Wall clock time and date at job start Tue Mar 31 2020 17:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.49174 * 110.99660 * 2 1 4 4 C 1.55073 * 106.81331 * 214.61951 * 3 2 1 5 5 C 1.52814 * 103.86962 * 357.32305 * 4 3 2 6 6 H 1.09004 * 110.27085 * 271.13517 * 5 4 3 7 7 C 1.51659 * 116.57356 * 143.78233 * 5 4 3 8 8 N 1.47677 * 107.08214 * 183.03964 * 7 5 4 9 9 C 1.38580 * 111.00192 * 184.96297 * 8 7 5 10 10 N 1.31217 * 126.46961 * 108.67095 * 9 8 7 11 11 N 1.28532 * 109.86021 * 179.69448 * 10 9 8 12 12 C 1.30299 * 110.04942 * 0.45050 * 11 10 9 13 13 C 1.50706 * 126.34720 * 179.81866 * 12 11 10 14 14 C 1.52999 * 109.46953 * 269.69409 * 13 12 11 15 15 C 1.53006 * 109.46623 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46866 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99834 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47141 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47494 * 119.99680 * 20 18 16 23 23 H 1.48505 * 109.47047 * 239.99860 * 20 18 16 24 24 N 1.36452 * 126.47630 * 288.62722 * 9 8 7 25 25 C 1.46504 * 127.13415 * 0.06000 * 24 9 8 26 26 C 1.46341 * 113.65097 * 59.00776 * 8 7 5 27 27 C 1.53846 * 111.77316 * 304.38386 * 26 8 7 28 28 C 1.46511 * 110.99727 * 244.65413 * 2 1 3 29 29 H 1.08992 * 109.89124 * 46.04047 * 28 2 1 30 30 H 1.09002 * 109.47078 * 175.35236 * 1 2 3 31 31 H 1.09000 * 109.47308 * 295.34304 * 1 2 3 32 32 H 1.08997 * 109.47457 * 55.34512 * 1 2 3 33 33 H 1.08998 * 109.99766 * 333.95726 * 3 2 1 34 34 H 1.09001 * 109.99457 * 95.24041 * 3 2 1 35 35 H 1.09001 * 110.54795 * 115.91850 * 4 3 2 36 36 H 1.08998 * 110.54997 * 238.72662 * 4 3 2 37 37 H 1.08994 * 109.93682 * 63.64430 * 7 5 4 38 38 H 1.09007 * 109.93388 * 302.42863 * 7 5 4 39 39 H 1.09000 * 109.46974 * 149.69157 * 13 12 11 40 40 H 1.09001 * 109.46547 * 29.69247 * 13 12 11 41 41 H 1.09000 * 109.47486 * 60.00062 * 14 13 12 42 42 H 1.09001 * 109.47362 * 299.99339 * 14 13 12 43 43 H 1.08993 * 109.46955 * 300.00075 * 15 14 13 44 44 H 1.09000 * 109.47050 * 59.99904 * 15 14 13 45 45 H 0.96992 * 120.00032 * 180.02562 * 19 18 16 46 46 H 1.08998 * 109.46576 * 269.99940 * 25 24 9 47 47 H 1.09002 * 109.46826 * 29.99645 * 25 24 9 48 48 H 1.08991 * 109.46887 * 149.99434 * 25 24 9 49 49 H 1.09000 * 109.02099 * 64.97613 * 26 8 7 50 50 H 1.09002 * 109.02374 * 183.79446 * 26 8 7 51 51 H 1.08999 * 109.94942 * 175.73628 * 27 26 8 52 52 H 1.08994 * 109.95128 * 296.99106 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0035 1.3927 0.0000 4 6 3.3047 1.3737 -0.8433 5 6 3.4699 -0.0957 -1.2291 6 1 4.0411 -0.6245 -0.4661 7 6 4.0307 -0.3757 -2.6101 8 7 4.0313 -1.8416 -2.7890 9 6 4.6332 -2.1956 -3.9860 10 7 5.8007 -2.7768 -4.1300 11 7 6.0442 -2.9642 -5.3781 12 6 5.0589 -2.5087 -6.0988 13 6 4.9649 -2.5363 -7.6026 14 6 5.5691 -1.2525 -8.1750 15 6 5.4742 -1.2809 -9.7018 16 6 6.0688 -0.0161 -10.2656 17 1 6.4734 0.7333 -9.6013 18 6 6.0952 0.1851 -11.6294 19 7 5.6021 -0.7272 -12.4383 20 14 6.8328 1.7525 -12.3283 21 1 7.3159 2.6107 -11.2167 22 1 7.9699 1.4099 -13.2198 23 1 5.7984 2.4833 -13.1038 24 7 4.1233 -2.0063 -5.2375 25 6 2.8398 -1.3918 -5.5859 26 6 2.7049 -2.4482 -2.6694 27 6 2.0361 -2.0981 -1.3289 28 6 1.9940 -0.5855 -1.2362 29 1 1.4627 -0.1761 -2.0952 30 1 -0.3633 -1.0243 -0.0833 31 1 -0.3634 0.4399 0.9287 32 1 -0.3634 0.5843 -0.8453 33 1 1.2779 2.0704 -0.4497 34 1 2.2244 1.7071 1.0200 35 1 3.1927 1.9927 -1.7336 36 1 4.1524 1.7102 -0.2465 37 1 5.0483 0.0080 -2.6828 38 1 3.4016 0.0909 -3.3683 39 1 3.9188 -2.6097 -7.9000 40 1 5.5127 -3.3976 -7.9851 41 1 6.6152 -1.1791 -7.8776 42 1 5.0213 -0.3912 -7.7926 43 1 6.0222 -2.1421 -10.0839 44 1 4.4283 -1.3544 -9.9996 45 1 5.6210 -0.5859 -13.3977 46 1 2.0682 -2.1606 -5.6269 47 1 2.5750 -0.6510 -4.8314 48 1 2.9215 -0.9067 -6.5585 49 1 2.0758 -2.0903 -3.4844 50 1 2.8013 -3.5312 -2.7461 51 1 1.0235 -2.5006 -1.3022 52 1 2.6208 -2.5052 -0.5040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262867430.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:51 Heat of formation + Delta-G solvation = 88.277917 kcal Electronic energy + Delta-G solvation = -29381.081264 eV Core-core repulsion = 25609.725966 eV Total energy + Delta-G solvation = -3771.355298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.222 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.95135 -40.75522 -37.66580 -35.32193 -34.42626 -33.23348 -32.81368 -32.01658 -29.65560 -29.20685 -27.85402 -26.99539 -26.05927 -24.08939 -23.77329 -23.01883 -21.24828 -21.00994 -20.79406 -20.40851 -20.09281 -17.41447 -16.48426 -16.38434 -16.18662 -15.99553 -15.72454 -15.46943 -15.32301 -14.63636 -14.41590 -14.22321 -14.06630 -13.87235 -13.56272 -13.47289 -13.18073 -13.05646 -12.75876 -12.53626 -12.39311 -12.04592 -11.82285 -11.75128 -11.65885 -11.58926 -11.47250 -11.26987 -11.03895 -10.91308 -10.83428 -10.59582 -10.56461 -10.32143 -10.10140 -9.82132 -9.55367 -9.20663 -9.05656 -8.96892 -8.68539 -8.40191 -6.05161 -4.07503 1.77022 2.34083 2.99152 3.04385 3.27760 3.35762 3.38458 3.39869 3.94365 4.19811 4.30524 4.41550 4.42355 4.52439 4.58321 4.63389 4.68828 4.80941 4.82293 4.86945 4.89269 4.96372 5.00434 5.02455 5.13556 5.20398 5.22964 5.31081 5.31880 5.35899 5.39607 5.44904 5.47922 5.59164 5.65243 5.78453 5.80609 5.88467 5.92487 5.94746 6.06530 6.34561 6.43881 6.51500 6.56619 6.57309 6.70519 6.97934 7.17441 7.60066 7.72757 7.94012 8.36246 8.94567 8.99247 9.56975 11.06126 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016244 B = 0.002336 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.278115 B =11981.003019 C =12790.036108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.508 5.508 3 C 0.035 3.965 4 C -0.123 4.123 5 C -0.089 4.089 6 H 0.101 0.899 7 C 0.074 3.926 8 N -0.448 5.448 9 C 0.327 3.673 10 N -0.263 5.263 11 N -0.294 5.294 12 C 0.210 3.790 13 C -0.038 4.038 14 C -0.102 4.102 15 C 0.022 3.978 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.284 1.284 24 N -0.502 5.502 25 C 0.068 3.932 26 C 0.060 3.940 27 C -0.096 4.096 28 C 0.054 3.946 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.044 0.956 43 H 0.021 0.979 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.101 0.899 49 H 0.039 0.961 50 H 0.087 0.913 51 H 0.075 0.925 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.015 1.343 25.077 28.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.231 5.231 3 C -0.093 4.093 4 C -0.161 4.161 5 C -0.109 4.109 6 H 0.119 0.881 7 C -0.053 4.053 8 N -0.172 5.172 9 C -0.028 4.028 10 N -0.104 5.104 11 N -0.133 5.133 12 C -0.057 4.057 13 C -0.078 4.078 14 C -0.141 4.141 15 C -0.015 4.015 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.210 1.210 24 N -0.200 5.200 25 C -0.076 4.076 26 C -0.067 4.067 27 C -0.135 4.135 28 C -0.055 4.055 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.119 0.881 49 H 0.057 0.943 50 H 0.105 0.895 51 H 0.093 0.907 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.332 0.183 26.142 28.905 hybrid contribution -1.830 2.281 -2.132 3.619 sum -14.162 2.463 24.010 27.984 Atomic orbital electron populations 1.22552 0.87839 1.02097 1.01043 1.64670 1.08143 1.15151 1.35160 1.23321 0.95672 0.89333 1.00924 1.22192 0.97983 0.95941 1.00008 1.21813 0.95652 0.96412 0.96991 0.88065 1.22060 1.02491 0.84563 0.96177 1.58077 1.22331 1.11913 1.24850 1.22728 0.94188 1.04500 0.81407 1.74472 1.10289 1.15062 1.10617 1.74246 1.21821 1.20651 0.96614 1.25308 0.86536 0.97540 0.96354 1.20388 1.02827 1.02823 0.81746 1.21651 0.99905 0.92743 0.99772 1.19108 0.97283 0.97532 0.87552 1.21247 1.39156 1.03799 0.91641 0.92695 1.25015 0.95496 0.96658 0.97258 1.69966 1.46070 1.34080 1.03292 0.86548 0.78969 0.83470 0.79100 1.19764 1.20896 1.21048 1.47237 1.17931 1.46866 1.07917 1.22232 0.82620 0.98738 1.04000 1.22233 0.86611 1.00350 0.97554 1.21355 1.00754 0.94228 0.97120 1.22477 0.95438 0.96011 0.91539 0.93635 0.91170 0.91137 0.95394 0.93374 0.89884 0.91211 0.90151 0.89106 0.93875 0.90476 0.88336 0.92321 0.93743 0.96063 0.96554 0.93007 0.90127 0.90054 0.88063 0.94267 0.89500 0.90686 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.43 60.06 0.57 0.64 16 2 N -0.51 -3.66 5.51 -231.12 -1.27 -4.93 16 3 C 0.04 0.22 6.74 -1.46 -0.01 0.21 16 4 C -0.12 -0.79 6.63 -25.73 -0.17 -0.96 16 5 C -0.09 -0.70 2.66 -90.06 -0.24 -0.94 16 6 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 7 C 0.07 0.71 5.01 -4.08 -0.02 0.69 16 8 N -0.45 -5.07 4.58 -174.60 -0.80 -5.87 16 9 C 0.33 4.77 6.65 -318.88 -2.12 2.65 16 10 N -0.26 -4.82 12.23 30.31 0.37 -4.45 16 11 N -0.29 -5.62 12.18 32.99 0.40 -5.22 16 12 C 0.21 3.49 7.32 -154.01 -1.13 2.36 16 13 C -0.04 -0.62 5.42 -27.88 -0.15 -0.78 16 14 C -0.10 -2.03 5.14 -26.73 -0.14 -2.16 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 17 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 20 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 N -0.50 -6.88 3.21 -121.46 -0.39 -7.26 16 25 C 0.07 0.64 9.19 59.85 0.55 1.19 16 26 C 0.06 0.53 5.21 -3.69 -0.02 0.51 16 27 C -0.10 -0.69 6.06 -27.00 -0.16 -0.85 16 28 C 0.05 0.39 1.65 -67.30 -0.11 0.28 16 29 H 0.05 0.34 7.90 -51.93 -0.41 -0.07 16 30 H 0.07 0.37 8.01 -51.93 -0.42 -0.04 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.03 0.16 7.94 -51.93 -0.41 -0.26 16 33 H 0.05 0.28 7.69 -51.93 -0.40 -0.12 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.43 8.07 -51.93 -0.42 0.02 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.98 8.13 -51.93 -0.42 0.56 16 38 H 0.04 0.39 6.01 -51.92 -0.31 0.07 16 39 H 0.08 1.11 7.92 -51.93 -0.41 0.70 16 40 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.08 0.61 7.87 -51.93 -0.41 0.20 16 47 H 0.08 0.64 5.35 -51.93 -0.28 0.36 16 48 H 0.10 0.99 7.88 -51.93 -0.41 0.58 16 49 H 0.04 0.31 5.39 -51.93 -0.28 0.03 16 50 H 0.09 0.82 8.13 -51.93 -0.42 0.40 16 51 H 0.07 0.44 8.01 -51.93 -0.42 0.03 16 52 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 LS Contribution 400.15 15.07 6.03 6.03 Total: -1.00 -32.97 400.15 -12.83 -45.79 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -9.18 Total: -4.88 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -3.70 Total: -9.99 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.95 Total: -53.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.97 -12.83 -45.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262867430.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.072 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds