Wall clock time and date at job start Tue Mar 31 2020 18:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47017 * 2 1 4 4 C 1.46503 * 120.00021 * 269.99445 * 3 2 1 5 5 C 1.53001 * 109.47395 * 270.00408 * 4 3 2 6 6 C 1.39041 * 120.00261 * 90.00213 * 3 2 1 7 7 C 1.39223 * 119.93453 * 180.02562 * 6 3 2 8 8 C 1.37608 * 120.07095 * 180.02562 * 7 6 3 9 9 C 1.39795 * 119.92984 * 0.25369 * 8 7 6 10 10 C 1.47522 * 120.06831 * 179.72818 * 9 8 7 11 11 O 1.21590 * 119.99980 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99841 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99772 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47147 * 325.00969 * 13 12 10 15 15 C 1.53002 * 109.46838 * 85.00708 * 13 12 10 16 16 C 1.53002 * 109.47238 * 205.00318 * 13 12 10 17 17 H 1.09000 * 109.46857 * 65.00714 * 16 13 12 18 18 C 1.52996 * 109.46982 * 305.00170 * 16 13 12 19 19 N 1.46504 * 109.46939 * 185.00187 * 16 13 12 20 20 C 1.36932 * 119.99884 * 204.99682 * 19 16 13 21 21 H 1.07999 * 120.00074 * 0.02562 * 20 19 16 22 22 C 1.38812 * 119.99915 * 180.02562 * 20 19 16 23 23 N 1.31611 * 120.00184 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99925 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47018 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47031 * 119.99934 * 24 22 20 27 27 H 1.48500 * 109.47141 * 240.00370 * 24 22 20 28 28 C 1.39803 * 119.86119 * 359.51083 * 9 8 7 29 29 C 1.37604 * 119.92747 * 0.46708 * 28 9 8 30 30 H 1.08998 * 109.47066 * 300.00172 * 1 2 3 31 31 H 1.09004 * 109.46743 * 60.00258 * 1 2 3 32 32 H 1.08999 * 109.47122 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47751 * 240.00125 * 2 1 3 34 34 H 1.08997 * 109.47578 * 119.99716 * 2 1 3 35 35 H 1.09005 * 109.47183 * 30.00382 * 4 3 2 36 36 H 1.08997 * 109.47115 * 149.99850 * 4 3 2 37 37 H 1.09003 * 109.46980 * 179.97438 * 5 4 3 38 38 H 1.08993 * 109.46778 * 299.99709 * 5 4 3 39 39 H 1.09001 * 109.46753 * 59.99819 * 5 4 3 40 40 H 1.07999 * 119.96314 * 0.03738 * 7 6 3 41 41 H 1.08002 * 120.03162 * 179.97438 * 8 7 6 42 42 H 0.96998 * 120.00131 * 0.02562 * 12 10 9 43 43 H 1.09001 * 109.47346 * 59.99520 * 15 13 12 44 44 H 1.08994 * 109.47315 * 180.02562 * 15 13 12 45 45 H 1.09007 * 109.47237 * 299.99547 * 15 13 12 46 46 H 1.09002 * 109.46693 * 179.97438 * 18 16 13 47 47 H 1.09000 * 109.47768 * 299.99985 * 18 16 13 48 48 H 1.09007 * 109.46990 * 60.00242 * 18 16 13 49 49 H 0.97003 * 119.99810 * 25.00338 * 19 16 13 50 50 H 0.96998 * 120.00620 * 179.97438 * 23 22 20 51 51 H 1.07999 * 120.03308 * 180.23399 * 28 9 8 52 52 H 1.08007 * 119.95904 * 179.76477 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8314 -1.7104 6 6 2.2501 2.0367 1.2041 7 6 2.7136 3.3495 1.2024 8 6 2.9444 4.0008 2.3925 9 6 2.7181 3.3410 3.6040 10 6 2.9703 4.0342 4.8815 11 8 3.3759 5.1804 4.8815 12 7 2.7510 3.3969 6.0487 13 6 3.0020 4.0852 7.3174 14 1 3.8611 4.7470 7.2079 15 6 1.7708 4.9072 7.7038 16 6 3.2893 3.0529 8.4095 17 1 4.2159 2.5276 8.1783 18 6 2.1370 2.0486 8.4778 19 7 3.4221 3.7322 9.7007 20 6 4.1558 3.1578 10.7042 21 1 4.6368 2.2043 10.5437 22 6 4.2813 3.8012 11.9278 23 7 3.6947 4.9630 12.1236 24 14 5.2827 3.0180 13.2965 25 1 5.8347 1.7220 12.8265 26 1 6.3973 3.9235 13.6746 27 1 4.4116 2.7856 14.4765 28 6 2.2479 2.0244 3.6023 29 6 2.0186 1.3788 2.4089 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.5818 1.6877 -2.0285 36 1 2.0955 3.1410 -1.1385 37 1 3.8891 2.3449 -2.6546 38 1 4.3883 2.2155 -0.9508 39 1 3.8745 0.7621 -1.8407 40 1 2.8920 3.8574 0.2662 41 1 3.3044 5.0190 2.3905 42 1 2.4278 2.4824 6.0487 43 1 0.9117 4.2454 7.8132 44 1 1.9576 5.4197 8.6475 45 1 1.5661 5.6428 6.9258 46 1 2.3419 1.3129 9.2555 47 1 1.2104 2.5739 8.7090 48 1 2.0382 1.5432 7.5170 49 1 2.9903 4.5888 9.8448 50 1 3.7820 5.4125 12.9788 51 1 2.0685 1.5133 4.5367 52 1 1.6589 0.3604 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755266372.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:08 Heat of formation + Delta-G solvation = -14.240975 kcal Electronic energy + Delta-G solvation = -28505.929075 eV Core-core repulsion = 24697.835473 eV Total energy + Delta-G solvation = -3808.093601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.35169 -40.29496 -38.47208 -37.41523 -35.60388 -33.70683 -33.39764 -32.18098 -31.56953 -30.75173 -29.80398 -28.83567 -26.16787 -25.45108 -24.97206 -24.26628 -22.84077 -22.19805 -20.83471 -20.68153 -19.55181 -19.02515 -17.91154 -17.23035 -16.72605 -16.61596 -16.12934 -15.99610 -15.82537 -15.50500 -15.33765 -15.16093 -14.86451 -14.66153 -14.49362 -14.25526 -14.01389 -13.92122 -13.61766 -13.53120 -13.23664 -13.17415 -13.07653 -12.97706 -12.81992 -12.74024 -12.66794 -12.63358 -12.10885 -12.06898 -12.00439 -11.85036 -11.66275 -11.59777 -11.51056 -10.95913 -10.90540 -10.83453 -10.07442 -9.94869 -9.02387 -8.25912 -7.92581 -5.21494 0.11185 0.51752 1.48383 1.49502 1.59197 1.98673 2.12815 2.21066 2.59543 3.02151 3.41134 3.78589 3.82382 3.92115 3.96538 4.01563 4.08102 4.10809 4.21997 4.26535 4.34295 4.41201 4.48414 4.51555 4.54509 4.56375 4.61343 4.69372 4.72649 4.87988 4.88710 4.91823 4.97353 5.00161 5.01946 5.04594 5.13977 5.20513 5.26289 5.27615 5.32115 5.38929 5.41927 5.50905 5.54005 5.60944 5.64424 5.79813 6.29445 6.34031 6.50045 6.64719 7.32350 7.35868 8.10056 8.33680 9.31240 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023120 B = 0.002029 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.773175 B =13793.400593 C =14199.345019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.617 5.617 4 C 0.110 3.890 5 C -0.168 4.168 6 C 0.246 3.754 7 C -0.212 4.212 8 C -0.022 4.022 9 C -0.220 4.220 10 C 0.557 3.443 11 O -0.595 6.595 12 N -0.705 5.705 13 C 0.150 3.850 14 H 0.054 0.946 15 C -0.149 4.149 16 C 0.166 3.834 17 H 0.047 0.953 18 C -0.158 4.158 19 N -0.734 5.734 20 C -0.235 4.235 21 H 0.078 0.922 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.973 3.027 25 H -0.264 1.264 26 H -0.297 1.297 27 H -0.294 1.294 28 C -0.030 4.030 29 C -0.208 4.208 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.142 0.858 41 H 0.118 0.882 42 H 0.410 0.590 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.045 0.955 47 H 0.052 0.948 48 H 0.075 0.925 49 H 0.376 0.624 50 H 0.250 0.750 51 H 0.143 0.857 52 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.598 -13.612 -32.593 36.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.012 4.012 3 N -0.324 5.324 4 C -0.013 4.013 5 C -0.227 4.227 6 C 0.140 3.860 7 C -0.234 4.234 8 C -0.042 4.042 9 C -0.225 4.225 10 C 0.348 3.652 11 O -0.478 6.478 12 N -0.358 5.358 13 C 0.044 3.956 14 H 0.072 0.928 15 C -0.207 4.207 16 C 0.057 3.943 17 H 0.065 0.935 18 C -0.217 4.217 19 N -0.376 5.376 20 C -0.367 4.367 21 H 0.096 0.904 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.802 3.198 25 H -0.189 1.189 26 H -0.225 1.225 27 H -0.221 1.221 28 C -0.050 4.050 29 C -0.231 4.231 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.159 0.841 41 H 0.136 0.864 42 H 0.250 0.750 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.210 0.790 50 H 0.059 0.941 51 H 0.160 0.840 52 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.239 -13.080 -32.699 35.955 hybrid contribution 0.400 0.262 1.349 1.431 sum -6.839 -12.818 -31.350 34.553 Atomic orbital electron populations 1.22183 0.95767 1.02813 1.01926 1.21640 0.94360 0.81278 1.03950 1.46873 1.68916 1.13882 1.02745 1.21615 0.97037 0.98008 0.84592 1.22180 0.96507 1.02329 1.01673 1.18142 0.90008 0.90991 0.86885 1.20722 1.09870 0.94594 0.98255 1.20989 0.93063 0.99034 0.91117 1.19539 1.13983 0.96997 0.91975 1.18731 0.76169 0.85558 0.84759 1.90724 1.48814 1.19868 1.88346 1.45897 1.67605 1.17874 1.04441 1.20880 0.97635 0.94136 0.82947 0.92779 1.22025 0.98115 0.99943 1.00628 1.20529 0.97163 0.92041 0.84604 0.93541 1.22355 0.98975 0.99177 1.01222 1.42666 1.61202 1.24003 1.09773 1.19653 1.22586 1.02407 0.92064 0.90378 1.25564 1.02988 0.97896 1.00599 1.69825 1.50169 1.17565 1.24529 0.85074 0.77654 0.77818 0.79215 1.18870 1.22461 1.22099 1.21216 0.92711 0.91908 0.99142 1.20820 1.10178 1.01882 0.90174 0.93418 0.92622 0.90320 0.89084 0.89983 0.88904 0.90460 0.90410 0.93748 0.92351 0.84067 0.86361 0.75031 0.90774 0.92846 0.93299 0.93557 0.92899 0.90596 0.78981 0.94112 0.83968 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 71.98 0.74 -0.35 16 2 C 0.11 0.73 5.87 86.38 0.51 1.23 16 3 N -0.62 -6.51 2.59 -697.31 -1.81 -8.32 16 4 C 0.11 0.83 5.87 86.38 0.51 1.33 16 5 C -0.17 -1.27 10.24 71.98 0.74 -0.54 16 6 C 0.25 3.90 6.55 38.47 0.25 4.15 16 7 C -0.21 -3.92 9.18 22.36 0.21 -3.72 16 8 C -0.02 -0.54 9.58 22.50 0.22 -0.33 16 9 C -0.22 -5.69 5.88 -20.07 -0.12 -5.80 16 10 C 0.56 18.41 7.73 86.69 0.67 19.08 16 11 O -0.60 -24.91 16.00 -4.00 -0.06 -24.97 16 12 N -0.70 -21.02 4.94 -445.71 -2.20 -23.22 16 13 C 0.15 5.54 2.62 44.99 0.12 5.66 16 14 H 0.05 2.38 7.58 -2.39 -0.02 2.36 16 15 C -0.15 -5.41 9.00 71.98 0.65 -4.76 16 16 C 0.17 6.52 2.93 44.99 0.13 6.65 16 17 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 18 C -0.16 -5.07 9.01 71.98 0.65 -4.42 16 19 N -0.73 -37.17 5.03 -322.94 -1.63 -38.79 16 20 C -0.24 -13.06 9.93 84.03 0.83 -12.22 16 21 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 22 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 23 N -0.97 -60.19 13.06 21.65 0.28 -59.91 16 24 Si 0.97 46.64 29.55 68.60 2.03 48.66 16 25 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 C -0.03 -0.58 9.53 22.50 0.21 -0.36 16 29 C -0.21 -3.24 9.18 22.36 0.21 -3.04 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.09 0.34 8.07 -2.39 -0.02 0.32 16 34 H 0.08 0.51 6.17 -2.39 -0.01 0.50 16 35 H 0.09 0.39 8.07 -2.38 -0.02 0.37 16 36 H 0.08 0.62 6.17 -2.39 -0.01 0.61 16 37 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.14 2.06 6.11 -2.91 -0.02 2.04 16 41 H 0.12 3.15 7.64 -2.91 -0.02 3.13 16 42 H 0.41 9.42 4.59 -92.71 -0.43 9.00 16 43 H 0.07 2.39 6.57 -2.39 -0.02 2.37 16 44 H 0.05 2.19 6.29 -2.39 -0.02 2.17 16 45 H 0.05 1.77 8.14 -2.38 -0.02 1.76 16 46 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.05 1.73 6.57 -2.39 -0.02 1.71 16 48 H 0.08 1.75 6.29 -2.38 -0.01 1.74 16 49 H 0.38 20.50 5.77 -92.71 -0.54 19.96 16 50 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 51 H 0.14 2.05 6.39 -2.91 -0.02 2.04 16 52 H 0.15 1.59 6.11 -2.91 -0.02 1.57 16 Total: -1.00 -73.90 409.05 3.56 -70.34 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.03 Total: 37.72 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 6.98 Total: -1.51 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -5.35 Total: -130.24 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.06 Total: -24.97 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -73.90 3.56 -70.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755266372.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.094 kcal (2) G-P(sol) polarization free energy of solvation -73.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds