Wall clock time and date at job start Tue Mar 31 2020 18:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47276 * 2 1 4 4 C 1.46499 * 120.00136 * 269.99459 * 3 2 1 5 5 C 1.52996 * 109.47198 * 270.00278 * 4 3 2 6 6 C 1.39055 * 119.99886 * 89.99965 * 3 2 1 7 7 C 1.39215 * 119.93015 * 359.71929 * 6 3 2 8 8 C 1.37614 * 120.06406 * 179.72265 * 7 6 3 9 9 C 1.39789 * 119.93173 * 0.55665 * 8 7 6 10 10 C 1.47525 * 120.06960 * 179.69827 * 9 8 7 11 11 O 1.21597 * 119.99734 * 180.02562 * 10 9 8 12 12 N 1.34769 * 120.00037 * 0.02562 * 10 9 8 13 13 C 1.46496 * 120.00194 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47345 * 35.00136 * 13 12 10 15 15 C 1.52999 * 109.47553 * 275.00046 * 13 12 10 16 16 C 1.53001 * 109.47087 * 154.99506 * 13 12 10 17 17 H 1.08995 * 109.47871 * 294.99991 * 16 13 12 18 18 C 1.53007 * 109.46847 * 55.00640 * 16 13 12 19 19 N 1.46508 * 109.46825 * 174.99857 * 16 13 12 20 20 C 1.36937 * 119.99581 * 155.00353 * 19 16 13 21 21 H 1.08009 * 120.00257 * 0.02562 * 20 19 16 22 22 C 1.38814 * 119.99946 * 180.02562 * 20 19 16 23 23 N 1.31623 * 120.00016 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00055 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47064 * 60.00049 * 24 22 20 26 26 H 1.48494 * 109.47067 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46984 * 300.00277 * 24 22 20 28 28 C 1.39800 * 119.86242 * 359.72106 * 9 8 7 29 29 C 1.37601 * 119.92846 * 359.97438 * 28 9 8 30 30 H 1.09007 * 109.46853 * 59.99785 * 1 2 3 31 31 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47074 * 300.00425 * 1 2 3 33 33 H 1.08998 * 109.47074 * 239.99575 * 2 1 3 34 34 H 1.09008 * 109.46412 * 119.99581 * 2 1 3 35 35 H 1.08997 * 109.46865 * 30.00228 * 4 3 2 36 36 H 1.08998 * 109.47058 * 149.99741 * 4 3 2 37 37 H 1.08998 * 109.47221 * 179.97438 * 5 4 3 38 38 H 1.08997 * 109.47172 * 299.99762 * 5 4 3 39 39 H 1.08998 * 109.47554 * 59.99767 * 5 4 3 40 40 H 1.08000 * 119.96949 * 359.97438 * 7 6 3 41 41 H 1.08004 * 120.03174 * 180.25811 * 8 7 6 42 42 H 0.97005 * 119.99999 * 359.97438 * 12 10 9 43 43 H 1.08991 * 109.47271 * 179.97438 * 15 13 12 44 44 H 1.09010 * 109.46679 * 300.00083 * 15 13 12 45 45 H 1.09003 * 109.46809 * 59.99256 * 15 13 12 46 46 H 1.08997 * 109.47137 * 59.99523 * 18 16 13 47 47 H 1.08999 * 109.47051 * 179.97438 * 18 16 13 48 48 H 1.08995 * 109.46548 * 299.99210 * 18 16 13 49 49 H 0.96996 * 120.00407 * 335.00588 * 19 16 13 50 50 H 0.96991 * 119.99565 * 179.97438 * 23 22 20 51 51 H 1.07996 * 120.03374 * 179.97438 * 28 9 8 52 52 H 1.08009 * 119.96627 * 179.97438 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7103 6 6 2.2501 2.0367 1.2043 7 6 2.0120 1.3810 2.4090 8 6 2.2458 2.0251 3.6024 9 6 2.7119 3.3430 3.6041 10 6 2.9572 4.0387 4.8817 11 8 3.3621 5.1852 4.8816 12 7 2.7326 3.4034 6.0488 13 6 2.9767 4.0940 7.3175 14 1 2.7246 5.1491 7.2113 15 6 4.4528 3.9581 7.6965 16 6 2.1094 3.4703 8.4128 17 1 1.0575 3.6452 8.1872 18 6 2.3738 1.9646 8.4772 19 7 2.4399 4.0796 9.7036 20 6 1.5132 4.0928 10.7117 21 1 0.5388 3.6537 10.5554 22 6 1.8260 4.6706 11.9344 23 7 3.0132 5.2062 12.1248 24 14 0.5616 4.6893 13.3094 25 1 0.1875 3.2949 13.6568 26 1 1.1378 5.3596 14.5026 27 1 -0.6458 5.4288 12.8616 28 6 2.9445 4.0006 2.3926 29 6 2.7147 3.3490 1.2026 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 1.5819 1.6877 -2.0283 36 1 2.0957 3.1410 -1.1384 37 1 3.8893 2.3447 -2.6544 38 1 4.3884 2.2154 -0.9506 39 1 3.8746 0.7621 -1.8406 40 1 1.6473 0.3644 2.4071 41 1 2.0649 1.5145 4.5368 42 1 2.4092 2.4889 6.0489 43 1 4.6345 4.4722 8.6401 44 1 4.7049 2.9029 7.8027 45 1 5.0706 4.4024 6.9160 46 1 3.4258 1.7897 8.7029 47 1 1.7563 1.5203 9.2578 48 1 2.1280 1.5113 7.5169 49 1 3.3150 4.4737 9.8441 50 1 3.2316 5.6102 12.9791 51 1 3.3041 5.0190 2.3906 52 1 2.8938 3.8567 0.2662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755266375.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:20 Heat of formation + Delta-G solvation = 5.501833 kcal Electronic energy + Delta-G solvation = -28505.571256 eV Core-core repulsion = 24698.333767 eV Total energy + Delta-G solvation = -3807.237489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.36439 -39.28507 -37.16156 -36.43276 -33.87018 -32.98914 -32.02445 -31.19178 -30.76429 -29.33911 -28.16680 -28.07898 -24.56168 -24.45020 -24.10429 -22.96995 -22.12132 -21.25686 -19.91065 -19.20108 -18.24345 -17.42847 -16.98107 -16.48524 -15.55232 -15.27990 -14.95996 -14.79936 -14.48686 -14.33000 -14.29798 -14.10847 -13.87182 -13.67234 -13.40264 -13.33949 -13.05845 -12.76154 -12.62518 -12.60026 -12.32068 -12.23975 -12.16331 -11.88780 -11.60815 -11.55593 -11.45067 -11.23764 -10.90989 -10.89298 -10.79169 -10.40726 -10.23631 -10.10311 -9.93419 -9.72413 -9.51646 -9.15363 -8.90247 -8.68236 -7.58724 -6.96730 -5.74932 -3.04237 1.01110 1.29957 2.66188 3.06326 3.45014 3.48004 3.50861 3.53113 3.95579 4.36174 4.40551 4.61486 4.64172 4.70133 4.75934 4.89943 4.93001 4.96297 4.96608 5.09299 5.19693 5.24340 5.36863 5.39305 5.41904 5.43735 5.50239 5.54821 5.68200 5.71085 5.71414 5.77599 5.87429 5.90831 6.00571 6.13424 6.15624 6.23291 6.35069 6.38801 6.45991 6.56937 6.58199 6.71094 6.77405 6.89470 7.02792 7.12800 7.15885 7.71109 7.85715 8.43467 8.56215 9.54740 10.10785 10.45840 11.47626 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023463 B = 0.002049 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.057934 B =13661.448476 C =14352.053709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.116 3.884 3 N -0.622 5.622 4 C 0.116 3.884 5 C -0.173 4.173 6 C 0.239 3.761 7 C -0.208 4.208 8 C -0.036 4.036 9 C -0.191 4.191 10 C 0.559 3.441 11 O -0.548 6.548 12 N -0.718 5.718 13 C 0.137 3.863 14 H 0.088 0.912 15 C -0.159 4.159 16 C 0.168 3.832 17 H 0.051 0.949 18 C -0.168 4.168 19 N -0.719 5.719 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.010 4.010 29 C -0.210 4.210 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.395 0.605 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.031 0.969 49 H 0.387 0.613 50 H 0.256 0.744 51 H 0.134 0.866 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.327 -12.187 -30.115 32.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.007 4.007 3 N -0.332 5.332 4 C -0.007 4.007 5 C -0.232 4.232 6 C 0.136 3.864 7 C -0.230 4.230 8 C -0.055 4.055 9 C -0.196 4.196 10 C 0.347 3.653 11 O -0.427 6.427 12 N -0.370 5.370 13 C 0.032 3.968 14 H 0.106 0.894 15 C -0.217 4.217 16 C 0.057 3.943 17 H 0.069 0.931 18 C -0.228 4.228 19 N -0.363 5.363 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.030 4.030 29 C -0.232 4.232 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.232 0.768 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.050 0.950 49 H 0.222 0.778 50 H 0.066 0.934 51 H 0.152 0.848 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.216 -11.456 -30.133 32.260 hybrid contribution -0.566 -0.441 0.854 1.116 sum -1.782 -11.898 -29.279 31.654 Atomic orbital electron populations 1.22235 0.96153 1.02124 1.02697 1.21437 0.94149 0.82307 1.02817 1.46597 1.70324 1.13233 1.03010 1.21434 0.96423 0.97955 0.84913 1.22230 0.97210 1.02142 1.01598 1.17983 0.91389 0.91274 0.85770 1.20567 1.10605 1.01041 0.90773 1.21057 0.93686 0.93114 0.97674 1.19757 1.10641 0.95583 0.93663 1.18186 0.77395 0.85989 0.83721 1.90757 1.46539 1.17672 1.87706 1.46156 1.67695 1.17413 1.05747 1.21305 0.95796 0.97730 0.81966 0.89410 1.22138 0.95694 1.01850 1.02009 1.20367 0.96410 0.91212 0.86331 0.93079 1.22533 1.01982 0.99199 0.99105 1.42448 1.16549 1.69105 1.08169 1.19181 0.94904 1.31545 0.91469 0.91205 1.24747 0.96971 1.01162 0.98010 1.69649 1.20145 1.43675 1.24524 0.86256 0.80591 0.77471 0.81775 1.21319 1.21719 1.21279 1.21001 0.92364 0.99332 0.90310 1.20620 1.09960 0.94049 0.98552 0.92569 0.91682 0.91990 0.90845 0.90381 0.90834 0.90377 0.91705 0.92017 0.92564 0.85600 0.85782 0.76838 0.90584 0.92625 0.93083 0.92776 0.92407 0.95002 0.77757 0.93418 0.84841 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.24 37.16 0.38 -0.48 16 2 C 0.12 0.59 5.86 -4.04 -0.02 0.57 16 3 N -0.62 -4.22 2.59 -171.76 -0.44 -4.67 16 4 C 0.12 0.60 5.86 -4.04 -0.02 0.58 16 5 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16 6 C 0.24 2.17 6.55 -83.86 -0.55 1.63 16 7 C -0.21 -1.91 9.18 -39.45 -0.36 -2.27 16 8 C -0.04 -0.38 9.53 -39.23 -0.37 -0.75 16 9 C -0.19 -2.50 5.88 -104.95 -0.62 -3.12 16 10 C 0.56 9.07 7.73 -12.48 -0.10 8.98 16 11 O -0.55 -10.89 16.00 5.28 0.08 -10.81 16 12 N -0.72 -10.89 4.94 -54.85 -0.27 -11.17 16 13 C 0.14 2.49 2.62 -67.93 -0.18 2.31 16 14 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 15 C -0.16 -2.83 9.00 37.16 0.33 -2.49 16 16 C 0.17 3.32 2.93 -67.92 -0.20 3.12 16 17 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 18 C -0.17 -2.87 9.01 37.16 0.33 -2.54 16 19 N -0.72 -17.92 5.03 -53.42 -0.27 -18.19 16 20 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 21 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 24 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 C -0.01 -0.13 9.58 -39.23 -0.38 -0.50 16 29 C -0.21 -2.05 9.18 -39.45 -0.36 -2.41 16 30 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 34 H 0.08 0.40 6.18 -51.92 -0.32 0.07 16 35 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 36 H 0.08 0.41 6.17 -51.93 -0.32 0.09 16 37 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.13 0.92 6.12 -52.49 -0.32 0.59 16 41 H 0.12 1.10 6.39 -52.48 -0.34 0.76 16 42 H 0.39 4.98 4.59 -40.82 -0.19 4.79 16 43 H 0.08 1.49 6.29 -51.93 -0.33 1.16 16 44 H 0.05 0.91 6.57 -51.92 -0.34 0.57 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.05 0.94 6.56 -51.93 -0.34 0.60 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.03 0.42 6.29 -51.93 -0.33 0.10 16 49 H 0.39 10.18 5.77 -40.82 -0.24 9.94 16 50 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 51 H 0.13 1.65 7.64 -52.49 -0.40 1.25 16 52 H 0.13 0.99 6.11 -52.48 -0.32 0.67 16 LS Contribution 409.06 15.07 6.16 6.16 Total: -1.00 -32.95 409.06 -9.37 -42.31 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -8.36 Total: 11.46 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.98 Total: -5.10 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.26 Total: -61.47 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.95 -9.37 -42.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755266375.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.816 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds