Wall clock time and date at job start Tue Mar 31 2020 17:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86796 * 120.00022 * 2 1 4 4 H 1.48498 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47122 * 299.99231 * 3 2 1 6 6 H 1.48501 * 109.47409 * 59.99481 * 3 2 1 7 7 C 1.38752 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00336 * 180.02562 * 7 2 1 9 9 O 1.34926 * 119.99935 * 0.02562 * 7 2 1 10 10 C 1.34313 * 116.99672 * 179.97438 * 9 7 2 11 11 O 1.21215 * 120.00459 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99762 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47277 * 180.02562 * 12 10 9 14 14 C 1.39667 * 120.00169 * 179.97438 * 13 12 10 15 15 C 1.38931 * 120.07695 * 354.22807 * 14 13 12 16 16 C 1.38074 * 119.92923 * 180.30020 * 15 14 13 17 17 C 1.38310 * 120.07386 * 359.44141 * 16 15 14 18 18 C 1.50701 * 119.93046 * 180.28214 * 17 16 15 19 19 F 1.39903 * 109.46933 * 270.27919 * 18 17 16 20 20 F 1.39904 * 109.46766 * 30.27263 * 18 17 16 21 21 F 1.39897 * 109.47594 * 150.27381 * 18 17 16 22 22 C 1.38264 * 120.14748 * 0.55638 * 17 16 15 23 23 C 1.38130 * 120.07556 * 359.72297 * 22 17 16 24 24 N 1.47998 * 120.03777 * 180.02562 * 23 22 17 25 25 O 1.21806 * 119.99993 * 6.10774 * 24 23 22 26 26 O 1.21800 * 120.00251 * 186.09955 * 24 23 22 27 27 H 0.96997 * 120.00359 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.46916 * 60.00114 * 12 10 9 29 29 H 1.08998 * 109.46677 * 300.00060 * 12 10 9 30 30 H 0.97002 * 120.00098 * 359.97438 * 13 12 10 31 31 H 1.08007 * 120.03724 * 0.02562 * 15 14 13 32 32 H 1.08004 * 119.96914 * 179.71670 * 16 15 14 33 33 H 1.08005 * 119.96122 * 179.74393 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7083 1.3463 0.0006 5 1 1.8897 2.3963 -1.2126 6 1 1.8896 2.3965 1.2124 7 6 2.0081 -1.2016 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3335 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0005 11 8 3.2756 -3.4331 0.0010 12 6 1.3809 -4.8393 0.0000 13 7 2.3898 -5.9015 0.0007 14 6 1.9938 -7.2408 0.0009 15 6 0.6493 -7.5694 0.1213 16 6 0.2618 -8.8946 0.1273 17 6 1.2094 -9.8943 0.0021 18 6 0.7822 -11.3395 0.0027 19 9 0.7765 -11.8235 1.3154 20 9 -0.5033 -11.4460 -0.5391 21 9 1.6766 -12.0906 -0.7674 22 6 2.5483 -9.5710 -0.1180 23 6 2.9434 -8.2474 -0.1190 24 7 4.3767 -7.9022 -0.2481 25 8 5.1966 -8.7765 -0.4650 26 8 4.7365 -6.7438 -0.1377 27 1 -0.4850 0.8400 -0.0004 28 1 0.7585 -4.9295 -0.8903 29 1 0.7578 -4.9299 0.8897 30 1 3.3329 -5.6746 0.0011 31 1 -0.0916 -6.7891 0.2145 32 1 -0.7828 -9.1508 0.2255 33 1 3.2861 -10.3542 -0.2114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004245781.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:05 Heat of formation + Delta-G solvation = -192.655510 kcal Electronic energy + Delta-G solvation = -27936.273836 eV Core-core repulsion = 22937.535819 eV Total energy + Delta-G solvation = -4998.738017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.065 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.49036 -48.01193 -47.94129 -42.35867 -40.15551 -39.26229 -37.06753 -36.18099 -35.09700 -32.52270 -32.34518 -31.37043 -28.26106 -26.81898 -25.70240 -24.98890 -23.13863 -22.26916 -20.43524 -19.82668 -19.02750 -18.82036 -18.48942 -18.18833 -17.91115 -17.61129 -17.56768 -16.50924 -16.24242 -15.66447 -15.05613 -14.98706 -14.82774 -14.53593 -14.47247 -14.36899 -14.18112 -14.12384 -14.09854 -13.93216 -13.89481 -13.05479 -12.76392 -12.46586 -12.03817 -11.75777 -11.57787 -11.39184 -11.22787 -11.09056 -10.95822 -10.61600 -10.51281 -10.07316 -10.03476 -9.40874 -8.77129 -8.31617 -6.60603 -4.29187 -0.28311 0.46958 1.10990 1.25825 2.28591 2.65190 2.76367 2.92109 3.10994 3.18287 3.23824 3.33572 3.62373 3.77514 3.94727 4.06219 4.22485 4.28246 4.35706 4.56253 4.92019 4.92797 5.06633 5.22639 5.31391 5.33905 5.46607 5.73699 6.06530 6.29820 6.61530 7.20940 7.31148 7.63754 7.72986 8.42168 8.87831 9.54309 10.56455 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.002564 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.645480 B =10918.462770 C =12052.233035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.045 3.955 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.384 4.384 8 H 0.100 0.900 9 O -0.204 6.204 10 C 0.383 3.617 11 O -0.542 6.542 12 C 0.120 3.880 13 N -0.684 5.684 14 C 0.315 3.685 15 C -0.202 4.202 16 C 0.025 3.975 17 C -0.258 4.258 18 C 0.521 3.479 19 F -0.176 7.176 20 F -0.175 7.175 21 F -0.176 7.176 22 C 0.047 3.953 23 C -0.135 4.135 24 N 0.048 4.952 25 O -0.157 6.157 26 O -0.180 6.180 27 H 0.272 0.728 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.434 0.566 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.213 -20.300 0.339 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.160 4.160 3 Si 0.770 3.230 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.460 4.460 8 H 0.118 0.882 9 O -0.110 6.110 10 C 0.229 3.771 11 O -0.439 6.439 12 C -0.005 4.005 13 N -0.320 5.320 14 C 0.196 3.804 15 C -0.225 4.225 16 C 0.006 3.994 17 C -0.263 4.263 18 C 0.467 3.533 19 F -0.157 7.157 20 F -0.156 7.156 21 F -0.157 7.157 22 C 0.028 3.972 23 C -0.226 4.226 24 N 0.560 4.440 25 O -0.373 6.373 26 O -0.381 6.381 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.288 0.712 31 H 0.178 0.822 32 H 0.171 0.829 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.769 -19.928 0.405 20.286 hybrid contribution 0.941 0.715 -0.030 1.182 sum -2.827 -19.214 0.375 19.424 Atomic orbital electron populations 1.69982 1.06069 1.28033 1.45531 1.25385 0.95892 0.99005 0.95742 0.85561 0.79559 0.79591 0.78284 1.18756 1.19990 1.19994 1.21356 0.92618 0.79248 1.52796 0.88200 1.83826 1.39145 1.13192 1.74814 1.22604 0.86828 0.87089 0.80600 1.90633 1.15181 1.87297 1.50823 1.20771 0.90528 0.84235 1.04925 1.46258 1.13787 1.00907 1.71089 1.17745 0.92477 0.83928 0.86291 1.20827 0.93035 0.97552 1.11060 1.21017 0.99944 0.91069 0.87407 1.19458 0.94363 0.92278 1.20183 1.17915 0.74834 0.86672 0.73870 1.93244 1.96205 1.89683 1.36582 1.93200 1.39724 1.96689 1.86027 1.93208 1.68066 1.78805 1.75654 1.20397 0.95734 0.94233 0.86852 1.20238 0.80254 0.94567 1.27582 1.43329 1.02723 1.00561 0.97434 1.94518 1.48228 1.43049 1.51538 1.94324 1.83463 1.04102 1.56212 0.91817 0.87672 0.87678 0.71164 0.82197 0.82938 0.82060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.72 13.67 55.48 0.76 -22.96 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 3 Si 0.95 20.30 29.55 -169.99 -5.02 15.27 16 4 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.38 -10.72 9.65 30.92 0.30 -10.42 16 8 H 0.10 2.83 6.86 -52.48 -0.36 2.47 16 9 O -0.20 -5.34 9.75 -20.72 -0.20 -5.54 16 10 C 0.38 8.51 7.97 36.01 0.29 8.80 16 11 O -0.54 -13.58 14.90 -19.06 -0.28 -13.87 16 12 C 0.12 1.81 5.55 -5.19 -0.03 1.79 16 13 N -0.68 -10.26 5.58 -59.81 -0.33 -10.60 16 14 C 0.32 3.84 6.63 -83.79 -0.56 3.28 16 15 C -0.20 -1.77 9.32 -39.39 -0.37 -2.14 16 16 C 0.03 0.19 9.39 -39.62 -0.37 -0.18 16 17 C -0.26 -2.22 5.45 -104.59 -0.57 -2.79 16 18 C 0.52 4.39 3.36 36.01 0.12 4.51 16 19 F -0.18 -1.58 17.30 2.25 0.04 -1.54 16 20 F -0.18 -1.45 16.46 2.25 0.04 -1.41 16 21 F -0.18 -1.59 16.46 2.25 0.04 -1.55 16 22 C 0.05 0.47 8.90 -39.61 -0.35 0.12 16 23 C -0.14 -1.70 6.86 -79.76 -0.55 -2.25 16 24 N 0.05 0.74 4.45 34.06 0.15 0.89 16 25 O -0.16 -2.36 18.46 -29.46 -0.54 -2.90 16 26 O -0.18 -3.17 15.71 -29.46 -0.46 -3.63 16 27 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.11 1.32 8.13 -51.93 -0.42 0.90 16 29 H 0.11 1.30 7.73 -51.93 -0.40 0.89 16 30 H 0.43 7.68 3.88 -41.18 -0.16 7.52 16 31 H 0.16 1.09 6.74 -52.48 -0.35 0.73 16 32 H 0.15 0.72 7.61 -52.48 -0.40 0.32 16 33 H 0.16 1.41 7.16 -52.48 -0.38 1.04 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -31.85 318.61 -4.81 -36.67 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -1.61 Total: 4.56 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.18 Total: 1.81 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.58 Total: -32.67 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -1.49 Total: -25.94 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.11 Total: -4.50 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.85 -4.81 -36.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004245781.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.990 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds