Wall clock time and date at job start Tue Mar 31 2020 17:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 C 1.52999 * 109.47278 * 120.00121 * 2 1 3 5 5 H 1.08995 * 109.47098 * 59.99732 * 4 2 1 6 6 C 1.53004 * 109.47083 * 179.97438 * 4 2 1 7 7 C 1.53003 * 109.46807 * 184.99648 * 6 4 2 8 8 N 1.46501 * 109.46843 * 179.97438 * 7 6 4 9 9 C 1.34780 * 119.99967 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99829 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99932 * 180.02562 * 9 8 7 12 12 C 1.53001 * 109.47118 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46811 * 55.00093 * 12 11 9 14 14 C 1.52998 * 109.47326 * 295.00306 * 12 11 9 15 15 C 1.50701 * 109.47324 * 174.99885 * 12 11 9 16 16 C 1.38649 * 120.78543 * 59.72111 * 15 12 11 17 17 C 1.38207 * 119.16317 * 179.75459 * 16 15 12 18 18 N 1.31874 * 120.75904 * 0.53355 * 17 16 15 19 19 C 1.31872 * 121.72738 * 359.74067 * 18 17 16 20 20 C 1.38206 * 120.76467 * 359.97438 * 19 18 17 21 21 N 1.46498 * 109.47257 * 299.99798 * 4 2 1 22 22 C 1.36943 * 119.99752 * 84.72207 * 21 4 2 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 4 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 4 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47213 * 60.00246 * 26 24 22 28 28 H 1.48502 * 109.47317 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47081 * 299.99875 * 26 24 22 30 30 H 1.08996 * 109.47253 * 59.99946 * 1 2 3 31 31 H 1.08995 * 109.47275 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47146 * 299.99852 * 1 2 3 33 33 H 1.09003 * 109.47146 * 240.00148 * 2 1 3 34 34 H 1.09003 * 109.46926 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47115 * 299.99600 * 3 2 1 36 36 H 1.08994 * 109.47213 * 60.00214 * 3 2 1 37 37 H 1.08993 * 109.47108 * 304.99684 * 6 4 2 38 38 H 1.08998 * 109.47048 * 65.00196 * 6 4 2 39 39 H 1.08988 * 109.47304 * 300.00405 * 7 6 4 40 40 H 1.08998 * 109.46869 * 60.00439 * 7 6 4 41 41 H 0.96997 * 120.00090 * 0.02562 * 8 7 6 42 42 H 1.09002 * 109.47320 * 300.00084 * 11 9 8 43 43 H 1.08998 * 109.47063 * 60.00511 * 11 9 8 44 44 H 1.08994 * 109.47442 * 179.97438 * 14 12 11 45 45 H 1.09007 * 109.46878 * 300.00142 * 14 12 11 46 46 H 1.08999 * 109.47255 * 59.99497 * 14 12 11 47 47 H 1.08006 * 120.42257 * 0.02562 * 16 15 12 48 48 H 1.07989 * 119.62282 * 180.29532 * 17 16 15 49 49 H 1.07997 * 119.61930 * 180.02562 * 19 18 17 50 50 H 1.08000 * 120.42009 * 180.02562 * 20 19 18 51 51 H 0.97001 * 120.00384 * 265.00562 * 21 4 2 52 52 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 3.5700 -0.7218 1.2488 7 6 4.0800 -1.5492 2.4305 8 7 5.5450 -1.5502 2.4298 9 6 6.2189 -2.2194 3.3862 10 8 5.6124 -2.8211 4.2470 11 6 7.7258 -2.2200 3.3858 12 6 8.2358 -3.0474 4.5674 13 1 7.8008 -4.0460 4.5263 14 6 7.8316 -2.3686 5.8776 15 6 9.7377 -3.1505 4.4975 16 6 10.5292 -2.0125 4.5259 17 6 11.9034 -2.1463 4.4650 18 7 12.4616 -3.3373 4.3702 19 6 11.7400 -4.4405 4.3350 20 6 10.3604 -4.3852 4.3974 21 7 1.5518 -0.0307 2.4454 22 6 0.3079 -0.3170 2.9415 23 1 -0.3113 -1.0552 2.4535 24 6 -0.1571 0.3414 4.0716 25 7 0.5974 1.2414 4.6660 26 14 -1.8535 -0.0496 4.7487 27 1 -1.9200 -1.4865 5.1180 28 1 -2.1108 0.7833 5.9509 29 1 -2.8787 0.2438 3.7152 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.9330 -1.1564 0.3175 38 1 3.9337 0.3018 1.3382 39 1 3.7170 -1.1147 3.3618 40 1 3.7163 -2.5728 2.3412 41 1 6.0300 -1.0686 1.7416 42 1 8.0888 -2.6549 2.4546 43 1 8.0895 -1.1963 3.4748 44 1 8.1945 -2.9583 6.7194 45 1 8.2666 -1.3700 5.9187 46 1 6.7454 -2.2941 5.9282 47 1 10.0778 -1.0340 4.5992 48 1 12.5272 -1.2651 4.4914 49 1 12.2327 -5.3984 4.2574 50 1 9.7749 -5.2922 4.3686 51 1 2.1078 0.6323 2.8837 52 1 0.2726 1.7012 5.4559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755551361.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:40 Heat of formation + Delta-G solvation = -37.445754 kcal Electronic energy + Delta-G solvation = -28340.076761 eV Core-core repulsion = 24530.976925 eV Total energy + Delta-G solvation = -3809.099836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.38698 -40.60038 -39.03900 -36.81562 -35.84420 -34.71183 -32.68371 -32.16257 -31.85895 -31.10576 -28.95999 -27.79264 -26.64144 -25.30746 -24.77679 -24.28217 -22.62457 -22.00376 -20.93350 -20.10150 -19.15911 -18.35029 -17.35954 -17.19721 -16.93426 -16.64868 -16.48897 -16.32785 -15.96366 -15.37533 -15.26150 -15.16660 -14.96837 -14.72391 -14.55947 -14.29913 -14.18808 -13.97199 -13.89719 -13.44775 -13.03430 -12.90016 -12.72290 -12.69459 -12.54879 -12.49863 -12.40849 -12.27744 -12.20736 -12.04577 -11.79851 -11.75761 -11.74260 -11.27361 -11.12760 -10.83968 -10.70957 -10.45501 -10.35735 -10.03155 -9.99841 -8.86032 -7.85764 -5.08697 0.25701 0.31804 1.46716 1.48187 1.53106 1.71654 2.27114 2.60737 2.91449 3.47709 3.52094 3.66057 3.68941 3.93647 3.95292 4.02768 4.10906 4.17668 4.23645 4.25471 4.28330 4.37986 4.42965 4.47884 4.51822 4.65241 4.69429 4.73930 4.79936 4.85377 4.90491 4.95397 4.95586 5.01071 5.07772 5.09647 5.15105 5.21030 5.26750 5.32624 5.37354 5.44179 5.48343 5.50828 5.59026 5.60418 5.69052 5.83300 5.87907 6.37077 6.65979 7.08169 7.37612 7.44110 8.22426 8.43956 9.37672 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.002145 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.290927 B =13048.589757 C =14069.670976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C -0.132 4.132 4 C 0.175 3.825 5 H 0.037 0.963 6 C -0.118 4.118 7 C 0.134 3.866 8 N -0.716 5.716 9 C 0.502 3.498 10 O -0.584 6.584 11 C -0.122 4.122 12 C -0.031 4.031 13 H 0.077 0.923 14 C -0.148 4.148 15 C -0.035 4.035 16 C -0.167 4.167 17 C 0.089 3.911 18 N -0.518 5.518 19 C 0.090 3.910 20 C -0.174 4.174 21 N -0.723 5.723 22 C -0.207 4.207 23 H 0.072 0.928 24 C -0.079 4.079 25 N -0.969 5.969 26 Si 0.953 3.047 27 H -0.286 1.286 28 H -0.302 1.302 29 H -0.280 1.280 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.029 0.971 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.046 0.954 41 H 0.416 0.584 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.052 0.948 47 H 0.153 0.847 48 H 0.175 0.825 49 H 0.173 0.827 50 H 0.147 0.853 51 H 0.372 0.628 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.087 -6.557 -8.721 24.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.189 4.189 4 C 0.066 3.934 5 H 0.055 0.945 6 C -0.156 4.156 7 C 0.010 3.990 8 N -0.368 5.368 9 C 0.290 3.710 10 O -0.464 6.464 11 C -0.161 4.161 12 C -0.050 4.050 13 H 0.095 0.905 14 C -0.205 4.205 15 C -0.043 4.043 16 C -0.186 4.186 17 C -0.067 4.067 18 N -0.228 5.228 19 C -0.067 4.067 20 C -0.194 4.194 21 N -0.362 5.362 22 C -0.340 4.340 23 H 0.090 0.910 24 C -0.271 4.271 25 N -0.621 5.621 26 Si 0.784 3.216 27 H -0.212 1.212 28 H -0.228 1.228 29 H -0.206 1.206 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.253 0.747 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.170 0.830 48 H 0.192 0.808 49 H 0.190 0.810 50 H 0.164 0.836 51 H 0.204 0.796 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 22.387 -7.136 -8.148 24.870 hybrid contribution -2.069 0.407 0.904 2.294 sum 20.319 -6.729 -7.244 22.597 Atomic orbital electron populations 1.21796 0.96666 1.00428 1.00916 1.21623 0.95464 0.97019 0.98383 1.21680 1.00797 0.96124 1.00342 1.20460 0.91945 0.94391 0.86644 0.94482 1.21944 0.95494 1.00466 0.97677 1.21049 0.79452 0.99354 0.99175 1.45957 1.06993 1.53140 1.30750 1.21295 0.91451 0.77806 0.80415 1.90705 1.71716 1.45464 1.38534 1.21738 0.89178 1.04172 1.01058 1.19800 0.89661 1.00567 0.94998 0.90457 1.21909 1.01936 1.00582 0.96081 1.20320 0.95325 0.93758 0.94870 1.22231 0.94821 1.00070 1.01504 1.23152 0.93232 0.95693 0.94603 1.67700 1.42114 0.99725 1.13271 1.23104 0.91134 0.97623 0.94810 1.22306 0.96372 0.98783 1.01940 1.42514 1.16593 1.47437 1.29689 1.19426 0.93330 1.15598 1.05638 0.90971 1.25313 1.01259 1.00615 0.99895 1.69778 1.38250 1.31042 1.23058 0.85494 0.81689 0.76936 0.77437 1.21250 1.22846 1.20612 0.93203 0.94190 0.93443 0.90102 0.91651 0.92992 0.95158 0.88078 0.90628 0.94654 0.93582 0.74678 0.86337 0.86264 0.92784 0.91510 0.92912 0.82980 0.80821 0.80986 0.83560 0.79590 0.94631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 8.25 71.98 0.59 -4.28 16 2 C -0.10 -3.18 2.80 -10.80 -0.03 -3.21 16 3 C -0.13 -3.93 8.68 71.98 0.63 -3.30 16 4 C 0.17 6.08 2.19 44.99 0.10 6.17 16 5 H 0.04 1.38 8.08 -2.39 -0.02 1.36 16 6 C -0.12 -3.10 4.37 30.60 0.13 -2.96 16 7 C 0.13 4.16 5.56 86.38 0.48 4.64 16 8 N -0.72 -16.31 5.56 -463.07 -2.57 -18.88 16 9 C 0.50 12.73 7.55 87.66 0.66 13.39 16 10 O -0.58 -21.05 13.96 -3.04 -0.04 -21.09 16 11 C -0.12 -1.87 4.92 29.85 0.15 -1.72 16 12 C -0.03 -0.56 2.24 -11.54 -0.03 -0.58 16 13 H 0.08 1.60 7.76 -2.39 -0.02 1.58 16 14 C -0.15 -3.15 8.76 71.98 0.63 -2.52 16 15 C -0.03 -0.53 4.80 -19.67 -0.09 -0.62 16 16 C -0.17 -2.22 8.89 22.36 0.20 -2.02 16 17 C 0.09 1.30 11.18 84.68 0.95 2.25 16 18 N -0.52 -9.43 10.36 -195.84 -2.03 -11.46 16 19 C 0.09 1.36 11.18 84.68 0.95 2.31 16 20 C -0.17 -2.55 9.76 22.36 0.22 -2.33 16 21 N -0.72 -33.37 3.69 -322.94 -1.19 -34.56 16 22 C -0.21 -10.98 7.55 84.03 0.63 -10.34 16 23 H 0.07 3.73 7.38 -2.91 -0.02 3.71 16 24 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 25 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 26 Si 0.95 46.83 29.55 68.60 2.03 48.86 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 29 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 2.03 5.99 -2.39 -0.01 2.02 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.62 6.55 -2.39 -0.02 1.60 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.03 1.13 7.60 -2.39 -0.02 1.11 16 37 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.08 1.94 6.71 -2.39 -0.02 1.92 16 39 H 0.03 1.46 7.75 -2.39 -0.02 1.44 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.42 6.00 8.47 -92.71 -0.79 5.21 16 42 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.12 1.29 7.65 -2.39 -0.02 1.28 16 44 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 1.19 7.50 -2.38 -0.02 1.17 16 46 H 0.05 1.51 5.95 -2.39 -0.01 1.50 16 47 H 0.15 1.42 7.35 -2.91 -0.02 1.40 16 48 H 0.17 1.63 8.06 -2.92 -0.02 1.61 16 49 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 50 H 0.15 1.69 8.01 -2.91 -0.02 1.67 16 51 H 0.37 18.87 7.80 -92.71 -0.72 18.15 16 52 H 0.24 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -73.23 411.81 2.51 -70.72 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: -0.60 Total: 34.33 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 6.63 Total: -9.18 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -5.51 Total: -123.64 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.04 Total: -21.09 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -73.23 2.51 -70.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755551361.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.274 kcal (2) G-P(sol) polarization free energy of solvation -73.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds