Wall clock time and date at job start Tue Mar 31 2020 17:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 C 1.52999 * 109.46994 * 119.99755 * 2 1 3 5 5 H 1.08995 * 109.47098 * 185.00096 * 4 2 1 6 6 C 1.53004 * 109.47083 * 305.00173 * 4 2 1 7 7 C 1.53003 * 109.46807 * 184.99648 * 6 4 2 8 8 N 1.46501 * 109.46843 * 179.97438 * 7 6 4 9 9 C 1.34780 * 119.99967 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99829 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99932 * 180.02562 * 9 8 7 12 12 C 1.53001 * 109.47118 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47123 * 305.00313 * 12 11 9 14 14 C 1.53001 * 109.46749 * 65.00233 * 12 11 9 15 15 C 1.50700 * 109.47190 * 185.00138 * 12 11 9 16 16 C 1.38650 * 120.78808 * 299.72094 * 15 12 11 17 17 C 1.38211 * 119.15905 * 179.75626 * 16 15 12 18 18 N 1.31870 * 120.76278 * 0.53100 * 17 16 15 19 19 C 1.31866 * 121.72633 * 359.73965 * 18 17 16 20 20 C 1.38204 * 120.76555 * 359.97438 * 19 18 17 21 21 N 1.46498 * 109.47257 * 65.00162 * 4 2 1 22 22 C 1.36943 * 119.99752 * 84.72207 * 21 4 2 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 4 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 4 25 25 N 1.31611 * 120.00081 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 119.99814 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47483 * 90.00178 * 26 24 22 28 28 H 1.48498 * 109.47011 * 210.00042 * 26 24 22 29 29 H 1.48502 * 109.47495 * 329.99664 * 26 24 22 30 30 H 1.08995 * 109.47325 * 299.99981 * 1 2 3 31 31 H 1.09008 * 109.46564 * 60.00321 * 1 2 3 32 32 H 1.08997 * 109.46808 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47325 * 240.00019 * 2 1 3 34 34 H 1.09002 * 109.47383 * 59.99711 * 3 2 1 35 35 H 1.09000 * 109.47552 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.47107 * 299.99722 * 3 2 1 37 37 H 1.08993 * 109.47108 * 304.99684 * 6 4 2 38 38 H 1.08998 * 109.47048 * 65.00196 * 6 4 2 39 39 H 1.08988 * 109.47304 * 300.00405 * 7 6 4 40 40 H 1.08998 * 109.46869 * 60.00439 * 7 6 4 41 41 H 0.96997 * 120.00090 * 0.02562 * 8 7 6 42 42 H 1.09002 * 109.47320 * 300.00084 * 11 9 8 43 43 H 1.08998 * 109.47063 * 60.00511 * 11 9 8 44 44 H 1.08994 * 109.47335 * 299.99523 * 14 12 11 45 45 H 1.08998 * 109.47243 * 60.00153 * 14 12 11 46 46 H 1.09004 * 109.46944 * 180.02562 * 14 12 11 47 47 H 1.08004 * 120.42176 * 359.97438 * 16 15 12 48 48 H 1.07999 * 119.61478 * 180.24824 * 17 16 15 49 49 H 1.08002 * 119.61664 * 180.02562 * 19 18 17 50 50 H 1.07997 * 120.41745 * 179.97438 * 20 19 18 51 51 H 0.97001 * 120.00384 * 265.00562 * 21 4 2 52 52 H 0.97008 * 120.00329 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6443 1.2952 6 6 1.4299 -0.0761 2.4953 7 6 2.0342 -0.7143 3.7477 8 7 1.4504 -0.0962 4.9408 9 6 1.8350 -0.5027 6.1670 10 8 2.6646 -1.3798 6.2826 11 6 1.2341 0.1327 7.3943 12 6 1.8384 -0.5053 8.6467 13 1 1.7022 -1.5860 8.6058 14 6 3.3323 -0.1817 8.7136 15 6 1.1506 0.0417 9.8710 16 6 1.1817 1.3982 10.1559 17 6 0.5351 1.8641 11.2851 18 7 -0.0965 1.0337 12.0916 19 6 -0.1420 -0.2627 11.8550 20 6 0.4765 -0.8003 10.7421 21 7 1.6525 -2.1328 1.1907 22 6 2.4317 -3.0290 0.5088 23 1 3.3343 -2.6959 0.0180 24 6 2.0615 -4.3654 0.4484 25 7 2.8107 -5.2268 -0.2066 26 14 0.5000 -4.9413 1.2966 27 1 -0.6423 -4.8394 0.3533 28 1 0.6623 -6.3534 1.7267 29 1 0.2387 -4.0891 2.4844 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6436 0.9926 2.4928 38 1 0.3509 -0.2309 2.4933 39 1 1.8205 -1.7830 3.7502 40 1 3.1131 -0.5595 3.7498 41 1 0.7867 0.6050 4.8484 42 1 1.4482 1.2015 7.3920 43 1 0.1551 -0.0218 7.3920 44 1 3.8298 -0.5774 7.8282 45 1 3.4685 0.8990 8.7545 46 1 3.7630 -0.6366 9.6056 47 1 1.7015 2.0827 9.5018 48 1 0.5511 2.9199 11.5119 49 1 -0.6694 -0.9119 12.5383 50 1 0.4361 -1.8630 10.5539 51 1 0.8418 -2.4319 1.6314 52 1 2.5522 -6.1609 -0.2485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755551360.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:35 Heat of formation + Delta-G solvation = -37.138435 kcal Electronic energy + Delta-G solvation = -28394.557975 eV Core-core repulsion = 24585.471465 eV Total energy + Delta-G solvation = -3809.086510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.40305 -40.63435 -39.19031 -36.81152 -35.81359 -35.09670 -32.95199 -32.25778 -31.98783 -31.29085 -28.86382 -27.89539 -26.71106 -25.27118 -24.41278 -24.23993 -23.26216 -22.02325 -21.01116 -20.09065 -19.50840 -18.35795 -17.36279 -17.25024 -16.98691 -16.80798 -16.49106 -16.36245 -16.03583 -15.58456 -15.33500 -15.02729 -14.97282 -14.75541 -14.64657 -14.49328 -14.25662 -14.15261 -13.94540 -13.49597 -13.25216 -12.99508 -12.82783 -12.72850 -12.62715 -12.60765 -12.45988 -12.28459 -12.19242 -12.04647 -11.83131 -11.77459 -11.76445 -11.53245 -11.20793 -10.91751 -10.76243 -10.46644 -10.36682 -10.04213 -10.03494 -9.23769 -8.00810 -5.31304 0.24590 0.30949 1.33518 1.37576 1.43927 1.69316 2.23445 2.47730 2.90488 3.31248 3.50702 3.63625 3.64979 3.67737 3.92816 3.96083 4.04683 4.13429 4.18613 4.24500 4.26529 4.27706 4.38801 4.46219 4.49894 4.55538 4.65299 4.73031 4.78619 4.79643 4.82246 4.91868 4.94191 4.95342 4.98811 5.09129 5.12149 5.15263 5.18652 5.28140 5.31737 5.37461 5.42727 5.49027 5.56435 5.63959 5.67081 5.82404 5.83937 6.24032 6.63685 7.07359 7.11473 7.35451 7.89187 8.06323 9.21476 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013509 B = 0.002362 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.131258 B =11853.880987 C =12959.965531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 C -0.137 4.137 4 C 0.182 3.818 5 H 0.037 0.963 6 C -0.122 4.122 7 C 0.128 3.872 8 N -0.715 5.715 9 C 0.502 3.498 10 O -0.584 6.584 11 C -0.122 4.122 12 C -0.034 4.034 13 H 0.070 0.930 14 C -0.146 4.146 15 C -0.035 4.035 16 C -0.164 4.164 17 C 0.089 3.911 18 N -0.519 5.519 19 C 0.089 3.911 20 C -0.178 4.178 21 N -0.745 5.745 22 C -0.215 4.215 23 H 0.055 0.945 24 C -0.068 4.068 25 N -0.987 5.987 26 Si 0.949 3.051 27 H -0.277 1.277 28 H -0.303 1.303 29 H -0.255 1.255 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.036 0.964 40 H 0.048 0.952 41 H 0.418 0.582 42 H 0.127 0.873 43 H 0.113 0.887 44 H 0.055 0.945 45 H 0.072 0.928 46 H 0.051 0.949 47 H 0.158 0.842 48 H 0.177 0.823 49 H 0.170 0.830 50 H 0.142 0.858 51 H 0.363 0.637 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 21.469 20.378 30.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 C -0.195 4.195 4 C 0.073 3.927 5 H 0.055 0.945 6 C -0.160 4.160 7 C 0.004 3.996 8 N -0.368 5.368 9 C 0.290 3.710 10 O -0.464 6.464 11 C -0.161 4.161 12 C -0.053 4.053 13 H 0.089 0.911 14 C -0.203 4.203 15 C -0.043 4.043 16 C -0.183 4.183 17 C -0.067 4.067 18 N -0.228 5.228 19 C -0.067 4.067 20 C -0.198 4.198 21 N -0.388 5.388 22 C -0.346 4.346 23 H 0.073 0.927 24 C -0.258 4.258 25 N -0.639 5.639 26 Si 0.778 3.222 27 H -0.203 1.203 28 H -0.230 1.230 29 H -0.180 1.180 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.255 0.745 42 H 0.145 0.855 43 H 0.131 0.869 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.070 0.930 47 H 0.176 0.824 48 H 0.194 0.806 49 H 0.187 0.813 50 H 0.160 0.840 51 H 0.196 0.804 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.148 21.120 21.084 30.935 hybrid contribution -0.212 -1.663 -0.915 1.910 sum -8.359 19.457 20.169 29.244 Atomic orbital electron populations 1.21738 0.94717 1.00665 1.02142 1.21620 0.96853 0.96479 0.98360 1.21817 1.00497 0.94503 1.02698 1.20407 0.96840 0.82162 0.93250 0.94508 1.22056 1.01197 1.01363 0.91386 1.21109 0.97286 0.96732 0.84489 1.45935 1.44766 1.41168 1.04945 1.21306 0.81575 0.82329 0.85763 1.90715 1.35195 1.33200 1.87268 1.21738 1.02274 1.02675 0.89430 1.19818 0.95249 1.00082 0.90172 0.91120 1.21899 0.94128 1.02190 1.02065 1.20328 0.94547 0.94196 0.95214 1.22245 1.01096 0.95599 0.99389 1.23202 0.92385 1.00674 0.90422 1.67696 1.18324 1.05154 1.31672 1.23061 0.96253 0.91625 0.95790 1.22301 0.99455 1.01861 0.96167 1.42786 1.27632 1.04839 1.63555 1.18994 1.03296 0.89091 1.23248 0.92740 1.25423 1.02000 0.96331 1.02087 1.69877 1.41614 1.03027 1.49356 0.85489 0.80496 0.77033 0.79223 1.20304 1.22997 1.18032 0.90512 0.92709 0.95012 0.94801 0.90340 0.93527 0.92336 0.87237 0.89824 0.94587 0.93360 0.74485 0.85467 0.86905 0.92585 0.90928 0.93035 0.82421 0.80604 0.81258 0.84030 0.80378 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 8.59 71.98 0.62 -2.96 16 2 C -0.11 -3.39 2.87 -10.79 -0.03 -3.42 16 3 C -0.14 -3.00 8.95 71.98 0.64 -2.36 16 4 C 0.18 6.18 2.06 44.99 0.09 6.27 16 5 H 0.04 1.40 8.08 -2.39 -0.02 1.38 16 6 C -0.12 -2.88 4.07 30.60 0.12 -2.76 16 7 C 0.13 3.64 5.56 86.38 0.48 4.12 16 8 N -0.72 -14.30 5.56 -463.07 -2.57 -16.88 16 9 C 0.50 11.56 7.55 87.66 0.66 12.22 16 10 O -0.58 -19.81 13.97 -3.04 -0.04 -19.85 16 11 C -0.12 -1.61 4.93 29.85 0.15 -1.47 16 12 C -0.03 -0.56 2.24 -11.54 -0.03 -0.59 16 13 H 0.07 1.46 7.76 -2.39 -0.02 1.44 16 14 C -0.15 -2.62 8.75 71.98 0.63 -1.99 16 15 C -0.03 -0.49 4.80 -19.67 -0.09 -0.59 16 16 C -0.16 -1.85 8.90 22.36 0.20 -1.65 16 17 C 0.09 1.16 11.18 84.68 0.95 2.11 16 18 N -0.52 -9.08 10.36 -195.84 -2.03 -11.11 16 19 C 0.09 1.35 11.18 84.68 0.95 2.30 16 20 C -0.18 -2.63 9.76 22.36 0.22 -2.41 16 21 N -0.75 -33.14 3.83 -322.94 -1.24 -34.38 16 22 C -0.21 -12.17 10.41 84.03 0.87 -11.29 16 23 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 24 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 25 N -0.99 -64.65 13.97 21.65 0.30 -64.34 16 26 Si 0.95 46.66 27.74 68.60 1.90 48.56 16 27 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 29 H -0.26 -11.43 6.52 99.48 0.65 -10.78 16 30 H 0.08 1.54 6.46 -2.39 -0.02 1.53 16 31 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.03 1.00 7.75 -2.39 -0.02 0.99 16 33 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.28 6.46 -2.39 -0.02 1.26 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 1.81 6.34 -2.39 -0.02 1.79 16 38 H 0.08 1.78 6.65 -2.39 -0.02 1.76 16 39 H 0.04 1.34 7.75 -2.39 -0.02 1.32 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.42 4.72 8.47 -92.71 -0.79 3.93 16 42 H 0.13 0.90 7.68 -2.39 -0.02 0.88 16 43 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.06 1.37 5.95 -2.39 -0.01 1.36 16 45 H 0.07 0.96 7.46 -2.39 -0.02 0.95 16 46 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.16 0.95 7.35 -2.91 -0.02 0.93 16 48 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 49 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 50 H 0.14 1.79 8.01 -2.91 -0.02 1.76 16 51 H 0.36 15.72 5.66 -92.71 -0.52 15.19 16 52 H 0.25 15.99 8.31 -92.70 -0.77 15.22 16 Total: -1.00 -80.21 410.78 2.77 -77.44 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: -0.46 Total: 28.60 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 6.90 Total: -8.03 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -5.54 Total: -126.71 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.04 Total: -19.85 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.90 Total: 48.56 kcal Total: -80.21 2.77 -77.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755551360.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.301 kcal (2) G-P(sol) polarization free energy of solvation -80.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds