Wall clock time and date at job start Tue Mar 31 2020 18:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47276 * 2 1 4 4 C 1.46499 * 120.00136 * 269.99459 * 3 2 1 5 5 C 1.52996 * 109.47198 * 270.00278 * 4 3 2 6 6 C 1.39055 * 119.99886 * 89.99965 * 3 2 1 7 7 C 1.39215 * 119.93015 * 359.71929 * 6 3 2 8 8 C 1.37614 * 120.06406 * 179.72265 * 7 6 3 9 9 C 1.39789 * 119.93173 * 0.55665 * 8 7 6 10 10 C 1.47525 * 120.06960 * 179.69827 * 9 8 7 11 11 O 1.21597 * 119.99734 * 180.02562 * 10 9 8 12 12 N 1.34769 * 120.00037 * 0.02562 * 10 9 8 13 13 C 1.46496 * 120.00194 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47345 * 35.00136 * 13 12 10 15 15 C 1.52999 * 109.47553 * 275.00046 * 13 12 10 16 16 C 1.53001 * 109.47087 * 154.99506 * 13 12 10 17 17 H 1.08995 * 109.47871 * 294.99991 * 16 13 12 18 18 C 1.53007 * 109.46847 * 55.00640 * 16 13 12 19 19 N 1.46508 * 109.46825 * 174.99857 * 16 13 12 20 20 C 1.36937 * 119.99581 * 155.00353 * 19 16 13 21 21 H 1.08009 * 120.00257 * 0.02562 * 20 19 16 22 22 C 1.38814 * 119.99946 * 180.02562 * 20 19 16 23 23 N 1.31623 * 120.00016 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00055 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47064 * 60.00049 * 24 22 20 26 26 H 1.48494 * 109.47067 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46984 * 300.00277 * 24 22 20 28 28 C 1.39800 * 119.86242 * 359.72106 * 9 8 7 29 29 C 1.37601 * 119.92846 * 359.97438 * 28 9 8 30 30 H 1.09007 * 109.46853 * 59.99785 * 1 2 3 31 31 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47074 * 300.00425 * 1 2 3 33 33 H 1.08998 * 109.47074 * 239.99575 * 2 1 3 34 34 H 1.09008 * 109.46412 * 119.99581 * 2 1 3 35 35 H 1.08997 * 109.46865 * 30.00228 * 4 3 2 36 36 H 1.08998 * 109.47058 * 149.99741 * 4 3 2 37 37 H 1.08998 * 109.47221 * 179.97438 * 5 4 3 38 38 H 1.08997 * 109.47172 * 299.99762 * 5 4 3 39 39 H 1.08998 * 109.47554 * 59.99767 * 5 4 3 40 40 H 1.08000 * 119.96949 * 359.97438 * 7 6 3 41 41 H 1.08004 * 120.03174 * 180.25811 * 8 7 6 42 42 H 0.97005 * 119.99999 * 359.97438 * 12 10 9 43 43 H 1.08991 * 109.47271 * 179.97438 * 15 13 12 44 44 H 1.09010 * 109.46679 * 300.00083 * 15 13 12 45 45 H 1.09003 * 109.46809 * 59.99256 * 15 13 12 46 46 H 1.08997 * 109.47137 * 59.99523 * 18 16 13 47 47 H 1.08999 * 109.47051 * 179.97438 * 18 16 13 48 48 H 1.08995 * 109.46548 * 299.99210 * 18 16 13 49 49 H 0.96996 * 120.00407 * 335.00588 * 19 16 13 50 50 H 0.96991 * 119.99565 * 179.97438 * 23 22 20 51 51 H 1.07996 * 120.03374 * 179.97438 * 28 9 8 52 52 H 1.08009 * 119.96627 * 179.97438 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7103 6 6 2.2501 2.0367 1.2043 7 6 2.0120 1.3810 2.4090 8 6 2.2458 2.0251 3.6024 9 6 2.7119 3.3430 3.6041 10 6 2.9572 4.0387 4.8817 11 8 3.3621 5.1852 4.8816 12 7 2.7326 3.4034 6.0488 13 6 2.9767 4.0940 7.3175 14 1 2.7246 5.1491 7.2113 15 6 4.4528 3.9581 7.6965 16 6 2.1094 3.4703 8.4128 17 1 1.0575 3.6452 8.1872 18 6 2.3738 1.9646 8.4772 19 7 2.4399 4.0796 9.7036 20 6 1.5132 4.0928 10.7117 21 1 0.5388 3.6537 10.5554 22 6 1.8260 4.6706 11.9344 23 7 3.0132 5.2062 12.1248 24 14 0.5616 4.6893 13.3094 25 1 0.1875 3.2949 13.6568 26 1 1.1378 5.3596 14.5026 27 1 -0.6458 5.4288 12.8616 28 6 2.9445 4.0006 2.3926 29 6 2.7147 3.3490 1.2026 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 1.5819 1.6877 -2.0283 36 1 2.0957 3.1410 -1.1384 37 1 3.8893 2.3447 -2.6544 38 1 4.3884 2.2154 -0.9506 39 1 3.8746 0.7621 -1.8406 40 1 1.6473 0.3644 2.4071 41 1 2.0649 1.5145 4.5368 42 1 2.4092 2.4889 6.0489 43 1 4.6345 4.4722 8.6401 44 1 4.7049 2.9029 7.8027 45 1 5.0706 4.4024 6.9160 46 1 3.4258 1.7897 8.7029 47 1 1.7563 1.5203 9.2578 48 1 2.1280 1.5113 7.5169 49 1 3.3150 4.4737 9.8441 50 1 3.2316 5.6102 12.9791 51 1 3.3041 5.0190 2.3906 52 1 2.8938 3.8567 0.2662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755266375.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:19 Heat of formation + Delta-G solvation = -14.055553 kcal Electronic energy + Delta-G solvation = -28506.419328 eV Core-core repulsion = 24698.333767 eV Total energy + Delta-G solvation = -3808.085561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.35176 -40.29461 -38.46999 -37.41514 -35.59974 -33.70512 -33.39777 -32.18018 -31.56905 -30.75002 -29.80260 -28.83612 -26.16310 -25.44903 -24.97005 -24.26448 -22.84301 -22.19679 -20.83509 -20.68074 -19.54827 -19.02279 -17.91112 -17.23524 -16.71416 -16.60120 -16.14420 -16.02179 -15.81651 -15.49718 -15.31161 -15.15420 -14.86773 -14.69220 -14.48589 -14.25578 -13.99177 -13.93378 -13.61608 -13.52001 -13.24168 -13.17249 -13.07758 -12.98021 -12.76144 -12.73745 -12.66824 -12.62085 -12.17374 -12.10980 -11.99180 -11.85055 -11.65549 -11.59995 -11.51423 -10.93375 -10.90358 -10.83432 -10.07454 -9.94880 -9.02069 -8.25979 -7.91924 -5.20974 0.11160 0.51705 1.48526 1.51844 1.57652 1.98626 2.12819 2.21113 2.60055 3.02114 3.41337 3.78572 3.82404 3.92162 3.96699 4.01685 4.08089 4.10828 4.21964 4.26560 4.34321 4.41184 4.48411 4.51590 4.54594 4.56305 4.61342 4.69346 4.72643 4.88031 4.88790 4.91868 4.97362 5.00080 5.01974 5.04612 5.13920 5.20504 5.26260 5.27617 5.32155 5.38912 5.41876 5.50689 5.53856 5.60897 5.64483 5.79791 6.29756 6.34064 6.50013 6.64673 7.32308 7.36227 8.10487 8.34202 9.31435 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023463 B = 0.002049 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.057934 B =13661.448476 C =14352.053709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.110 3.890 3 N -0.617 5.617 4 C 0.110 3.890 5 C -0.168 4.168 6 C 0.246 3.754 7 C -0.208 4.208 8 C -0.030 4.030 9 C -0.220 4.220 10 C 0.557 3.443 11 O -0.595 6.595 12 N -0.705 5.705 13 C 0.150 3.850 14 H 0.054 0.946 15 C -0.149 4.149 16 C 0.166 3.834 17 H 0.046 0.954 18 C -0.158 4.158 19 N -0.734 5.734 20 C -0.238 4.238 21 H 0.078 0.922 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.974 3.026 25 H -0.275 1.275 26 H -0.298 1.298 27 H -0.280 1.280 28 C -0.022 4.022 29 C -0.212 4.212 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.058 0.942 40 H 0.151 0.849 41 H 0.143 0.857 42 H 0.410 0.590 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.052 0.948 47 H 0.045 0.955 48 H 0.075 0.925 49 H 0.376 0.624 50 H 0.250 0.750 51 H 0.118 0.882 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.719 -15.286 -32.511 36.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.012 4.012 3 N -0.324 5.324 4 C -0.013 4.013 5 C -0.226 4.226 6 C 0.140 3.860 7 C -0.230 4.230 8 C -0.050 4.050 9 C -0.225 4.225 10 C 0.348 3.652 11 O -0.478 6.478 12 N -0.358 5.358 13 C 0.044 3.956 14 H 0.072 0.928 15 C -0.207 4.207 16 C 0.057 3.943 17 H 0.064 0.936 18 C -0.217 4.217 19 N -0.376 5.376 20 C -0.370 4.370 21 H 0.096 0.904 22 C -0.270 4.270 23 N -0.620 5.620 24 Si 0.803 3.197 25 H -0.201 1.201 26 H -0.224 1.224 27 H -0.207 1.207 28 C -0.042 4.042 29 C -0.234 4.234 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.168 0.832 41 H 0.160 0.840 42 H 0.250 0.750 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.094 0.906 49 H 0.210 0.790 50 H 0.059 0.941 51 H 0.136 0.864 52 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.650 -14.637 -32.605 35.838 hybrid contribution -0.173 0.440 1.328 1.410 sum -2.823 -14.197 -31.277 34.464 Atomic orbital electron populations 1.22188 0.95843 1.02808 1.01901 1.21639 0.94299 0.81282 1.03975 1.46874 1.68919 1.13887 1.02742 1.21614 0.97084 0.97986 0.84589 1.22175 0.96454 1.02343 1.01673 1.18143 0.90013 0.90992 0.86883 1.20821 1.10062 1.01990 0.90171 1.21216 0.92704 0.91920 0.99144 1.19538 1.14045 0.96930 0.91975 1.18733 0.76229 0.85499 0.84761 1.90726 1.48838 1.19849 1.88348 1.45895 1.67635 1.17839 1.04441 1.20878 0.95656 0.96122 0.82941 0.92790 1.22024 0.95396 1.02637 1.00642 1.20530 0.96288 0.92915 0.84603 0.93563 1.22355 1.01701 0.96466 1.01200 1.42649 1.15756 1.69656 1.09568 1.19584 0.95418 1.30011 0.91995 0.90430 1.25571 0.98916 1.01879 1.00613 1.69818 1.22125 1.45379 1.24719 0.85205 0.78229 0.77751 0.78521 1.20138 1.22432 1.20669 1.20988 0.93081 0.99021 0.91117 1.20722 1.09866 0.94587 0.98256 0.92654 0.90311 0.93465 0.89044 0.89942 0.88943 0.90503 0.90426 0.93699 0.92325 0.83195 0.83972 0.75030 0.92841 0.90775 0.93298 0.92905 0.93582 0.90594 0.78980 0.94102 0.86361 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.24 71.98 0.74 -0.39 16 2 C 0.11 0.73 5.86 86.38 0.51 1.24 16 3 N -0.62 -6.52 2.59 -697.32 -1.81 -8.33 16 4 C 0.11 0.83 5.86 86.38 0.51 1.33 16 5 C -0.17 -1.24 10.24 71.98 0.74 -0.50 16 6 C 0.25 3.90 6.55 38.47 0.25 4.15 16 7 C -0.21 -3.24 9.18 22.36 0.21 -3.04 16 8 C -0.03 -0.58 9.53 22.50 0.21 -0.36 16 9 C -0.22 -5.69 5.88 -20.08 -0.12 -5.81 16 10 C 0.56 18.43 7.73 86.69 0.67 19.10 16 11 O -0.60 -24.93 16.00 -4.02 -0.06 -25.00 16 12 N -0.70 -21.06 4.94 -445.72 -2.20 -23.26 16 13 C 0.15 5.55 2.62 44.99 0.12 5.67 16 14 H 0.05 2.38 7.58 -2.39 -0.02 2.36 16 15 C -0.15 -5.41 9.00 71.98 0.65 -4.76 16 16 C 0.17 6.53 2.93 44.99 0.13 6.66 16 17 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 18 C -0.16 -5.08 9.01 71.98 0.65 -4.43 16 19 N -0.73 -37.22 5.03 -322.91 -1.63 -38.84 16 20 C -0.24 -13.25 9.93 84.03 0.83 -12.41 16 21 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 22 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 23 N -0.97 -60.16 13.06 21.65 0.28 -59.88 16 24 Si 0.97 46.60 29.55 68.60 2.03 48.62 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 27 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 28 C -0.02 -0.54 9.58 22.50 0.22 -0.33 16 29 C -0.21 -3.92 9.18 22.35 0.21 -3.72 16 30 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.09 0.34 8.07 -2.39 -0.02 0.32 16 34 H 0.08 0.51 6.18 -2.38 -0.01 0.49 16 35 H 0.09 0.40 8.07 -2.39 -0.02 0.38 16 36 H 0.08 0.63 6.17 -2.39 -0.01 0.61 16 37 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.04 0.49 8.14 -2.39 -0.02 0.48 16 39 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.15 1.59 6.12 -2.91 -0.02 1.57 16 41 H 0.14 2.06 6.39 -2.91 -0.02 2.04 16 42 H 0.41 9.44 4.59 -92.70 -0.43 9.02 16 43 H 0.05 2.19 6.29 -2.39 -0.02 2.17 16 44 H 0.07 2.39 6.57 -2.38 -0.02 2.37 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.05 1.73 6.56 -2.39 -0.02 1.71 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.08 1.76 6.29 -2.39 -0.02 1.74 16 49 H 0.38 20.52 5.77 -92.71 -0.54 19.98 16 50 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 51 H 0.12 3.15 7.64 -2.91 -0.02 3.13 16 52 H 0.14 2.07 6.11 -2.91 -0.02 2.05 16 Total: -1.00 -73.80 409.06 3.56 -70.25 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: -0.03 Total: 38.06 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 6.98 Total: -1.63 kcal Atomic # 7 Polarization: -124.95 SS G_CDS: -5.35 Total: -130.30 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.06 Total: -25.00 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -73.80 3.56 -70.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755266375.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.190 kcal (2) G-P(sol) polarization free energy of solvation -73.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds