Wall clock time and date at job start Tue Mar 31 2020 17:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34773 * 119.99745 * 2 1 4 4 O 1.21277 * 120.00398 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99720 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47029 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47341 * 180.02562 * 6 5 3 8 8 N 1.46897 * 109.47528 * 180.02562 * 7 6 5 9 9 C 1.46906 * 110.99814 * 293.95568 * 8 7 6 10 10 C 1.46905 * 111.00158 * 170.00206 * 8 7 6 11 11 C 1.50695 * 109.46944 * 189.99717 * 10 8 7 12 12 C 1.38278 * 119.92801 * 269.72394 * 11 10 8 13 13 C 1.38111 * 120.07611 * 179.72463 * 12 11 10 14 14 C 1.38907 * 119.92042 * 0.55438 * 13 12 11 15 15 N 1.39680 * 120.07281 * 179.74647 * 14 13 12 16 16 C 1.46499 * 120.00038 * 179.97438 * 15 14 13 17 17 C 1.46492 * 119.99794 * 359.97239 * 15 14 13 18 18 C 1.50700 * 109.47087 * 90.00707 * 17 15 14 19 19 H 1.08001 * 119.99941 * 359.97438 * 18 17 15 20 20 C 1.37875 * 120.00266 * 180.02562 * 18 17 15 21 21 N 1.31516 * 120.00089 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00190 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46947 * 60.00079 * 22 20 18 24 24 H 1.48501 * 109.47169 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47187 * 300.00175 * 22 20 18 26 26 C 1.38913 * 119.85605 * 359.72157 * 14 13 12 27 27 C 1.38111 * 119.92121 * 0.02562 * 26 14 13 28 28 H 1.08995 * 109.47018 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46974 * 299.99750 * 1 2 3 30 30 H 1.09001 * 109.46947 * 59.99684 * 1 2 3 31 31 H 0.96996 * 119.99984 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46839 * 60.00386 * 5 3 2 33 33 H 1.08991 * 109.47152 * 300.00448 * 5 3 2 34 34 H 1.09001 * 109.46899 * 60.00540 * 6 5 3 35 35 H 1.09001 * 109.47628 * 300.00235 * 6 5 3 36 36 H 1.09009 * 109.46667 * 60.00059 * 7 6 5 37 37 H 1.09002 * 109.47365 * 300.00556 * 7 6 5 38 38 H 1.08992 * 109.47459 * 59.99744 * 9 8 7 39 39 H 1.09004 * 109.47040 * 179.97438 * 9 8 7 40 40 H 1.09000 * 109.47033 * 299.99847 * 9 8 7 41 41 H 1.09002 * 109.46783 * 309.99945 * 10 8 7 42 42 H 1.09002 * 109.46955 * 69.99566 * 10 8 7 43 43 H 1.08006 * 119.96360 * 359.97438 * 12 11 10 44 44 H 1.08002 * 120.03582 * 180.27147 * 13 12 11 45 45 H 1.09004 * 109.47411 * 89.99464 * 16 15 14 46 46 H 1.09001 * 109.46989 * 209.99904 * 16 15 14 47 47 H 1.09007 * 109.46749 * 329.99632 * 16 15 14 48 48 H 1.09005 * 109.47192 * 210.00106 * 17 15 14 49 49 H 1.08999 * 109.47701 * 330.00397 * 17 15 14 50 50 H 0.96998 * 120.00610 * 180.02562 * 21 20 18 51 51 H 1.07991 * 120.04084 * 179.97438 * 26 14 13 52 52 H 1.07993 * 119.96033 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1559 2.6097 -0.0002 7 6 5.6859 2.6097 -0.0002 8 7 6.1756 3.9947 -0.0004 9 6 5.8260 4.6765 -1.2538 10 6 7.6245 4.0408 0.2377 11 6 8.0493 5.4671 0.4748 12 6 8.4379 6.2575 -0.5912 13 6 8.8225 7.5667 -0.3780 14 6 8.8295 8.0858 0.9104 15 7 9.2229 9.4079 1.1302 16 6 9.2292 9.9539 2.4896 17 6 9.6292 10.2485 0.0013 18 6 8.4238 10.9645 -0.5512 19 1 7.4521 10.8087 -0.1063 20 6 8.5611 11.8178 -1.6255 21 7 9.7442 12.0073 -2.1677 22 14 7.0668 12.7048 -2.3108 23 1 6.4670 13.5554 -1.2515 24 1 7.4786 13.5570 -3.4551 25 1 6.0669 11.7077 -2.7702 26 6 8.4440 7.2874 1.9797 27 6 8.0556 5.9805 1.7589 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 4.0095 0.6532 -0.8892 33 1 4.0089 0.6535 0.8907 34 1 3.7923 3.1240 0.8894 35 1 3.7929 3.1230 -0.8906 36 1 6.0492 2.0954 -0.8901 37 1 6.0493 2.0963 0.8900 38 1 4.7424 4.6889 -1.3707 39 1 6.2000 5.7001 -1.2271 40 1 6.2760 4.1467 -2.0933 41 1 7.8682 3.4387 1.1130 42 1 8.1484 3.6455 -0.6326 43 1 8.4369 5.8517 -1.5921 44 1 9.1217 8.1848 -1.2117 45 1 10.2034 9.7800 2.9466 46 1 9.0317 11.0252 2.4518 47 1 8.4571 9.4628 3.0820 48 1 10.3633 10.9802 0.3388 49 1 10.0693 9.6245 -0.7765 50 1 9.8410 12.6079 -2.9233 51 1 8.4488 7.6877 2.9827 52 1 7.7562 5.3591 2.5898 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093717972.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:28 Heat of formation + Delta-G solvation = -27.831076 kcal Electronic energy + Delta-G solvation = -27802.646713 eV Core-core repulsion = 23993.963800 eV Total energy + Delta-G solvation = -3808.682912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.72801 -40.50735 -38.74565 -37.00165 -35.59416 -34.84240 -34.15854 -31.89301 -31.44046 -29.64475 -28.96650 -28.23425 -27.02200 -26.15278 -24.70421 -23.16682 -22.95028 -21.72175 -21.26631 -20.92563 -18.63807 -18.20982 -18.06042 -17.04793 -16.97237 -16.86943 -16.37126 -16.25258 -16.13860 -15.78148 -15.34928 -15.23371 -14.95522 -14.68496 -14.45306 -14.28057 -14.13341 -14.00127 -13.82245 -13.31727 -13.16591 -13.12582 -13.05652 -12.91235 -12.75637 -12.67089 -12.64737 -12.54465 -12.48114 -12.21403 -12.11473 -11.80555 -11.73866 -11.48200 -11.37650 -10.92785 -10.64768 -10.38484 -10.11314 -9.63047 -9.14898 -8.36260 -7.78402 -6.37902 0.72843 0.86698 1.35667 1.37586 1.45850 1.67664 2.32708 2.33873 2.64659 2.96346 3.05189 3.40869 3.84857 4.00747 4.08766 4.13212 4.19486 4.27503 4.38342 4.41336 4.47121 4.49793 4.55771 4.61445 4.65312 4.70033 4.72658 4.73617 4.77337 4.80405 4.85703 4.89140 4.94819 4.95381 5.02800 5.12943 5.14921 5.20602 5.26334 5.35032 5.41057 5.50958 5.59811 5.69658 5.70778 5.93228 6.07051 6.18476 6.22686 6.33073 6.50804 6.59888 6.82846 6.95271 7.32382 7.33770 8.82250 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013217 B = 0.002065 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.970703 B =13557.202584 C =14754.808459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.726 5.726 3 C 0.501 3.499 4 O -0.595 6.595 5 C -0.128 4.128 6 C -0.098 4.098 7 C 0.060 3.940 8 N -0.551 5.551 9 C 0.024 3.976 10 C 0.115 3.885 11 C -0.155 4.155 12 C -0.067 4.067 13 C -0.217 4.217 14 C 0.211 3.789 15 N -0.632 5.632 16 C 0.098 3.902 17 C 0.267 3.733 18 C -0.542 4.542 19 H 0.047 0.953 20 C 0.013 3.987 21 N -0.925 5.925 22 Si 0.959 3.041 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.275 1.275 26 C -0.219 4.219 27 C -0.050 4.050 28 H 0.111 0.889 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.421 0.579 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.032 0.968 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.119 0.881 44 H 0.094 0.906 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.077 0.923 48 H 0.009 0.991 49 H 0.011 0.989 50 H 0.267 0.733 51 H 0.132 0.868 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.210 -29.623 6.524 32.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.379 5.379 3 C 0.289 3.711 4 O -0.475 6.475 5 C -0.168 4.168 6 C -0.136 4.136 7 C -0.067 4.067 8 N -0.275 5.275 9 C -0.125 4.125 10 C -0.012 4.012 11 C -0.157 4.157 12 C -0.086 4.086 13 C -0.240 4.240 14 C 0.106 3.894 15 N -0.340 5.340 16 C -0.044 4.044 17 C 0.146 3.854 18 C -0.581 4.581 19 H 0.065 0.935 20 C -0.186 4.186 21 N -0.565 5.565 22 Si 0.784 3.216 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.200 1.200 26 C -0.242 4.242 27 C -0.069 4.069 28 H 0.129 0.871 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.258 0.742 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.116 0.884 42 H 0.060 0.940 43 H 0.137 0.863 44 H 0.112 0.888 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.095 0.905 48 H 0.027 0.973 49 H 0.029 0.971 50 H 0.076 0.924 51 H 0.150 0.850 52 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.716 -28.335 6.814 31.050 hybrid contribution -0.070 0.710 -1.508 1.668 sum -10.786 -27.624 5.305 30.126 Atomic orbital electron populations 1.21625 0.79580 1.04053 1.00997 1.45797 1.08106 1.08956 1.75011 1.21423 0.91822 0.83326 0.74538 1.90723 1.71860 1.33498 1.51442 1.21619 0.89248 0.98908 1.07005 1.21240 0.94781 0.95595 1.02034 1.22165 0.94294 0.88083 1.02196 1.61934 1.14023 1.16647 1.34945 1.22383 1.00994 0.99141 0.89951 1.20849 0.86617 0.92294 1.01431 1.19521 1.06243 0.97043 0.92931 1.20808 0.96734 0.92292 0.98775 1.20747 1.10409 0.97254 0.95610 1.18224 0.92399 0.84536 0.94207 1.46947 1.70328 1.09177 1.07580 1.21593 1.01298 0.98943 0.82612 1.18753 0.93993 0.88574 0.84109 1.21752 0.95008 1.26090 1.15262 0.93464 1.25761 0.98860 0.97312 0.96669 1.70024 1.24160 1.37903 1.24369 0.85588 0.79398 0.78482 0.78100 1.19400 1.20195 1.20047 1.20816 1.10233 0.95510 0.97598 1.20890 0.95325 0.93797 0.96875 0.87050 0.93677 0.93771 0.74215 0.86258 0.85755 0.92924 0.93484 0.93584 0.88715 0.91860 0.92896 0.94931 0.88362 0.93988 0.86342 0.88829 0.92831 0.92623 0.90461 0.97260 0.97101 0.92376 0.85048 0.83995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.70 127.77 1.37 2.15 16 2 N -0.73 -6.88 5.71 -484.52 -2.77 -9.64 16 3 C 0.50 8.49 7.83 87.66 0.69 9.17 16 4 O -0.59 -17.09 15.98 -3.02 -0.05 -17.13 16 5 C -0.13 -1.28 5.70 29.85 0.17 -1.11 16 6 C -0.10 -1.74 4.43 30.59 0.14 -1.61 16 7 C 0.06 0.93 4.96 86.30 0.43 1.35 16 8 N -0.55 -12.54 4.75 -927.02 -4.41 -16.94 16 9 C 0.02 0.60 8.98 127.69 1.15 1.75 16 10 C 0.11 2.52 5.12 85.55 0.44 2.96 16 11 C -0.15 -4.57 4.88 -19.84 -0.10 -4.67 16 12 C -0.07 -2.34 7.90 22.25 0.18 -2.16 16 13 C -0.22 -9.40 9.21 22.40 0.21 -9.19 16 14 C 0.21 8.92 6.55 38.21 0.25 9.17 16 15 N -0.63 -28.61 2.99 -726.56 -2.17 -30.78 16 16 C 0.10 3.55 10.19 127.77 1.30 4.85 16 17 C 0.27 14.43 4.91 85.63 0.42 14.85 16 18 C -0.54 -31.35 9.39 25.60 0.24 -31.11 16 19 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 20 C 0.01 0.77 5.46 84.65 0.46 1.23 16 21 N -0.92 -55.21 13.29 21.45 0.28 -54.92 16 22 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 C -0.22 -7.53 9.21 22.40 0.21 -7.32 16 27 C -0.05 -1.47 9.69 22.25 0.22 -1.26 16 28 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.04 0.57 8.14 -2.39 -0.02 0.56 16 30 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.42 0.60 8.83 -92.71 -0.82 -0.22 16 32 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 35 H 0.05 1.06 6.51 -2.39 -0.02 1.04 16 36 H 0.05 0.60 8.12 -2.38 -0.02 0.58 16 37 H 0.09 1.08 7.93 -2.39 -0.02 1.06 16 38 H 0.06 1.63 6.47 -2.39 -0.02 1.61 16 39 H 0.05 1.63 5.91 -2.38 -0.01 1.61 16 40 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.10 1.71 7.87 -2.39 -0.02 1.69 16 42 H 0.04 0.87 8.06 -2.39 -0.02 0.85 16 43 H 0.12 3.73 8.00 -2.91 -0.02 3.71 16 44 H 0.09 4.66 6.14 -2.91 -0.02 4.64 16 45 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.05 2.09 8.07 -2.39 -0.02 2.07 16 47 H 0.08 2.39 6.20 -2.38 -0.01 2.38 16 48 H 0.01 0.53 8.07 -2.38 -0.02 0.51 16 49 H 0.01 0.64 6.20 -2.39 -0.01 0.62 16 50 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 51 H 0.13 3.94 6.14 -2.91 -0.02 3.93 16 52 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -77.07 416.49 0.75 -76.32 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.08 Total: 16.68 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 7.75 Total: -10.95 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -9.06 Total: -112.29 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.05 Total: -17.13 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -77.07 0.75 -76.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093717972.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.488 kcal (2) G-P(sol) polarization free energy of solvation -77.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds