Wall clock time and date at job start Tue Mar 31 2020 18:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46757 * 2 1 4 4 C 1.36454 * 124.84578 * 264.69273 * 3 2 1 5 5 C 1.34488 * 108.85327 * 179.82395 * 4 3 2 6 6 C 1.46691 * 106.33018 * 0.42734 * 5 4 3 7 7 C 1.47268 * 126.94038 * 179.71867 * 6 5 4 8 8 O 1.21628 * 119.99783 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99994 * 0.02562 * 7 6 5 10 10 C 1.46502 * 119.99976 * 174.66596 * 9 7 6 11 11 C 1.52999 * 109.47262 * 303.92799 * 10 9 7 12 12 N 1.46500 * 109.47303 * 305.42233 * 11 10 9 13 13 C 1.36937 * 120.00022 * 175.03777 * 12 11 10 14 14 H 1.08008 * 119.99686 * 0.02562 * 13 12 11 15 15 C 1.38803 * 120.00019 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00140 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00061 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47151 * 89.99937 * 17 15 13 19 19 H 1.48500 * 109.47291 * 210.00039 * 17 15 13 20 20 H 1.48502 * 109.46894 * 330.00137 * 17 15 13 21 21 C 1.53005 * 109.47252 * 183.92963 * 10 9 7 22 22 C 1.53006 * 109.47085 * 300.00203 * 21 10 9 23 23 C 1.52997 * 109.46972 * 299.99920 * 22 21 10 24 24 C 1.53005 * 109.47150 * 60.00120 * 23 22 21 25 25 C 1.52994 * 109.46994 * 63.93283 * 10 9 7 26 26 C 1.34652 * 124.85311 * 85.00204 * 3 2 1 27 27 C 1.50700 * 125.80168 * 359.97438 * 26 3 2 28 28 H 1.09005 * 109.47457 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47597 * 300.00333 * 1 2 3 30 30 H 1.09005 * 109.47505 * 60.00359 * 1 2 3 31 31 H 1.08994 * 109.47024 * 119.99507 * 2 1 3 32 32 H 1.09000 * 109.46973 * 240.00065 * 2 1 3 33 33 H 1.07995 * 125.57183 * 359.97438 * 4 3 2 34 34 H 1.07998 * 126.83307 * 180.12857 * 5 4 3 35 35 H 0.97001 * 120.00479 * 354.67401 * 9 7 6 36 36 H 1.09003 * 109.46757 * 65.42102 * 11 10 9 37 37 H 1.08998 * 109.47211 * 185.41826 * 11 10 9 38 38 H 0.96998 * 119.99784 * 355.04066 * 12 11 10 39 39 H 0.97001 * 120.00156 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47062 * 60.00067 * 21 10 9 41 41 H 1.08991 * 109.47002 * 180.02562 * 21 10 9 42 42 H 1.08994 * 109.47103 * 179.97438 * 22 21 10 43 43 H 1.09003 * 109.46700 * 59.99652 * 22 21 10 44 44 H 1.08991 * 109.47354 * 300.00108 * 23 22 21 45 45 H 1.09000 * 109.47006 * 179.97438 * 23 22 21 46 46 H 1.08998 * 109.47062 * 179.97438 * 24 23 22 47 47 H 1.09005 * 109.47139 * 59.99736 * 24 23 22 48 48 H 1.08998 * 109.47658 * 179.97438 * 25 10 9 49 49 H 1.09008 * 109.47295 * 299.99860 * 25 10 9 50 50 H 1.08990 * 109.47471 * 89.99641 * 27 26 3 51 51 H 1.09001 * 109.46929 * 210.00069 * 27 26 3 52 52 H 1.09000 * 109.46950 * 329.99673 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3757 2.0818 -1.1151 5 6 2.7706 3.3135 -0.7465 6 6 2.6530 3.3642 0.7148 7 6 2.9752 4.5043 1.5896 8 8 2.8298 4.4074 2.7932 9 7 3.4313 5.6550 1.0564 10 6 3.6408 6.8260 1.9114 11 6 2.3399 7.1627 2.6429 12 7 1.2596 7.3277 1.6673 13 6 -0.0246 7.5335 2.0960 14 1 -0.2408 7.5746 3.1534 15 6 -1.0481 7.6904 1.1716 16 7 -0.7843 7.6418 -0.1170 17 14 -2.7998 7.9719 1.7564 18 1 -3.0445 9.4292 1.9030 19 1 -3.7496 7.4078 0.7640 20 1 -2.9977 7.3024 3.0670 21 6 4.0643 8.0174 1.0498 22 6 5.3653 7.6808 0.3181 23 6 6.4614 7.3759 1.3410 24 6 6.0379 6.1845 2.2026 25 6 4.7370 6.5212 2.9342 26 6 2.1839 2.1389 1.1008 27 6 1.9002 1.7097 2.5172 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.3442 1.7091 -2.1282 34 1 3.1115 4.1057 -1.3965 35 1 3.6208 5.7079 0.1065 36 1 2.0893 6.3538 3.3293 37 1 2.4676 8.0885 3.2038 38 1 1.4539 7.2911 0.7177 39 1 -1.4995 7.7518 -0.7629 40 1 3.2834 8.2346 0.3210 41 1 4.2206 8.8885 1.6859 42 1 5.6667 8.5293 -0.2960 43 1 5.2093 6.8094 -0.3180 44 1 6.6173 8.2471 1.9771 45 1 7.3881 7.1356 0.8198 46 1 6.8190 5.9670 2.9310 47 1 5.8820 5.3132 1.5664 48 1 4.8933 7.3926 3.5700 49 1 4.4353 5.6724 3.5481 50 1 2.7968 1.2646 2.9485 51 1 1.6052 2.5772 3.1075 52 1 1.0934 0.9768 2.5201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755353374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:05 Heat of formation + Delta-G solvation = -14.038253 kcal Electronic energy + Delta-G solvation = -30813.340681 eV Core-core repulsion = 27005.255870 eV Total energy + Delta-G solvation = -3808.084811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.29550 -41.20151 -38.57251 -36.35286 -34.98078 -34.47881 -33.02216 -32.46282 -31.69132 -30.98865 -29.85953 -27.23711 -26.99127 -24.83882 -24.61986 -23.49349 -23.10642 -21.87732 -21.13324 -19.95637 -19.68927 -19.15422 -18.35297 -17.03492 -16.78651 -16.38741 -16.16325 -16.09800 -15.61589 -15.51055 -15.12493 -14.87195 -14.81155 -14.63287 -14.38589 -14.18345 -13.95431 -13.85390 -13.70946 -13.59450 -13.36685 -13.09000 -13.00167 -12.96671 -12.84772 -12.72536 -12.66306 -12.52340 -12.36680 -12.12708 -12.09775 -11.96560 -11.85896 -11.41086 -11.10198 -11.03089 -10.94876 -10.28497 -9.75232 -9.40434 -9.00088 -8.89787 -7.92242 -5.17728 0.91131 1.41992 1.44236 1.52565 1.59493 1.95340 2.53815 2.60155 2.86360 3.40247 3.73319 3.83787 3.87047 3.90196 3.92527 4.09097 4.12245 4.13911 4.28016 4.29856 4.37619 4.40542 4.50507 4.55914 4.62298 4.64703 4.67312 4.70267 4.80913 4.84703 4.88308 4.89630 4.93785 5.02352 5.10273 5.14997 5.21441 5.22589 5.23830 5.29308 5.33644 5.36365 5.43469 5.47028 5.55624 5.57641 5.88383 5.93007 6.19874 6.30009 6.47051 6.93752 7.36822 7.65159 8.13595 8.41917 9.30770 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.007039 B = 0.005756 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3977.030891 B = 4863.456029 C = 7652.568655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 N -0.438 5.438 4 C -0.009 4.009 5 C -0.187 4.187 6 C -0.266 4.266 7 C 0.592 3.408 8 O -0.581 6.581 9 N -0.697 5.697 10 C 0.186 3.814 11 C 0.141 3.859 12 N -0.726 5.726 13 C -0.240 4.240 14 H 0.060 0.940 15 C -0.070 4.070 16 N -0.962 5.962 17 Si 0.967 3.033 18 H -0.283 1.283 19 H -0.292 1.292 20 H -0.279 1.279 21 C -0.113 4.113 22 C -0.112 4.112 23 C -0.111 4.111 24 C -0.106 4.106 25 C -0.120 4.120 26 C 0.088 3.912 27 C -0.084 4.084 28 H 0.102 0.898 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.200 0.800 34 H 0.149 0.851 35 H 0.399 0.601 36 H 0.020 0.980 37 H 0.015 0.985 38 H 0.376 0.624 39 H 0.250 0.750 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.051 0.949 48 H 0.072 0.928 49 H 0.057 0.943 50 H 0.085 0.915 51 H 0.066 0.934 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.033 -14.493 -3.170 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.028 4.028 3 N -0.115 5.115 4 C -0.136 4.136 5 C -0.211 4.211 6 C -0.276 4.276 7 C 0.383 3.617 8 O -0.464 6.464 9 N -0.347 5.347 10 C 0.099 3.901 11 C 0.014 3.986 12 N -0.369 5.369 13 C -0.372 4.372 14 H 0.078 0.922 15 C -0.263 4.263 16 N -0.613 5.613 17 Si 0.796 3.204 18 H -0.210 1.210 19 H -0.219 1.219 20 H -0.204 1.204 21 C -0.151 4.151 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.143 4.143 25 C -0.159 4.159 26 C -0.030 4.030 27 C -0.142 4.142 28 H 0.120 0.880 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.140 0.860 33 H 0.217 0.783 34 H 0.166 0.834 35 H 0.235 0.765 36 H 0.038 0.962 37 H 0.032 0.968 38 H 0.210 0.790 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.075 0.925 50 H 0.103 0.897 51 H 0.085 0.915 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.673 -14.865 -2.232 20.320 hybrid contribution -1.441 0.591 -0.411 1.611 sum 12.232 -14.274 -2.642 18.982 Atomic orbital electron populations 1.22186 0.94455 1.04125 1.01998 1.22200 0.95454 0.78662 1.06458 1.43947 1.49539 1.13023 1.04963 1.22139 1.06301 0.92686 0.92445 1.22180 1.08101 0.98309 0.92514 1.20411 1.17291 0.95169 0.94708 1.17539 0.75093 0.82339 0.86761 1.90597 1.55605 1.83838 1.16340 1.45555 1.67144 1.10408 1.11636 1.20385 0.93251 0.85356 0.91078 1.21152 0.88341 0.96638 0.92509 1.42264 1.03127 1.86719 1.04776 1.19515 0.86320 1.39433 0.91931 0.92176 1.25405 1.01406 1.03976 0.95480 1.69799 1.32193 1.59003 1.00309 0.85237 0.80513 0.77723 0.76904 1.21022 1.21874 1.20434 1.21703 0.98108 0.96382 0.98909 1.21524 0.93667 1.01886 0.97905 1.21513 0.97992 0.97952 0.97354 1.21396 0.95656 0.98470 0.98790 1.21812 0.94675 1.01935 0.97490 1.20412 1.01106 0.90964 0.90476 1.20435 1.02471 1.02267 0.88980 0.87959 0.93859 0.92838 0.87936 0.86019 0.78284 0.83361 0.76505 0.96198 0.96766 0.79050 0.94164 0.93094 0.90443 0.90305 0.92021 0.91361 0.90334 0.91180 0.93065 0.90953 0.92451 0.89687 0.91546 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 10.24 71.98 0.74 -1.91 16 2 C 0.09 1.34 6.21 86.38 0.54 1.87 16 3 N -0.44 -10.61 2.68 -509.92 -1.37 -11.98 16 4 C -0.01 -0.23 11.32 83.12 0.94 0.71 16 5 C -0.19 -5.69 10.56 23.62 0.25 -5.44 16 6 C -0.27 -9.76 6.29 -19.04 -0.12 -9.88 16 7 C 0.59 24.35 7.22 86.62 0.63 24.97 16 8 O -0.58 -26.85 11.11 -4.12 -0.05 -26.90 16 9 N -0.70 -25.51 3.57 -426.30 -1.52 -27.03 16 10 C 0.19 6.74 0.32 3.60 0.00 6.74 16 11 C 0.14 6.67 4.79 86.38 0.41 7.08 16 12 N -0.73 -40.10 5.19 -343.45 -1.78 -41.88 16 13 C -0.24 -14.63 9.99 84.03 0.84 -13.79 16 14 H 0.06 3.66 7.83 -2.91 -0.02 3.64 16 15 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 16 N -0.96 -60.79 13.06 21.65 0.28 -60.51 16 17 Si 0.97 49.11 29.55 68.60 2.03 51.13 16 18 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 19 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 20 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 21 C -0.11 -3.57 4.67 30.60 0.14 -3.43 16 22 C -0.11 -2.63 5.75 30.60 0.18 -2.45 16 23 C -0.11 -2.28 5.92 30.59 0.18 -2.10 16 24 C -0.11 -2.63 5.77 30.60 0.18 -2.45 16 25 C -0.12 -3.83 4.58 30.59 0.14 -3.69 16 26 C 0.09 2.81 6.89 41.78 0.29 3.09 16 27 C -0.08 -2.44 9.31 71.24 0.66 -1.78 16 28 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.04 0.88 7.52 -2.39 -0.02 0.86 16 30 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.10 1.21 7.74 -2.39 -0.02 1.19 16 32 H 0.12 1.04 8.11 -2.39 -0.02 1.02 16 33 H 0.20 3.12 8.06 -2.91 -0.02 3.09 16 34 H 0.15 4.06 7.71 -2.91 -0.02 4.03 16 35 H 0.40 13.22 6.34 -92.71 -0.59 12.64 16 36 H 0.02 1.06 6.25 -2.39 -0.01 1.05 16 37 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.38 21.42 6.46 -92.71 -0.60 20.82 16 39 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.05 1.89 7.11 -2.39 -0.02 1.87 16 41 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.42 6.78 -2.39 -0.02 1.41 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.05 1.39 7.60 -2.38 -0.02 1.37 16 48 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.06 2.15 6.28 -2.38 -0.01 2.13 16 50 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.07 2.46 6.47 -2.39 -0.02 2.44 16 52 H 0.08 1.88 7.06 -2.39 -0.02 1.86 16 Total: -1.00 -78.76 398.85 3.78 -74.98 By element: Atomic # 1 Polarization: 48.71 SS G_CDS: -0.27 Total: 48.44 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 6.46 Total: -6.27 kcal Atomic # 7 Polarization: -137.00 SS G_CDS: -4.39 Total: -141.39 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 2.03 Total: 51.13 kcal Total: -78.76 3.78 -74.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755353374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.945 kcal (2) G-P(sol) polarization free energy of solvation -78.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds