Wall clock time and date at job start Tue Mar 31 2020 17:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34773 * 119.99745 * 2 1 4 4 O 1.21277 * 120.00398 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99720 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47029 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47341 * 180.02562 * 6 5 3 8 8 N 1.46897 * 109.47528 * 180.02562 * 7 6 5 9 9 C 1.46906 * 110.99814 * 293.95568 * 8 7 6 10 10 C 1.46905 * 111.00158 * 170.00206 * 8 7 6 11 11 C 1.50695 * 109.46944 * 189.99717 * 10 8 7 12 12 C 1.38278 * 119.92801 * 269.72394 * 11 10 8 13 13 C 1.38111 * 120.07611 * 179.72463 * 12 11 10 14 14 C 1.38907 * 119.92042 * 0.55438 * 13 12 11 15 15 N 1.39680 * 120.07281 * 179.74647 * 14 13 12 16 16 C 1.46499 * 120.00038 * 179.97438 * 15 14 13 17 17 C 1.46492 * 119.99794 * 359.97239 * 15 14 13 18 18 C 1.50700 * 109.47087 * 90.00707 * 17 15 14 19 19 H 1.08001 * 119.99941 * 359.97438 * 18 17 15 20 20 C 1.37875 * 120.00266 * 180.02562 * 18 17 15 21 21 N 1.31516 * 120.00089 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00190 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46947 * 60.00079 * 22 20 18 24 24 H 1.48501 * 109.47169 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47187 * 300.00175 * 22 20 18 26 26 C 1.38913 * 119.85605 * 359.72157 * 14 13 12 27 27 C 1.38111 * 119.92121 * 0.02562 * 26 14 13 28 28 H 1.08995 * 109.47018 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46974 * 299.99750 * 1 2 3 30 30 H 1.09001 * 109.46947 * 59.99684 * 1 2 3 31 31 H 0.96996 * 119.99984 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46839 * 60.00386 * 5 3 2 33 33 H 1.08991 * 109.47152 * 300.00448 * 5 3 2 34 34 H 1.09001 * 109.46899 * 60.00540 * 6 5 3 35 35 H 1.09001 * 109.47628 * 300.00235 * 6 5 3 36 36 H 1.09009 * 109.46667 * 60.00059 * 7 6 5 37 37 H 1.09002 * 109.47365 * 300.00556 * 7 6 5 38 38 H 1.08992 * 109.47459 * 59.99744 * 9 8 7 39 39 H 1.09004 * 109.47040 * 179.97438 * 9 8 7 40 40 H 1.09000 * 109.47033 * 299.99847 * 9 8 7 41 41 H 1.09002 * 109.46783 * 309.99945 * 10 8 7 42 42 H 1.09002 * 109.46955 * 69.99566 * 10 8 7 43 43 H 1.08006 * 119.96360 * 359.97438 * 12 11 10 44 44 H 1.08002 * 120.03582 * 180.27147 * 13 12 11 45 45 H 1.09004 * 109.47411 * 89.99464 * 16 15 14 46 46 H 1.09001 * 109.46989 * 209.99904 * 16 15 14 47 47 H 1.09007 * 109.46749 * 329.99632 * 16 15 14 48 48 H 1.09005 * 109.47192 * 210.00106 * 17 15 14 49 49 H 1.08999 * 109.47701 * 330.00397 * 17 15 14 50 50 H 0.96998 * 120.00610 * 180.02562 * 21 20 18 51 51 H 1.07991 * 120.04084 * 179.97438 * 26 14 13 52 52 H 1.07993 * 119.96033 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1559 2.6097 -0.0002 7 6 5.6859 2.6097 -0.0002 8 7 6.1756 3.9947 -0.0004 9 6 5.8260 4.6765 -1.2538 10 6 7.6245 4.0408 0.2377 11 6 8.0493 5.4671 0.4748 12 6 8.4379 6.2575 -0.5912 13 6 8.8225 7.5667 -0.3780 14 6 8.8295 8.0858 0.9104 15 7 9.2229 9.4079 1.1302 16 6 9.2292 9.9539 2.4896 17 6 9.6292 10.2485 0.0013 18 6 8.4238 10.9645 -0.5512 19 1 7.4521 10.8087 -0.1063 20 6 8.5611 11.8178 -1.6255 21 7 9.7442 12.0073 -2.1677 22 14 7.0668 12.7048 -2.3108 23 1 6.4670 13.5554 -1.2515 24 1 7.4786 13.5570 -3.4551 25 1 6.0669 11.7077 -2.7702 26 6 8.4440 7.2874 1.9797 27 6 8.0556 5.9805 1.7589 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 4.0095 0.6532 -0.8892 33 1 4.0089 0.6535 0.8907 34 1 3.7923 3.1240 0.8894 35 1 3.7929 3.1230 -0.8906 36 1 6.0492 2.0954 -0.8901 37 1 6.0493 2.0963 0.8900 38 1 4.7424 4.6889 -1.3707 39 1 6.2000 5.7001 -1.2271 40 1 6.2760 4.1467 -2.0933 41 1 7.8682 3.4387 1.1130 42 1 8.1484 3.6455 -0.6326 43 1 8.4369 5.8517 -1.5921 44 1 9.1217 8.1848 -1.2117 45 1 10.2034 9.7800 2.9466 46 1 9.0317 11.0252 2.4518 47 1 8.4571 9.4628 3.0820 48 1 10.3633 10.9802 0.3388 49 1 10.0693 9.6245 -0.7765 50 1 9.8410 12.6079 -2.9233 51 1 8.4488 7.6877 2.9827 52 1 7.7562 5.3591 2.5898 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093717972.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:29 Heat of formation + Delta-G solvation = -5.913561 kcal Electronic energy + Delta-G solvation = -27801.696298 eV Core-core repulsion = 23993.963800 eV Total energy + Delta-G solvation = -3807.732498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.00602 -39.16086 -37.63639 -35.56409 -34.95025 -33.46297 -32.62781 -30.44011 -30.15778 -28.29414 -27.74825 -27.08905 -26.13101 -24.66094 -23.32662 -21.91973 -21.44845 -20.87268 -20.59403 -19.48683 -17.58001 -16.60725 -16.41020 -16.34233 -16.26271 -15.47304 -15.42536 -14.97260 -14.91447 -14.40511 -14.11158 -14.05713 -13.75475 -13.64624 -13.17988 -13.00320 -12.86629 -12.81921 -12.73309 -12.21397 -12.16170 -12.12415 -11.74380 -11.67633 -11.50792 -11.37800 -11.29109 -11.20328 -10.92252 -10.74800 -10.63875 -10.58261 -10.23678 -10.17133 -9.85713 -9.72112 -9.53234 -8.80391 -8.48025 -8.24792 -8.16246 -6.42569 -5.98759 -4.15018 2.15574 2.26754 2.33654 2.84215 3.30571 3.34471 3.38665 4.00474 4.19557 4.38847 4.43903 4.65518 4.71412 4.78194 4.83683 5.08067 5.14508 5.18688 5.23661 5.24936 5.31390 5.38399 5.41202 5.48277 5.56752 5.65801 5.69436 5.72498 5.84584 5.87506 5.95958 5.98626 6.05599 6.11637 6.16216 6.29308 6.32580 6.43638 6.47794 6.69399 6.97583 7.04345 7.06815 7.12493 7.21440 7.24988 7.31450 7.40839 7.65131 7.83467 7.88909 8.18216 8.30479 8.52869 8.94087 9.51764 10.97782 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013217 B = 0.002065 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.970703 B =13557.202584 C =14754.808459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.742 5.742 3 C 0.509 3.491 4 O -0.533 6.533 5 C -0.138 4.138 6 C -0.102 4.102 7 C 0.055 3.945 8 N -0.536 5.536 9 C 0.019 3.981 10 C 0.111 3.889 11 C -0.167 4.167 12 C -0.067 4.067 13 C -0.188 4.188 14 C 0.241 3.759 15 N -0.616 5.616 16 C 0.099 3.901 17 C 0.249 3.751 18 C -0.531 4.531 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.222 4.222 27 C -0.052 4.052 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.401 0.599 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.020 0.980 41 H 0.072 0.928 42 H 0.032 0.968 43 H 0.107 0.893 44 H 0.131 0.869 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.029 0.971 49 H 0.036 0.964 50 H 0.264 0.736 51 H 0.113 0.887 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.283 -25.979 5.341 28.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.394 5.394 3 C 0.296 3.704 4 O -0.409 6.409 5 C -0.179 4.179 6 C -0.141 4.141 7 C -0.073 4.073 8 N -0.259 5.259 9 C -0.129 4.129 10 C -0.015 4.015 11 C -0.170 4.170 12 C -0.087 4.087 13 C -0.210 4.210 14 C 0.134 3.866 15 N -0.322 5.322 16 C -0.046 4.046 17 C 0.130 3.870 18 C -0.570 4.570 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.246 4.246 27 C -0.071 4.071 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.235 0.765 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.039 0.961 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.125 0.875 44 H 0.148 0.852 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.047 0.953 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.131 0.869 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.790 -24.600 5.608 27.064 hybrid contribution -0.306 -0.240 -1.153 1.217 sum -10.096 -24.841 4.456 27.182 Atomic orbital electron populations 1.21528 0.79775 1.02086 1.02418 1.45873 1.07799 1.08869 1.76871 1.20869 0.90593 0.83464 0.75474 1.90743 1.70567 1.31254 1.48342 1.21646 0.91327 1.00636 1.04289 1.21352 0.94389 0.93828 1.04506 1.22114 0.94959 0.89810 1.00389 1.61997 1.14151 1.14429 1.35355 1.22504 1.01199 1.00357 0.88851 1.20827 0.86447 0.94468 0.99790 1.19110 1.08701 0.95574 0.93613 1.20657 0.97305 0.93361 0.97334 1.20843 1.07975 0.95946 0.96272 1.17951 0.90718 0.84614 0.93320 1.47085 1.68893 1.08752 1.07423 1.21468 0.99502 0.99511 0.84075 1.19269 0.95286 0.89168 0.83311 1.21556 0.94898 1.25681 1.14872 0.92285 1.24960 0.96072 0.96594 0.96441 1.69920 1.22333 1.37277 1.23924 0.86584 0.82935 0.79632 0.78485 1.20238 1.21221 1.20060 1.20563 1.11256 0.95071 0.97662 1.20472 0.96696 0.94255 0.95714 0.90764 0.92231 0.92257 0.76537 0.89022 0.88777 0.90224 0.91046 0.95220 0.90994 0.91536 0.90137 0.96145 0.90963 0.94949 0.87522 0.85164 0.94664 0.91502 0.92662 0.95254 0.94660 0.92630 0.86940 0.87363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.70 59.85 0.64 1.11 16 2 N -0.74 -4.35 5.71 -67.07 -0.38 -4.74 16 3 C 0.51 4.67 7.83 -10.98 -0.09 4.59 16 4 O -0.53 -7.51 15.98 5.56 0.09 -7.42 16 5 C -0.14 -0.91 5.70 -27.88 -0.16 -1.07 16 6 C -0.10 -1.00 4.43 -26.73 -0.12 -1.12 16 7 C 0.06 0.53 4.96 -3.83 -0.02 0.51 16 8 N -0.54 -6.80 4.75 -244.36 -1.16 -7.96 16 9 C 0.02 0.25 8.98 60.07 0.54 0.79 16 10 C 0.11 1.42 5.12 -4.98 -0.03 1.40 16 11 C -0.17 -2.64 4.88 -104.59 -0.51 -3.15 16 12 C -0.07 -1.17 7.90 -39.61 -0.31 -1.48 16 13 C -0.19 -3.86 9.21 -39.38 -0.36 -4.22 16 14 C 0.24 4.98 6.55 -83.78 -0.55 4.43 16 15 N -0.62 -13.42 2.99 -181.00 -0.54 -13.96 16 16 C 0.10 1.77 10.19 59.85 0.61 2.38 16 17 C 0.25 6.33 4.91 -5.20 -0.03 6.31 16 18 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 16 19 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 21 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 22 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C -0.22 -3.98 9.21 -39.38 -0.36 -4.34 16 27 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 28 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.40 1.00 8.83 -40.82 -0.36 0.64 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.07 0.81 6.51 -51.93 -0.34 0.47 16 36 H 0.03 0.26 8.12 -51.92 -0.42 -0.16 16 37 H 0.07 0.60 7.93 -51.93 -0.41 0.19 16 38 H 0.07 0.85 6.47 -51.93 -0.34 0.51 16 39 H 0.08 1.23 5.91 -51.93 -0.31 0.93 16 40 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.07 0.82 7.87 -51.93 -0.41 0.41 16 42 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 43 H 0.11 1.67 8.00 -52.48 -0.42 1.25 16 44 H 0.13 2.95 6.14 -52.49 -0.32 2.62 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.22 8.07 -51.93 -0.42 0.81 16 47 H 0.05 0.89 6.20 -51.92 -0.32 0.56 16 48 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 49 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 50 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 51 H 0.11 1.83 6.14 -52.49 -0.32 1.50 16 52 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 416.49 15.07 6.28 6.28 Total: -1.00 -33.04 416.49 -10.45 -43.49 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.90 Total: 1.29 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -1.55 Total: -8.49 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -1.35 Total: -51.77 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.09 Total: -7.42 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.04 -10.45 -43.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093717972.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.578 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds