Wall clock time and date at job start Tue Mar 31 2020 18:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46757 * 2 1 4 4 C 1.36454 * 124.84578 * 264.69273 * 3 2 1 5 5 C 1.34488 * 108.85327 * 179.82395 * 4 3 2 6 6 C 1.46691 * 106.33018 * 0.42734 * 5 4 3 7 7 C 1.47268 * 126.94038 * 179.71867 * 6 5 4 8 8 O 1.21628 * 119.99783 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99994 * 0.02562 * 7 6 5 10 10 C 1.46502 * 119.99976 * 174.66596 * 9 7 6 11 11 C 1.52999 * 109.47262 * 303.92799 * 10 9 7 12 12 N 1.46500 * 109.47303 * 305.42233 * 11 10 9 13 13 C 1.36937 * 120.00022 * 175.03777 * 12 11 10 14 14 H 1.08008 * 119.99686 * 0.02562 * 13 12 11 15 15 C 1.38803 * 120.00019 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00140 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00061 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47151 * 89.99937 * 17 15 13 19 19 H 1.48500 * 109.47291 * 210.00039 * 17 15 13 20 20 H 1.48502 * 109.46894 * 330.00137 * 17 15 13 21 21 C 1.53005 * 109.47252 * 183.92963 * 10 9 7 22 22 C 1.53006 * 109.47085 * 300.00203 * 21 10 9 23 23 C 1.52997 * 109.46972 * 299.99920 * 22 21 10 24 24 C 1.53005 * 109.47150 * 60.00120 * 23 22 21 25 25 C 1.52994 * 109.46994 * 63.93283 * 10 9 7 26 26 C 1.34652 * 124.85311 * 85.00204 * 3 2 1 27 27 C 1.50700 * 125.80168 * 359.97438 * 26 3 2 28 28 H 1.09005 * 109.47457 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47597 * 300.00333 * 1 2 3 30 30 H 1.09005 * 109.47505 * 60.00359 * 1 2 3 31 31 H 1.08994 * 109.47024 * 119.99507 * 2 1 3 32 32 H 1.09000 * 109.46973 * 240.00065 * 2 1 3 33 33 H 1.07995 * 125.57183 * 359.97438 * 4 3 2 34 34 H 1.07998 * 126.83307 * 180.12857 * 5 4 3 35 35 H 0.97001 * 120.00479 * 354.67401 * 9 7 6 36 36 H 1.09003 * 109.46757 * 65.42102 * 11 10 9 37 37 H 1.08998 * 109.47211 * 185.41826 * 11 10 9 38 38 H 0.96998 * 119.99784 * 355.04066 * 12 11 10 39 39 H 0.97001 * 120.00156 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47062 * 60.00067 * 21 10 9 41 41 H 1.08991 * 109.47002 * 180.02562 * 21 10 9 42 42 H 1.08994 * 109.47103 * 179.97438 * 22 21 10 43 43 H 1.09003 * 109.46700 * 59.99652 * 22 21 10 44 44 H 1.08991 * 109.47354 * 300.00108 * 23 22 21 45 45 H 1.09000 * 109.47006 * 179.97438 * 23 22 21 46 46 H 1.08998 * 109.47062 * 179.97438 * 24 23 22 47 47 H 1.09005 * 109.47139 * 59.99736 * 24 23 22 48 48 H 1.08998 * 109.47658 * 179.97438 * 25 10 9 49 49 H 1.09008 * 109.47295 * 299.99860 * 25 10 9 50 50 H 1.08990 * 109.47471 * 89.99641 * 27 26 3 51 51 H 1.09001 * 109.46929 * 210.00069 * 27 26 3 52 52 H 1.09000 * 109.46950 * 329.99673 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3757 2.0818 -1.1151 5 6 2.7706 3.3135 -0.7465 6 6 2.6530 3.3642 0.7148 7 6 2.9752 4.5043 1.5896 8 8 2.8298 4.4074 2.7932 9 7 3.4313 5.6550 1.0564 10 6 3.6408 6.8260 1.9114 11 6 2.3399 7.1627 2.6429 12 7 1.2596 7.3277 1.6673 13 6 -0.0246 7.5335 2.0960 14 1 -0.2408 7.5746 3.1534 15 6 -1.0481 7.6904 1.1716 16 7 -0.7843 7.6418 -0.1170 17 14 -2.7998 7.9719 1.7564 18 1 -3.0445 9.4292 1.9030 19 1 -3.7496 7.4078 0.7640 20 1 -2.9977 7.3024 3.0670 21 6 4.0643 8.0174 1.0498 22 6 5.3653 7.6808 0.3181 23 6 6.4614 7.3759 1.3410 24 6 6.0379 6.1845 2.2026 25 6 4.7370 6.5212 2.9342 26 6 2.1839 2.1389 1.1008 27 6 1.9002 1.7097 2.5172 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.3442 1.7091 -2.1282 34 1 3.1115 4.1057 -1.3965 35 1 3.6208 5.7079 0.1065 36 1 2.0893 6.3538 3.3293 37 1 2.4676 8.0885 3.2038 38 1 1.4539 7.2911 0.7177 39 1 -1.4995 7.7518 -0.7629 40 1 3.2834 8.2346 0.3210 41 1 4.2206 8.8885 1.6859 42 1 5.6667 8.5293 -0.2960 43 1 5.2093 6.8094 -0.3180 44 1 6.6173 8.2471 1.9771 45 1 7.3881 7.1356 0.8198 46 1 6.8190 5.9670 2.9310 47 1 5.8820 5.3132 1.5664 48 1 4.8933 7.3926 3.5700 49 1 4.4353 5.6724 3.5481 50 1 2.7968 1.2646 2.9485 51 1 1.6052 2.5772 3.1075 52 1 1.0934 0.9768 2.5201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755353374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:06 Heat of formation + Delta-G solvation = 6.475808 kcal Electronic energy + Delta-G solvation = -30812.451125 eV Core-core repulsion = 27005.255870 eV Total energy + Delta-G solvation = -3807.195254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.18293 -39.83474 -37.20374 -34.47629 -34.04668 -32.93069 -31.32769 -31.12823 -30.50031 -29.48851 -28.70041 -26.07297 -25.11988 -23.85540 -22.84181 -22.26025 -21.88410 -20.51723 -19.98458 -18.68967 -18.39417 -17.20998 -17.00458 -15.90937 -15.13089 -15.07469 -14.93587 -14.66844 -14.31847 -14.14981 -13.71139 -13.55625 -13.37740 -13.12688 -13.09549 -12.86812 -12.76486 -12.65848 -12.49943 -12.19655 -12.09046 -11.94778 -11.85977 -11.71968 -11.49710 -11.45939 -11.21466 -11.10127 -10.81756 -10.75665 -10.68549 -10.35375 -10.06536 -9.92610 -9.70923 -9.49477 -8.95555 -8.60914 -8.38227 -8.18520 -7.82171 -6.68622 -5.60581 -2.85343 2.16934 2.70644 2.93042 3.52207 3.57091 3.59373 3.94871 4.26303 4.51192 4.73187 4.81354 4.88759 5.01137 5.02191 5.04679 5.09002 5.12350 5.38665 5.41234 5.45056 5.49237 5.52236 5.61528 5.74806 5.77878 5.80682 5.81882 5.84393 5.87775 5.93274 5.95762 6.02224 6.17502 6.24507 6.26182 6.28991 6.37963 6.45184 6.47606 6.53277 6.64100 6.68103 6.80114 6.86651 7.06651 7.14072 7.32039 7.41217 7.46862 7.86262 8.34611 8.59239 9.09891 9.70401 10.31265 10.67138 11.62718 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.007039 B = 0.005756 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3977.030891 B = 4863.456029 C = 7652.568655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.099 3.901 3 N -0.445 5.445 4 C -0.024 4.024 5 C -0.161 4.161 6 C -0.222 4.222 7 C 0.604 3.396 8 O -0.549 6.549 9 N -0.705 5.705 10 C 0.180 3.820 11 C 0.140 3.860 12 N -0.723 5.723 13 C -0.223 4.223 14 H 0.067 0.933 15 C -0.017 4.017 16 N -0.935 5.935 17 Si 0.902 3.098 18 H -0.292 1.292 19 H -0.294 1.294 20 H -0.284 1.284 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.113 4.113 25 C -0.127 4.127 26 C 0.100 3.900 27 C -0.091 4.091 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.161 0.839 34 H 0.141 0.859 35 H 0.393 0.607 36 H 0.049 0.951 37 H 0.015 0.985 38 H 0.382 0.618 39 H 0.251 0.749 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.084 0.916 50 H 0.070 0.930 51 H 0.104 0.896 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.008 -13.142 -1.896 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.022 4.022 3 N -0.122 5.122 4 C -0.150 4.150 5 C -0.186 4.186 6 C -0.231 4.231 7 C 0.393 3.607 8 O -0.429 6.429 9 N -0.355 5.355 10 C 0.094 3.906 11 C 0.012 3.988 12 N -0.367 5.367 13 C -0.355 4.355 14 H 0.085 0.915 15 C -0.212 4.212 16 N -0.585 5.585 17 Si 0.734 3.266 18 H -0.220 1.220 19 H -0.220 1.220 20 H -0.210 1.210 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.150 4.150 25 C -0.165 4.165 26 C -0.016 4.016 27 C -0.148 4.148 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.178 0.822 34 H 0.159 0.841 35 H 0.227 0.773 36 H 0.067 0.933 37 H 0.033 0.967 38 H 0.216 0.784 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.102 0.898 50 H 0.089 0.911 51 H 0.122 0.878 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.626 -13.505 -0.955 18.513 hybrid contribution -1.083 0.238 -0.837 1.389 sum 11.543 -13.267 -1.792 17.677 Atomic orbital electron populations 1.22199 0.94329 1.02731 1.03795 1.21804 0.95651 0.80799 1.03978 1.43641 1.50878 1.11757 1.05964 1.21552 1.08811 0.93589 0.91010 1.21972 1.06409 0.96641 0.93555 1.20233 1.14819 0.94714 0.93373 1.17073 0.75457 0.81442 0.86758 1.90624 1.54144 1.83130 1.14969 1.45617 1.67587 1.10911 1.11364 1.20467 0.95244 0.84409 0.90466 1.21099 0.86786 0.97925 0.93024 1.42211 1.03035 1.86944 1.04492 1.19224 0.84702 1.39550 0.92037 0.91550 1.24639 0.97589 1.03722 0.95290 1.69653 1.31240 1.58163 0.99463 0.86250 0.85448 0.77614 0.77335 1.21974 1.22041 1.20959 1.21780 0.97030 0.97286 0.99652 1.21549 0.95332 1.01015 0.97743 1.21538 0.97658 0.98529 0.97752 1.21447 0.96994 0.98016 0.98571 1.21897 0.93942 1.02671 0.98024 1.20218 1.01378 0.90841 0.89174 1.20533 1.01026 1.03306 0.89968 0.90933 0.91523 0.91634 0.89531 0.89282 0.82159 0.84085 0.77309 0.93302 0.96703 0.78388 0.93924 0.90337 0.90827 0.92176 0.92256 0.92252 0.92750 0.92813 0.92111 0.91864 0.89789 0.91140 0.87777 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.24 37.16 0.38 -1.16 16 2 C 0.10 0.87 6.21 -4.04 -0.03 0.85 16 3 N -0.44 -5.74 2.68 -112.53 -0.30 -6.04 16 4 C -0.02 -0.31 11.32 -16.82 -0.19 -0.50 16 5 C -0.16 -2.46 10.56 -37.50 -0.40 -2.85 16 6 C -0.22 -3.92 6.29 -103.35 -0.65 -4.57 16 7 C 0.60 11.69 7.22 -12.59 -0.09 11.60 16 8 O -0.55 -11.76 11.11 5.25 0.06 -11.70 16 9 N -0.70 -12.29 3.57 -48.72 -0.17 -12.46 16 10 C 0.18 3.15 0.32 -131.82 -0.04 3.11 16 11 C 0.14 3.12 4.79 -4.04 -0.02 3.10 16 12 N -0.72 -19.07 5.19 -59.91 -0.31 -19.38 16 13 C -0.22 -6.59 9.99 -15.06 -0.15 -6.74 16 14 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 15 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 16 N -0.94 -28.99 13.06 55.49 0.72 -28.27 16 17 Si 0.90 23.51 29.55 -169.99 -5.02 18.49 16 18 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 19 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 20 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 21 C -0.12 -1.88 4.67 -26.73 -0.12 -2.00 16 22 C -0.12 -1.49 5.75 -26.73 -0.15 -1.64 16 23 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 24 C -0.11 -1.47 5.77 -26.73 -0.15 -1.63 16 25 C -0.13 -1.97 4.58 -26.73 -0.12 -2.10 16 26 C 0.10 1.57 6.89 -81.89 -0.56 1.01 16 27 C -0.09 -1.28 9.31 36.01 0.34 -0.95 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.71 7.52 -51.93 -0.39 0.32 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.65 7.74 -51.93 -0.40 0.25 16 32 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 33 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 34 H 0.14 1.91 7.71 -52.49 -0.40 1.51 16 35 H 0.39 6.24 6.34 -40.82 -0.26 5.98 16 36 H 0.05 1.21 6.25 -51.93 -0.32 0.89 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.38 10.39 6.46 -40.82 -0.26 10.13 16 39 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.08 1.42 7.11 -51.93 -0.37 1.05 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.73 6.78 -51.93 -0.35 0.37 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.84 7.60 -51.93 -0.39 0.45 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.08 1.49 6.28 -51.92 -0.33 1.16 16 50 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.10 1.79 6.47 -51.93 -0.34 1.45 16 52 H 0.06 0.67 7.06 -51.93 -0.37 0.30 16 LS Contribution 398.85 15.07 6.01 6.01 Total: -1.00 -34.57 398.85 -10.05 -44.62 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -8.81 Total: 15.35 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -2.22 Total: -6.61 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: -0.06 Total: -66.15 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.06 Total: -11.70 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -5.02 Total: 18.49 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.57 -10.05 -44.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755353374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.095 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds