22.11997 -21.25910 -19.91128 -19.20335 -18.24534 -17.43167 -16.98258 -16.48465 -15.57269 -15.28085 -14.88941 -14.82118 -14.50537 -14.38862 -14.33427 -14.02119 -13.88598 -13.67302 -13.40274 -13.33447 -13.06319 -12.77462 -12.62157 -12.60676 -12.32423 -12.24184 -12.16299 -11.89050 -11.60403 -11.56295 -11.45147 -11.23368 -10.92447 -10.89859 -10.81061 -10.41349 -10.19371 -10.10375 -9.91312 -9.73154 -9.52140 -9.15445 -8.91667 -8.68373 -7.58729 -6.96960 -5.75581 -3.04773 1.01030 1.29916 2.66115 3.06253 3.44179 3.47712 3.52022 3.53137 3.95511 4.36104 4.40430 4.61088 4.64079 4.70126 4.75760 4.89864 4.93038 4.96129 4.96543 5.09134 5.19670 5.24310 5.36714 5.39226 5.41835 5.43611 5.50088 5.54598 5.67921 5.70938 5.71166 5.77512 5.87350 5.90650 6.00486 6.13237 6.15578 6.23130 6.34910 6.38635 6.45772 6.56860 6.58032 6.70949 6.77193 6.89379 7.02613 7.12510 7.15840 7.71841 7.85616 8.42751 8.56108 9.54264 10.10352 10.45359 11.47130 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023120 B = 0.002029 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.773175 B =13793.400593 C =14199.345019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.116 3.884 3 N -0.622 5.622 4 C 0.116 3.884 5 C -0.173 4.173 6 C 0.239 3.761 7 C -0.210 4.210 8 C -0.010 4.010 9 C -0.191 4.191 10 C 0.559 3.441 11 O -0.548 6.548 12 N -0.718 5.718 13 C 0.137 3.863 14 H 0.088 0.912 15 C -0.159 4.159 16 C 0.167 3.833 17 H 0.051 0.949 18 C -0.168 4.168 19 N -0.720 5.720 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.036 4.036 29 C -0.208 4.208 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.395 0.605 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.031 0.969 49 H 0.386 0.614 50 H 0.255 0.745 51 H 0.124 0.876 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.743 -10.311 -30.164 32.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.007 4.007 3 N -0.332 5.332 4 C -0.007 4.007 5 C -0.232 4.232 6 C 0.136 3.864 7 C -0.232 4.232 8 C -0.030 4.030 9 C -0.197 4.197 10 C 0.347 3.653 11 O -0.427 6.427 12 N -0.370 5.370 13 C 0.032 3.968 14 H 0.106 0.894 15 C -0.217 4.217 16 C 0.057 3.943 17 H 0.069 0.931 18 C -0.228 4.228 19 N -0.363 5.363 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.055 4.055 29 C -0.230 4.230 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.144 0.856 41 H 0.152 0.848 42 H 0.232 0.768 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.050 0.950 49 H 0.222 0.778 50 H 0.065 0.935 51 H 0.142 0.858 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.367 -9.688 -30.193 32.342 hybrid contribution 0.159 -0.678 0.864 1.110 sum -6.208 -10.366 -29.329 31.721 Atomic orbital electron populations 1.22232 0.96166 1.02117 1.02667 1.21438 0.94133 0.82312 1.02846 1.46596 1.70320 1.13231 1.03014 1.21437 0.96435 0.97943 0.84905 1.22233 0.97204 1.02156 1.01608 1.17982 0.91387 0.91270 0.85771 1.20621 1.09961 0.94056 0.98551 1.21002 0.92347 0.99344 0.90310 1.19758 1.10588 0.95643 0.93662 1.18185 0.77347 0.86035 0.83719 1.90755 1.46535 1.17672 1.87704 1.46158 1.67706 1.17409 1.05748 1.21305 0.98700 0.94819 0.81971 0.89410 1.22138 0.97698 0.99865 1.01996 1.20366 0.96080 0.91533 0.86346 0.93072 1.22532 1.00830 1.00337 0.99113 1.42464 1.61443 1.24021 1.08368 1.19270 1.23577 1.02528 0.91570 0.91090 1.24746 1.01083 0.97096 0.98027 1.69664 1.48093 1.15943 1.24261 0.86115 0.79486 0.78260 0.82298 1.20586 1.21870 1.21929 1.21057 0.93694 0.93102 0.97672 1.20566 1.10722 1.00930 0.90775 0.92022 0.92570 0.91683 0.90834 0.90364 0.90839 0.90384 0.91702 0.91998 0.92554 0.85609 0.84841 0.76839 0.92621 0.90587 0.93080 0.92406 0.92767 0.95001 0.77761 0.93517 0.85782 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.24 37.16 0.38 -0.46 16 2 C 0.12 0.59 5.87 -4.04 -0.02 0.57 16 3 N -0.62 -4.22 2.59 -171.76 -0.44 -4.66 16 4 C 0.12 0.60 5.87 -4.04 -0.02 0.58 16 5 C -0.17 -0.87 10.24 37.16 0.38 -0.49 16 6 C 0.24 2.17 6.55 -83.86 -0.55 1.62 16 7 C -0.21 -2.05 9.18 -39.45 -0.36 -2.41 16 8 C -0.01 -0.13 9.58 -39.23 -0.38 -0.50 16 9 C -0.19 -2.50 5.88 -104.95 -0.62 -3.12 16 10 C 0.56 9.07 7.73 -12.48 -0.10 8.97 16 11 O -0.55 -10.88 16.00 5.29 0.08 -10.80 16 12 N -0.72 -10.89 4.94 -54.85 -0.27 -11.16 16 13 C 0.14 2.49 2.62 -67.93 -0.18 2.31 16 14 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 15 C -0.16 -2.83 9.00 37.16 0.33 -2.49 16 16 C 0.17 3.31 2.93 -67.93 -0.20 3.11 16 17 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 18 C -0.17 -2.87 9.01 37.16 0.33 -2.53 16 19 N -0.72 -17.91 5.03 -53.43 -0.27 -18.18 16 20 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 24 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 28 C -0.04 -0.38 9.53 -39.23 -0.37 -0.75 16 29 C -0.21 -1.91 9.18 -39.45 -0.36 -2.27 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 34 H 0.08 0.40 6.17 -51.93 -0.32 0.08 16 35 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 36 H 0.08 0.41 6.17 -51.93 -0.32 0.09 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.13 0.99 6.11 -52.49 -0.32 0.67 16 41 H 0.13 1.65 7.64 -52.49 -0.40 1.25 16 42 H 0.39 4.97 4.59 -40.82 -0.19 4.78 16 43 H 0.05 0.91 6.57 -51.93 -0.34 0.57 16 44 H 0.08 1.49 6.29 -51.93 -0.33 1.16 16 45 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.05 0.94 6.57 -51.93 -0.34 0.60 16 48 H 0.03 0.42 6.29 -51.92 -0.33 0.10 16 49 H 0.39 10.17 5.77 -40.82 -0.24 9.94 16 50 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.12 1.10 6.39 -52.49 -0.34 0.76 16 52 H 0.13 0.91 6.11 -52.48 -0.32 0.59 16 LS Contribution 409.05 15.07 6.16 6.16 Total: -1.00 -32.99 409.05 -9.37 -42.36 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -8.36 Total: 11.35 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.98 Total: -5.08 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.26 Total: -61.44 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.99 -9.37 -42.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755266372.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.723 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds