Wall clock time and date at job start Tue Mar 31 2020 17:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 C 1.52999 * 109.47278 * 120.00121 * 2 1 3 5 5 H 1.08995 * 109.47098 * 59.99732 * 4 2 1 6 6 C 1.53004 * 109.47083 * 179.97438 * 4 2 1 7 7 C 1.53003 * 109.46807 * 184.99648 * 6 4 2 8 8 N 1.46501 * 109.46843 * 179.97438 * 7 6 4 9 9 C 1.34780 * 119.99967 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99829 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99932 * 180.02562 * 9 8 7 12 12 C 1.53001 * 109.47118 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46811 * 55.00093 * 12 11 9 14 14 C 1.52998 * 109.47326 * 295.00306 * 12 11 9 15 15 C 1.50701 * 109.47324 * 174.99885 * 12 11 9 16 16 C 1.38649 * 120.78543 * 59.72111 * 15 12 11 17 17 C 1.38207 * 119.16317 * 179.75459 * 16 15 12 18 18 N 1.31874 * 120.75904 * 0.53355 * 17 16 15 19 19 C 1.31872 * 121.72738 * 359.74067 * 18 17 16 20 20 C 1.38206 * 120.76467 * 359.97438 * 19 18 17 21 21 N 1.46498 * 109.47257 * 299.99798 * 4 2 1 22 22 C 1.36943 * 119.99752 * 84.72207 * 21 4 2 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 4 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 4 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47213 * 60.00246 * 26 24 22 28 28 H 1.48502 * 109.47317 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47081 * 299.99875 * 26 24 22 30 30 H 1.08996 * 109.47253 * 59.99946 * 1 2 3 31 31 H 1.08995 * 109.47275 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47146 * 299.99852 * 1 2 3 33 33 H 1.09003 * 109.47146 * 240.00148 * 2 1 3 34 34 H 1.09003 * 109.46926 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47115 * 299.99600 * 3 2 1 36 36 H 1.08994 * 109.47213 * 60.00214 * 3 2 1 37 37 H 1.08993 * 109.47108 * 304.99684 * 6 4 2 38 38 H 1.08998 * 109.47048 * 65.00196 * 6 4 2 39 39 H 1.08988 * 109.47304 * 300.00405 * 7 6 4 40 40 H 1.08998 * 109.46869 * 60.00439 * 7 6 4 41 41 H 0.96997 * 120.00090 * 0.02562 * 8 7 6 42 42 H 1.09002 * 109.47320 * 300.00084 * 11 9 8 43 43 H 1.08998 * 109.47063 * 60.00511 * 11 9 8 44 44 H 1.08994 * 109.47442 * 179.97438 * 14 12 11 45 45 H 1.09007 * 109.46878 * 300.00142 * 14 12 11 46 46 H 1.08999 * 109.47255 * 59.99497 * 14 12 11 47 47 H 1.08006 * 120.42257 * 0.02562 * 16 15 12 48 48 H 1.07989 * 119.62282 * 180.29532 * 17 16 15 49 49 H 1.07997 * 119.61930 * 180.02562 * 19 18 17 50 50 H 1.08000 * 120.42009 * 180.02562 * 20 19 18 51 51 H 0.97001 * 120.00384 * 265.00562 * 21 4 2 52 52 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 3.5700 -0.7218 1.2488 7 6 4.0800 -1.5492 2.4305 8 7 5.5450 -1.5502 2.4298 9 6 6.2189 -2.2194 3.3862 10 8 5.6124 -2.8211 4.2470 11 6 7.7258 -2.2200 3.3858 12 6 8.2358 -3.0474 4.5674 13 1 7.8008 -4.0460 4.5263 14 6 7.8316 -2.3686 5.8776 15 6 9.7377 -3.1505 4.4975 16 6 10.5292 -2.0125 4.5259 17 6 11.9034 -2.1463 4.4650 18 7 12.4616 -3.3373 4.3702 19 6 11.7400 -4.4405 4.3350 20 6 10.3604 -4.3852 4.3974 21 7 1.5518 -0.0307 2.4454 22 6 0.3079 -0.3170 2.9415 23 1 -0.3113 -1.0552 2.4535 24 6 -0.1571 0.3414 4.0716 25 7 0.5974 1.2414 4.6660 26 14 -1.8535 -0.0496 4.7487 27 1 -1.9200 -1.4865 5.1180 28 1 -2.1108 0.7833 5.9509 29 1 -2.8787 0.2438 3.7152 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.9330 -1.1564 0.3175 38 1 3.9337 0.3018 1.3382 39 1 3.7170 -1.1147 3.3618 40 1 3.7163 -2.5728 2.3412 41 1 6.0300 -1.0686 1.7416 42 1 8.0888 -2.6549 2.4546 43 1 8.0895 -1.1963 3.4748 44 1 8.1945 -2.9583 6.7194 45 1 8.2666 -1.3700 5.9187 46 1 6.7454 -2.2941 5.9282 47 1 10.0778 -1.0340 4.5992 48 1 12.5272 -1.2651 4.4914 49 1 12.2327 -5.3984 4.2574 50 1 9.7749 -5.2922 4.3686 51 1 2.1078 0.6323 2.8837 52 1 0.2726 1.7012 5.4559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755551361.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:41 Heat of formation + Delta-G solvation = -17.804143 kcal Electronic energy + Delta-G solvation = -28339.225037 eV Core-core repulsion = 24530.976925 eV Total energy + Delta-G solvation = -3808.248112 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.67471 -39.61357 -37.59189 -35.97538 -34.63932 -32.83719 -31.63381 -31.40313 -30.92694 -29.48031 -27.95490 -26.43324 -25.22534 -24.39845 -23.69084 -23.06850 -21.41362 -21.01947 -20.01522 -18.64779 -17.56808 -17.15203 -16.59890 -16.37652 -15.92081 -15.70960 -15.52200 -14.96209 -14.40992 -14.32221 -14.10507 -14.05250 -13.84655 -13.59706 -13.49618 -13.20605 -13.08108 -12.63839 -12.53167 -12.43746 -12.11599 -11.66567 -11.50418 -11.34430 -11.29976 -11.15541 -11.03001 -10.85391 -10.84496 -10.68267 -10.35190 -10.21423 -10.06343 -9.94590 -9.84528 -9.75017 -9.52807 -9.44683 -9.40793 -8.87001 -8.78297 -6.92467 -5.74598 -3.01626 0.84007 0.95352 2.74262 3.27252 3.45094 3.50415 3.50755 3.53613 4.16960 4.29231 4.37497 4.61137 4.67060 4.81133 4.83665 4.86693 4.93397 5.17653 5.26073 5.34107 5.37454 5.40634 5.46966 5.50247 5.50999 5.63697 5.66964 5.74005 5.79120 5.80704 5.90573 5.96810 6.02890 6.16181 6.17627 6.27223 6.31491 6.35076 6.40960 6.43248 6.59218 6.61251 6.67628 6.74760 6.85574 6.86673 7.07417 7.37394 7.62801 7.67958 7.73095 8.35886 8.43764 9.55345 10.11911 10.46919 11.47814 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.002145 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.290927 B =13048.589757 C =14069.670976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.138 4.138 4 C 0.183 3.817 5 H 0.048 0.952 6 C -0.134 4.134 7 C 0.122 3.878 8 N -0.729 5.729 9 C 0.508 3.492 10 O -0.534 6.534 11 C -0.134 4.134 12 C -0.038 4.038 13 H 0.091 0.909 14 C -0.151 4.151 15 C -0.029 4.029 16 C -0.168 4.168 17 C 0.098 3.902 18 N -0.493 5.493 19 C 0.098 3.902 20 C -0.170 4.170 21 N -0.717 5.717 22 C -0.230 4.230 23 H 0.071 0.929 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.293 1.293 29 H -0.287 1.287 30 H 0.028 0.972 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.035 0.965 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.395 0.605 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.135 0.865 48 H 0.154 0.846 49 H 0.154 0.846 50 H 0.135 0.865 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.114 -6.319 -5.989 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.195 4.195 4 C 0.072 3.928 5 H 0.066 0.934 6 C -0.172 4.172 7 C -0.001 4.001 8 N -0.380 5.380 9 C 0.294 3.706 10 O -0.410 6.410 11 C -0.174 4.174 12 C -0.056 4.056 13 H 0.109 0.891 14 C -0.208 4.208 15 C -0.037 4.037 16 C -0.188 4.188 17 C -0.059 4.059 18 N -0.202 5.202 19 C -0.059 4.059 20 C -0.190 4.190 21 N -0.358 5.358 22 C -0.362 4.362 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.732 3.268 27 H -0.214 1.214 28 H -0.219 1.219 29 H -0.214 1.214 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.229 0.771 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.153 0.847 48 H 0.172 0.828 49 H 0.171 0.829 50 H 0.153 0.847 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 20.392 -6.883 -5.336 22.174 hybrid contribution -1.491 0.405 0.134 1.551 sum 18.901 -6.478 -5.202 20.647 Atomic orbital electron populations 1.21854 0.95333 1.00784 1.01964 1.21688 0.96618 0.96507 0.98236 1.21750 0.99350 0.96962 1.01485 1.20186 0.89368 0.95466 0.87751 0.93389 1.22084 0.98464 1.00019 0.96654 1.21450 0.77266 1.00554 1.00803 1.46155 1.08467 1.53193 1.30215 1.20480 0.89656 0.79019 0.81457 1.90711 1.70327 1.43368 1.36636 1.21734 0.92933 1.02569 1.00151 1.19935 0.88897 1.01337 0.95467 0.89068 1.21977 1.04247 0.99510 0.95038 1.20396 0.96170 0.93102 0.94019 1.22055 0.94968 0.99558 1.02223 1.22764 0.92666 0.95396 0.95035 1.67676 1.41205 0.98868 1.12421 1.22758 0.90921 0.97065 0.95120 1.22127 0.96216 0.98339 1.02303 1.42388 1.17748 1.47475 1.28220 1.19140 0.92556 1.17561 1.06900 0.91151 1.24689 0.98234 0.99429 0.98549 1.69636 1.36834 1.29125 1.22466 0.86362 0.84561 0.77523 0.78330 1.21357 1.21856 1.21393 0.95255 0.94212 0.89343 0.93685 0.93986 0.94630 0.91280 0.92111 0.91333 0.89729 0.92000 0.77133 0.89000 0.88739 0.92734 0.92926 0.89488 0.84739 0.82831 0.82852 0.84732 0.78286 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.25 37.16 0.31 -2.26 16 2 C -0.11 -1.81 2.80 -90.62 -0.25 -2.07 16 3 C -0.14 -2.23 8.68 37.16 0.32 -1.91 16 4 C 0.18 3.30 2.19 -67.93 -0.15 3.15 16 5 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 6 C -0.13 -1.92 4.37 -26.73 -0.12 -2.04 16 7 C 0.12 1.91 5.56 -4.04 -0.02 1.89 16 8 N -0.73 -8.90 5.56 -60.30 -0.33 -9.24 16 9 C 0.51 6.63 7.55 -10.99 -0.08 6.55 16 10 O -0.53 -9.29 13.96 5.56 0.08 -9.22 16 11 C -0.13 -1.19 4.92 -27.88 -0.14 -1.32 16 12 C -0.04 -0.36 2.24 -91.77 -0.21 -0.56 16 13 H 0.09 0.95 7.76 -51.93 -0.40 0.55 16 14 C -0.15 -1.61 8.76 37.16 0.33 -1.29 16 15 C -0.03 -0.25 4.80 -104.32 -0.50 -0.75 16 16 C -0.17 -1.34 8.89 -39.44 -0.35 -1.69 16 17 C 0.10 0.82 11.18 -17.54 -0.20 0.62 16 18 N -0.49 -4.89 10.36 -13.25 -0.14 -5.03 16 19 C 0.10 0.83 11.18 -17.55 -0.20 0.63 16 20 C -0.17 -1.38 9.76 -39.44 -0.39 -1.77 16 21 N -0.72 -16.26 3.69 -53.43 -0.20 -16.45 16 22 C -0.23 -5.96 7.55 -15.06 -0.11 -6.07 16 23 H 0.07 1.79 7.38 -52.49 -0.39 1.41 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.27 13.06 55.49 0.72 -26.55 16 26 Si 0.90 22.12 29.55 -169.99 -5.02 17.10 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.90 5.99 -51.93 -0.31 1.59 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.04 0.60 6.55 -51.93 -0.34 0.26 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 1.32 7.60 -51.93 -0.39 0.93 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.98 6.71 -51.93 -0.35 0.63 16 39 H 0.08 1.67 7.75 -51.94 -0.40 1.27 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.40 3.53 8.47 -40.82 -0.35 3.18 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.69 7.65 -51.93 -0.40 0.29 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.50 7.50 -51.93 -0.39 0.11 16 46 H 0.09 1.19 5.95 -51.93 -0.31 0.88 16 47 H 0.13 0.85 7.35 -52.48 -0.39 0.46 16 48 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 49 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 50 H 0.13 0.87 8.01 -52.49 -0.42 0.45 16 51 H 0.38 9.42 7.80 -40.82 -0.32 9.10 16 52 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 411.81 15.07 6.21 6.21 Total: -1.00 -31.58 411.81 -9.47 -41.05 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -8.94 Total: 11.47 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -1.85 Total: -9.34 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.05 Total: -57.27 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.58 -9.47 -41.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755551361.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.249 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds